Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005129

Physical Location & Seq

Genomic Coordinates Reverse (-)

32195982 .. 32204492

Gene Structure 8511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG154200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3108 bp

ATGGGCCGGAACTCTTCGGCTCCTCCGCCCATCCTTGACGACAATGGAGGTGCCGGCGGTAACGATCTAGGCTTCCACTCGATTCGCGATCGTTTTCCATTCAAACGGAACCCTAACTCTAGCCACCACCGCGGCCGGGACCGGAGCTTAGTGGATCGCGGCCTTTCGTCCCTGCGCCACCGATCGCATCACCGCTTCTACCGCAAGGGAGGAAAGTCGGCGTTCTATTCCGTGCTCATCTTCGTCCTGTTCGGCTTCGCGGCGGCGACGATGCTGTTGCAGAGCTCCATGACTTCGGTCTTCAGGCAAGGGAGTGAGAGAGGGCGGTTGTTGAGGGACGGCTTGAAGTTCGGGAGCACCTTGAGGTTTGTGCCTGGAAGGGTTTCGCAGAGGTTCGTCCAGGCTGATGGGCTCGACGGAGCTCGGAGCGAGCCCAGGATTGGTGTCCGGCCGCCGAGGCTAGCGGTTATCTTGGGAAACATGAAGAAGGATCCACATTCCTTGATGTTGATTACTGTGATGAAGAATATCAAGAAATTGGGTTATAGGCTGAAGATATTTTCCACAGCGAATGGTAAAGCACGTAAAATGTGGGAGGAACATGGTGGGCCAATATCCGTTTTAGCTCCGGAGAAATACAGCCTTATTGATTGGTCGATTTTTGAAGGTCTTATTGTTGACTCTCTTGAAGCAAAAGAACTCATTTCAAGTCTTATGCAGGAGCCTTTTTGTTCAGTACCACTGATATGGATAATTCAAGAAGATACACTTGCCAAGCGTCTTCCATCGTATGCGGAAATGGGCTGGACGCATCTTGTTTCTCATTGGAAAAGTGTTCTTAGCAGAGCTAATGTTGTGGTGTTTCCAGATTTCACTTTGCCGATGTTATACAGTGTCCTTGACACTGGAAACTTCTTTGTCATTCCTGGATCCCCTGTCGATGTTTGGGCTGCCGAAAGCTACAGTAAAACCCACTCCAAGAATCAATTGAGGAAGAACAACAGATTCAGTGAAGATGATATGTTGGTTCTAGTTGTCGGAAGTTCTCTTTTCTTCAATGAGCTTTCATGGGACTATGCTGTAGCGATGCATTCTATAGGACCACTTCTAATAGAATATGCAAGGAGGAAAGATGCAGAAGGGTTGTTCAAATTTGTTTTTTTATTTGGTAATTCATCCGATGGATATGATGATGCATTCCAGGAAGTTGCTTCACGTCTAGGACTTCTTCAAGGTTCTGTAAGGCATTACGGCTTGAATGATGACGTCAATAGTGTGTTATTAATGGCAGATATTGTTCTCTATGGTTCTTCACAAGATGTACAGGGTTTTCCACCATTGCTTATCCGTGCCATGACTTTTGGAATCCCAGTTATTGCACCTGATTTTCCTGTCCTAAAGAAATATTTAGTCGATGGAGTTCACACAGTATTTTTTCCAAGACATGATCCTGATGCTTTACTGAAGGCATTCTCTCAAATGATTTCAAATGGGAAACTTTCTAAATTTGCTCGAACAGTTGCTTCCTCTGGAAGACTGATTGCTATGAACCTGCTTGCATCAGAATCCATAACTGGTTATGCAAGGCTTCTGGAGAGTGTACTAAATTTTCCATCAGATGCTCTGCTGCCAGGTCCATTCTCCCAGCTTCAACAGGGTACATGGGAATGGAATTTGTTCGGGAGTGAAATAGATTATGGTACTAGAAACATTAATGAGAATCAGGCATCCGTGGAAAACTCTTCTGTTATTCATTCTCTTGAACAAGAGTTTTCCGGATTTTCTTACTCAACAAACACCTCTGAGAATGGAACTGAGAATTTGGCACGCGATAATCCAACTCAACTAGATTGGGACATCTTGAGGGAAATTGAACTTTCTGAAGAATATGAGAGGCTAGAAATGGAGGAGCTAGCAGAAAGAATGGAGAGTGATCCTGGTCAATGGGATGACATATATCGTAATGCCCGAAAAGCTGAAAAGCTTAAGTTTGAAGCAAATGAGAGGGATGAGGGGGAACTTGAGAGGACAGGCCAGCCAGTGTGCATTTATGAGATATACATTGGATCCGGGAGCTGGCCATTCTTGCACCATGGTTCATTGTACCGTGGGCTAAGTCTTTCTACAAAAGCACGAAGATCAAAATCAGATGATGTGAATGCCGTTGACCGGCTTCCCTTATTGAATGAAACTTACTATCGTAATGTTCTCTGTGAGATTGGAGGAATGTTTGCTATTGCAAACAAGGTGGATAACATTCATAAACGACCTTGGATTGGGTTTCAGTCTTGGCGTGCTGCTGGTAGAAAGGTGTCTTTGTCCAAGAAAGCTGAAAGAGTTTTGGAACAAGCAATTCAAGATAACACGAAAGGAGATGTGATATACTTTTGGTCACGCTTGAACAGGAATGGTGGGGTTACAGGAAGCAAAGATGCACTCACTTTTTGGTCCGCATGTGACATCTTGAATGAGGGGCATTGCAGAAATATTTTTGAAGATGCATTTCGCTTGATGTATGTCTTGCCGTCTAATGCTGAAGCTCTTCCTCCCATGCCAGAGGATGGTGGTCACTGGTCTGCCTTGCATAGCTGGGTGATGCCAACTCGCTCCTTCCTTGAGTTCGCGATGTTTTCTCGGATGTTTGTTGATTCGCTTGATGCATTGCACACCAACTCTACCAAGAAAAATTTCTGCCTGTTGGGTTCTTCGGAACCTGAGCAAAGACATTGTTACTGTCGGGTGTTAGAACTTCTTGTCAATGTCTGGGCTTATCATAGTGCACGAACGATGGTTTACATAGATCCGCTCTCGGGTTCACTGGAAGAGCAGCACCCAGTTGAGCAACGCAAAGGATTCATGTGGGCAAAATATTTCAATAGTACGTTACTGAAGAGTATGGATGAAGATTTAGCAGAAGCAGCAGATGATGGTGACCATCCGAGGGAGATGTGGTTGTGGCCATTAACTGGGGAAGTGCATTGGCAAGGAATTTATGAGAGGGAGAGGGAAGAGAGATATAGGCTAAAGATGGACAAGAAAAGGAAAACGAAAGAGAAATTGTTTGAAAGAATGAAGTATGGATACAAGCAGAAGACGCTTGGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glycos_transf_1

