Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005129

Physical Location & Seq

Genomic Coordinates Forward (+)

21588563 .. 21589528

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0126600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGTAATAGATTCAAGCAGAAGCTAGGCGAAGGAGGCTATGGTTGTGTATATAAAGGAAAACTACGCAGTGGTCACTTTGGAGCAATTAAGTTGTTGGGAAAGTCTACAACTAACGGGCAGGAATTCATTAGTGAGGTAGCTACTATTGGGAGGATTCACCATACCAATGTGGTTCAACTTGTTGGTTATTGTGTCGAGGGATCAAAAAGAGCTCTAGTATATGATTTCATGCCAAATGGGTCTCTTGATAAATACATTTATTCAAGAGAAGGAAGTGTCCGGTTAAGTATTAAGCAGATGTATGAGATTTCTATGGGTGTGGCTCAAGGTATCGATTACCTAAATCAAGGATGTGATATGAAAATTTTGCATTTTGATATAAAGCCTCACAACATTCTTCTTGATCATAACTTTATTCCAAAGGTTTCTGATTTTGGTCTTGCAAAGTTATACCCAACGGATGATAGCATAGTGTCTTTGACAGCAGCAAGGGGAACAATGGGATACATTGCTCCTGAGTTGTTCTACAAGAACATTGGTGGTGTTTCATTCAAAGCGGATGTTTATAGTTTTGGAATGTTGTTGATGGAAATGGCAAGCAAGCGAAAGAACCTGAATGAAATGGTAGAGCACTCGAGCCAAATTTACTTTCCATTATGGGTGTACGATCAATATAGTCATGGAAATGATCATTTAGAGATGGTTGACGTCACAGAGGAGGAAAGAGCAATAATTAAGAAGATGGTCATCACAGCCTTATGGTGCATACAATTGAAACCAAGCGATCGTCCTTCAATGAAAAAAGTTATAGAAATGCTTGAAGCAGATGCTGAAGGCCTACAGATTCCTCCCAAGCCACTTCTATACCCACAAGAGATGGCCATTGATGGTTTGCAACAAATTAATTTGAATCCAACATGCTCCAATGTTGAGCTAACATGCACGTTGTCAGCTAGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glycos_transf_1

Protein Analysis

321

Amino Acids

36.06

Weight (kDa)

6.76

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	5 - 274	2e-43	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	6 - 272	7e-42	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04480 AT5G04480
fragaria_vesca	FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830
malus_domestica	MD02G1241600.v1.1 MD07G1075100.v1.1
prunus_persica	Prupe.2G095400_v2.0.a1 Prupe.2G095400_v2.0.a1
pyrus_communis	pycom01g10260 pycom02g20700 pycom02g20720 pycom02g20730 pycom02g20780 pycom07g05910
rosa_chinensis	RchiOBHm_Chr1g0336581
rosa_laevigata	RLG00000029353
rosa_multiflora	Rmu_sc0009324.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315490
rosa_rugosa	Rorug01G0126500 Rorug01G0126600
rosa_samantha	Rh1AG147700 Rh1BG115500 Rh1CG139100 Rh1DG154200
rosa_wichuraiana	Rw1G011930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	714
AccI	GTMKAC	1 cut(s)	107
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	3 cut(s)	125, 366, 645
AcuI	CTGAAG	1 cut(s)	855
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	1 cut(s)	668
AgsI	TTSAA	8 cut(s)	16, 179, 267, 556, 778, 798, 824, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AluBI	AGCT	5 cut(s)	25, 143, 215, 937, 956
AluI	AGCT	5 cut(s)	25, 143, 215, 937, 956
Alw21I	GWGCWC	2 cut(s)	217, 636
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	833
Ama87I	CYCGRG	1 cut(s)	637
AoxI	GGCC	2 cut(s)	838, 882
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	3 cut(s)	125, 366, 645
AseI	ATTAAT	1 cut(s)	906
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	217, 636
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	5 cut(s)	583, 697, 739, 874, 884
BciVI	GTATCC	1 cut(s)	500
BclI	TGATCA	2 cut(s)	406, 691
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	3 cut(s)	26, 218, 957
BfmI	CTRYAG	1 cut(s)	842
BfuI	GTATCC	1 cut(s)	500
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	637
BmsI	GCATC	1 cut(s)	820
BpuEI	CTTGAG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	749
BsaHI	GRCGYC	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	510
Bse8I	GATNNNNATC	1 cut(s)	749
BseCI	ATCGAT	1 cut(s)	336
BseGI	GGATG	3 cut(s)	359, 469, 568
BseJI	GATNNNNATC	1 cut(s)	749
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	510
BseRI	GAGGAG	1 cut(s)	734
BseXI	GCAGC	1 cut(s)	500
Bsh1285I	CGRYCG	1 cut(s)	790
BshFI	GGCC	2 cut(s)	840, 884
BshVI	ATCGAT	1 cut(s)	336
BsiEI	CGRYCG	1 cut(s)	790
BsiHKAI	GWGCWC	2 cut(s)	217, 636
BsiHKCI	CYCGRG	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	840, 884
Bso31I	GGTCTC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	637
Bsp1286I	GDGCHC	2 cut(s)	217, 636
Bsp143I	GATC	5 cut(s)	203, 406, 670, 691, 787
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	2 cut(s)	840, 884
BspCNI	CTCAG	1 cut(s)	511
BspDI	ATCGAT	1 cut(s)	336
BspPI	GGATC	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	510
BssMI	GATC	5 cut(s)	203, 406, 670, 691, 787
BssNI	GRCGYC	1 cut(s)	711
BstACI	GRCGYC	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	601, 605
BstDEI	CTNAG	1 cut(s)	519
BstF5I	GGATG	3 cut(s)	359, 469, 568
BstKTI	GATC	5 cut(s)	206, 409, 673, 694, 790
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	5 cut(s)	203, 406, 670, 691, 787
BstMCI	CGRYCG	1 cut(s)	790
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNSI	RCATGY	2 cut(s)	924, 945
BstSFI	CTRYAG	1 cut(s)	842
BstV1I	GCAGC	1 cut(s)	500
Bsu15I	ATCGAT	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	2 cut(s)	840, 884
BsuTUI	ATCGAT	1 cut(s)	336
BtsCI	GGATG	3 cut(s)	359, 469, 568
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	601, 605
CaiI	CAGNNNCTG	1 cut(s)	833
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	667
CviAII	CATG	4 cut(s)	232, 683, 921, 942
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	5 cut(s)	205, 408, 672, 693, 789
DpnII	GATC	5 cut(s)	203, 406, 670, 691, 787
EaeI	YGGCCR	1 cut(s)	882
Ecl136II	GAGCTC	1 cut(s)	215
Eco147I	AGGCCT	1 cut(s)	840