Protein Analysis

1035

Amino Acids

117.66

Weight (kDa)

6.87

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_trans_1_4	PF13692	396 - 497	1.3e-08	Glycosyl transferases group 1
Glycos_transf_1	PF00534	410 - 501	6.8e-10	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04480 AT5G04480
fragaria_vesca	FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830
malus_domestica	MD02G1241600.v1.1 MD07G1075100.v1.1
prunus_persica	Prupe.2G095400_v2.0.a1 Prupe.2G095400_v2.0.a1
pyrus_communis	pycom01g10260 pycom02g20700 pycom02g20720 pycom02g20730 pycom02g20780 pycom07g05910
rosa_chinensis	RchiOBHm_Chr1g0336581
rosa_laevigata	RLG00000029353
rosa_multiflora	Rmu_sc0009324.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315490
rosa_rugosa	Rorug01G0126500 Rorug01G0126600
rosa_samantha	Rh1AG147700 Rh1BG115500 Rh1CG139100 Rh1DG154200
rosa_wichuraiana	Rw1G011930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1269
Acc36I	ACCTGC	1 cut(s)	1560
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	2 cut(s)	2561, 2966
AccBSI	CCGCTC	1 cut(s)	2806
AccII	CGCG	6 cut(s)	87, 132, 159, 260, 1830, 2624
AccIII	TCCGGA	2 cut(s)	628, 1775
AcoI	YGGCCR	4 cut(s)	133, 449, 2078, 2957
AcsI	RAATTY	7 cut(s)	1151, 1505, 1606, 1672, 1819, 2686, 2988
AcuI	CTGAAG	6 cut(s)	286, 572, 1484, 1902, 2556, 2909
AcyI	GRCGYC	1 cut(s)	1266
AfaI	GTAC	7 cut(s)	738, 1323, 1602, 1660, 1702, 2105, 2881
AfiI	CCNNNNNNNGG	9 cut(s)	136, 440, 2076, 2169, 2276, 2561, 2810, 2941, 2966
AflII	CTTAAG	1 cut(s)	1985
AjiI	CACGTC	1 cut(s)	1217
AjnI	CCWGG	7 cut(s)	373, 399, 434, 925, 1200, 1630, 1936
AjuI	GAANNNNNNNTTGG	2 cut(s)	2672, 2704
Alw21I	GWGCWC	5 cut(s)	237, 287, 359, 424, 2782
Alw44I	GTGCAC	1 cut(s)	2778
Ama87I	CYCGRG	1 cut(s)	2809
Aor13HI	TCCGGA	2 cut(s)	628, 1775
AoxI	GGCC	8 cut(s)	4, 133, 160, 449, 608, 2032, 2078, 2957
ApaLI	GTGCAC	1 cut(s)	2778
ApeKI	GCWGC	5 cut(s)	950, 1627, 2297, 2827, 2918
ApoI	RAATTY	7 cut(s)	1151, 1505, 1606, 1672, 1819, 2686, 2988
AseI	ATTAAT	2 cut(s)	1283, 1713
Asp700I	GAANNNNTTC	5 cut(s)	382, 1469, 1676, 2541, 2687
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	6 cut(s)	4, 139, 608, 1100, 1634, 2448
AsuC2I	CCSGG	2 cut(s)	137, 2071
AsuHPI	GGTGA	3 cut(s)	182, 2605, 2942
AsuNHI	GCTAGC	2 cut(s)	460, 1912
AvaI	CYCGRG	1 cut(s)	2809
AvaII	GGWCC	4 cut(s)	139, 1100, 1634, 2448
BaeGI	GKGCMC	1 cut(s)	2782
BalI	TGGCCA	2 cut(s)	2080, 2959
BamHI	GGATCC	3 cut(s)	490, 929, 2066
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	4 cut(s)	287, 414, 424, 435
BarI	GAAGNNNNNNTAC	2 cut(s)	3065, 3097
BbsI	GAAGAC	4 cut(s)	292, 773, 1540, 3098
Bbv12I	GWGCWC	5 cut(s)	237, 287, 359, 424, 2782
BbvI	GCAGC	5 cut(s)	937, 1614, 2284, 2839, 2930
BceAI	ACGGC	4 cut(s)	355, 1267, 2147, 2509
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	7 cut(s)	375, 401, 436, 927, 1202, 1632, 1938
BciVI	GTATCC	1 cut(s)	3074
BcnI	CCSGG	2 cut(s)	137, 2071
BfaI	CTAG	9 cut(s)	68, 120, 461, 1031, 1220, 1704, 1847, 1898, 1913
BfmI	CTRYAG	3 cut(s)	961, 1080, 1095
BfrI	CTTAAG	1 cut(s)	1985
BfuAI	ACCTGC	1 cut(s)	1560
BfuI	GTATCC	1 cut(s)	3074
BglI	GCCNNNNNGGC	1 cut(s)	457
Bme1390I	CCNGG	9 cut(s)	137, 375, 401, 436, 927, 1202, 1632, 1938, 2071
Bme18I	GGWCC	4 cut(s)	139, 1100, 1634, 2448
BmeT110I	CYCGRG	1 cut(s)	2809
BmgBI	CACGTC	1 cut(s)	1217
BmgT120I	GGNCC	6 cut(s)	4, 139, 608, 1100, 1634, 2448
BmiI	GGNNCC	9 cut(s)	21, 52, 110, 140, 492, 723, 931, 2068, 2712
BmrFI	CCNGG	9 cut(s)	137, 375, 401, 436, 927, 1202, 1632, 1938, 2071
BmrI	ACTGGG	3 cut(s)	1364, 2828, 2976
BmtI	GCTAGC	2 cut(s)	464, 1916
BmuI	ACTGGG	3 cut(s)	1364, 2828, 2976
BoxI	GACNNNNGTC	1 cut(s)	296
BpiI	GAAGAC	4 cut(s)	292, 773, 1540, 3098
BpmI	CTGGAG	1 cut(s)	1613
Bpu10I	CCTNAGC	1 cut(s)	2715
BpuEI	CTTGAG	4 cut(s)	382, 1882, 2042, 2636
BpuMI	CCSGG	2 cut(s)	137, 2071
BsaAI	YACGTR	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	2143
BsaHI	GRCGYC	1 cut(s)	1266
BsaJI	CCNNGG	8 cut(s)	130, 434, 455, 1731, 2092, 2107, 2270, 2939
BsaWI	WCCGGW	3 cut(s)	141, 628, 1775
BsaXI	ACNNNNNCTCC	2 cut(s)	2936, 2966
Bsc4I	CCNNNNNNNGG	9 cut(s)	136, 440, 2076, 2169, 2276, 2561, 2810, 2941, 2966
Bse118I	RCCGGY	2 cut(s)	53, 2169
Bse1I	ACTGG	8 cut(s)	910, 1370, 1579, 2039, 2576, 2823, 2834, 2971
Bse3DI	GCAATG	3 cut(s)	1337, 2476, 2660
Bse8I	GATNNNNATC	1 cut(s)	2143
BseAI	TCCGGA	2 cut(s)	628, 1775
BseBI	CCWGG	7 cut(s)	375, 401, 436, 927, 1202, 1632, 1938
BseDI	CCNNGG	8 cut(s)	130, 434, 455, 1731, 2092, 2107, 2270, 2939
BseGI	GGATG	9 cut(s)	30, 1175, 1727, 1954, 2014, 2566, 2643, 2905, 2935
BseJI	GATNNNNATC	1 cut(s)	2143
BseLI	CCNNNNNNNGG	9 cut(s)	136, 440, 2076, 2169, 2276, 2561, 2810, 2941, 2966
BseMI	GCAATG	3 cut(s)	1337, 2476, 2660
BseMII	CTCAG	3 cut(s)	1794, 1806, 2706
BseNI	ACTGG	8 cut(s)	910, 1370, 1579, 2039, 2576, 2823, 2834, 2971
BseRI	GAGGAG	2 cut(s)	12, 1922
BseSI	GKGCMC	1 cut(s)	2782
BseX3I	CGGCCG	2 cut(s)	133, 449
BseXI	GCAGC	5 cut(s)	937, 1614, 2284, 2839, 2930
BseYI	CCCAGC	2 cut(s)	1644, 2589
Bsh1236I	CGCG	6 cut(s)	87, 132, 159, 260, 1830, 2624
Bsh1285I	CGRYCG	4 cut(s)	91, 136, 185, 452
BshFI	GGCC	8 cut(s)	6, 135, 162, 451, 610, 2034, 2080, 2959
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	4 cut(s)	91, 136, 185, 452
BsiHKAI	GWGCWC	5 cut(s)	237, 287, 359, 424, 2782
BsiHKCI	CYCGRG	1 cut(s)	2809
BsiSI	CCGG	9 cut(s)	7, 54, 136, 142, 448, 629, 1776, 2070, 2170
BslFI	GGGAC	5 cut(s)	152, 154, 350, 1085, 1868