Eco24I	GRGCYC	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	855
Eco88I	CYCGRG	1 cut(s)	637
EcoICRI	GAGCTC	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	4 cut(s)	235, 686, 924, 945
FatI	CATG	4 cut(s)	231, 682, 920, 941
FbaI	TGATCA	2 cut(s)	406, 691
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	3 cut(s)	366, 476, 575
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	489
FspBI	CTAG	3 cut(s)	26, 218, 957
GluI	GCNGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	840, 884
HapII	CCGG	1 cut(s)	283
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	4 cut(s)	235, 686, 924, 945
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	4 cut(s)	12, 157, 847, 913
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	108, 667, 709
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	4 cut(s)	248, 267, 404, 518
Hpy8I	GTNNAC	3 cut(s)	108, 667, 709
HpyAV	CCTTC	4 cut(s)	26, 266, 804, 830
HpyCH4IV	ACGT	2 cut(s)	711, 947
HpyCH4V	TGCA	5 cut(s)	373, 446, 768, 898, 945
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	2 cut(s)	711, 947
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	4 cut(s)	235, 686, 924, 945
Ksp22I	TGATCA	2 cut(s)	406, 691
Kzo9I	GATC	5 cut(s)	203, 406, 670, 691, 787
LmnI	GCTCC	3 cut(s)	83, 520, 929
LpnPI	CCDG	4 cut(s)	107, 296, 531, 629
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	3 cut(s)	26, 218, 957
MaeII	ACGT	2 cut(s)	711, 947
MaeIII	GTNAC	2 cut(s)	74, 712
MalI	GATC	5 cut(s)	205, 408, 672, 693, 789
MboI	GATC	5 cut(s)	203, 406, 670, 691, 787
MboII	GAAGA	2 cut(s)	392, 754
MfeI	CAATTG	1 cut(s)	773
MhlI	GDGCHC	2 cut(s)	217, 636
MlsI	TGGCCA	1 cut(s)	884
MluCI	AATT	8 cut(s)	87, 125, 366, 645, 735, 773, 903, 907
MluNI	TGGCCA	1 cut(s)	884
MmeI	TCCRAC	1 cut(s)	941
MnlI	CCTC	8 cut(s)	29, 130, 147, 193, 399, 712, 715, 861
Mox20I	TGGCCA	1 cut(s)	884
MscI	TGGCCA	1 cut(s)	884
MseI	TTAA	5 cut(s)	90, 287, 294, 738, 906
MslI	CAYNNNNRTG	2 cut(s)	168, 687
Msp20I	TGGCCA	1 cut(s)	884
MspI	CCGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	773
MwoI	GCNNNNNNNGC	1 cut(s)	36
NdeII	GATC	5 cut(s)	203, 406, 670, 691, 787
NlaIII	CATG	4 cut(s)	235, 686, 924, 945
NmuCI	GTSAC	2 cut(s)	74, 712
NspI	RCATGY	2 cut(s)	924, 945
PaeR7I	CTCGAG	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	840
PfeI	GAWTC	4 cut(s)	12, 157, 847, 913
PkrI	GCNGC	1 cut(s)	490
Ple19I	CGATCG	1 cut(s)	790
PshBI	ATTAAT	1 cut(s)	906
Psp124BI	GAGCTC	1 cut(s)	217
PspXI	VCTCGAGB	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	833
PvuI	CGATCG	1 cut(s)	790
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	2 cut(s)	168, 687
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	5 cut(s)	90, 287, 294, 738, 906
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	5 cut(s)	203, 406, 670, 691, 787
SduI	GDGCHC	2 cut(s)	217, 636
SfaNI	GCATC	1 cut(s)	820
SfcI	CTRYAG	1 cut(s)	842
Sfr274I	CTCGAG	1 cut(s)	637
SlaI	CTCGAG	1 cut(s)	637
SmiMI	CAYNNNNRTG	2 cut(s)	168, 687
SmlI	CTYRAG	2 cut(s)	327, 637
SmoI	CTYRAG	2 cut(s)	327, 637
Sse9I	AATT	8 cut(s)	87, 125, 366, 645, 735, 773, 903, 907
SseBI	AGGCCT	1 cut(s)	840
SsiI	CCGC	1 cut(s)	560
SspMI	CTAG	3 cut(s)	26, 218, 957
SstI	GAGCTC	1 cut(s)	217
StuI	AGGCCT	1 cut(s)	840
TaiI	ACGT	2 cut(s)	714, 950
TaqI	TCGA	3 cut(s)	198, 336, 638
TasI	AATT	8 cut(s)	87, 125, 366, 645, 735, 773, 903, 907
TfiI	GAWTC	4 cut(s)	12, 157, 847, 913
Tru1I	TTAA	5 cut(s)	90, 287, 294, 738, 906
Tru9I	TTAA	5 cut(s)	90, 287, 294, 738, 906
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	74, 712
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	2 cut(s)	74, 712
TspDTI	ATGAA	6 cut(s)	118, 220, 377, 540, 636, 815
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	906
XapI	RAATTY	3 cut(s)	125, 366, 645
XceI	RCATGY	2 cut(s)	924, 945
XhoI	CTCGAG	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	107
XspI	CTAG	3 cut(s)	26, 218, 957
ZraI	GACGTC	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.