BslI	CCNNNNNNNGG	9 cut(s)	136, 440, 2076, 2169, 2276, 2561, 2810, 2941, 2966
BsmFI	GGGAC	5 cut(s)	152, 154, 350, 1085, 1868
BsmI	GAATGC	4 cut(s)	1090, 1196, 1469, 2164
BsnI	GGCC	8 cut(s)	6, 135, 162, 451, 610, 2034, 2080, 2959
BsoBI	CYCGRG	1 cut(s)	2809
Bsp1286I	GDGCHC	7 cut(s)	237, 287, 359, 414, 424, 435, 2782
Bsp13I	TCCGGA	2 cut(s)	628, 1775
Bsp1407I	TGTACA	1 cut(s)	1321
Bsp19I	CCATGG	1 cut(s)	2092
Bsp68I	TCGCGA	2 cut(s)	87, 2624
BspANI	GGCC	8 cut(s)	6, 135, 162, 451, 610, 2034, 2080, 2959
BspCNI	CTCAG	3 cut(s)	1795, 1807, 2707
BspEI	TCCGGA	2 cut(s)	628, 1775
BspFNI	CGCG	6 cut(s)	87, 132, 159, 260, 1830, 2624
BspLI	GGNNCC	9 cut(s)	21, 52, 110, 140, 492, 723, 931, 2068, 2712
BspMI	ACCTGC	1 cut(s)	1560
BspOI	GCTAGC	2 cut(s)	464, 1916
BspQI	GCTCTTC	2 cut(s)	2547, 2817
BspT107I	GGYRCC	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	1985
BsrBI	CCGCTC	1 cut(s)	2806
BsrDI	GCAATG	3 cut(s)	1337, 2476, 2660
BsrFI	RCCGGY	2 cut(s)	53, 2169
BsrGI	TGTACA	1 cut(s)	1321
BsrI	ACTGG	8 cut(s)	910, 1370, 1579, 2039, 2576, 2823, 2834, 2971
BssAI	RCCGGY	2 cut(s)	53, 2169
BssECI	CCNNGG	8 cut(s)	130, 434, 455, 1731, 2092, 2107, 2270, 2939
BssNI	GRCGYC	1 cut(s)	1266
BssT1I	CCWWGG	2 cut(s)	2092, 2270
Bst2UI	CCWGG	7 cut(s)	375, 401, 436, 927, 1202, 1632, 1938
Bst4CI	ACNGT	7 cut(s)	517, 893, 965, 1429, 1519, 2108, 2735
Bst6I	CTCTTC	6 cut(s)	19, 1747, 2547, 2817, 2885, 3003
BstACI	GRCGYC	1 cut(s)	1266
BstAFI	CTTAAG	1 cut(s)	1985
BstAUI	TGTACA	1 cut(s)	1321
BstBAI	YACGTR	1 cut(s)	584
BstC8I	GCNNGC	9 cut(s)	55, 431, 462, 1557, 1828, 1914, 2036, 2078, 2295
BstDEI	CTNAG	6 cut(s)	148, 839, 1803, 1815, 2114, 2715
BstDSI	CCRYGG	4 cut(s)	130, 1731, 2092, 2107
BstEII	GGTNACC	1 cut(s)	2930
BstF5I	GGATG	9 cut(s)	30, 1175, 1727, 1954, 2014, 2566, 2643, 2905, 2935
BstFNI	CGCG	6 cut(s)	87, 132, 159, 260, 1830, 2624
BstHHI	GCGC	1 cut(s)	177
BstMCI	CGRYCG	4 cut(s)	91, 136, 185, 452
BstMWI	GCNNNNNNNGC	7 cut(s)	129, 201, 457, 1973, 2086, 2918, 3094
BstNI	CCWGG	7 cut(s)	375, 401, 436, 927, 1202, 1632, 1938
BstNSI	RCATGY	1 cut(s)	2457
BstPAI	GACNNNNGTC	1 cut(s)	296
BstPI	GGTNACC	1 cut(s)	2930
BstSCI	CCNGG	9 cut(s)	135, 373, 399, 434, 925, 1200, 1630, 1936, 2069
BstSFI	CTRYAG	3 cut(s)	961, 1080, 1095
BstSLI	GKGCMC	1 cut(s)	2782
BstUI	CGCG	6 cut(s)	87, 132, 159, 260, 1830, 2624
BstV1I	GCAGC	5 cut(s)	937, 1614, 2284, 2839, 2930
BstV2I	GAAGAC	4 cut(s)	292, 773, 1540, 3098
BstX2I	RGATCY	4 cut(s)	490, 929, 2066, 2800
BstXI	CCANNNNNNTGG	2 cut(s)	407, 747
BstYI	RGATCY	4 cut(s)	490, 929, 2066, 2800
BstZI	CGGCCG	2 cut(s)	133, 449
BsuI	GTATCC	1 cut(s)	3074
BsuRI	GGCC	8 cut(s)	6, 135, 162, 451, 610, 2034, 2080, 2959
BtgI	CCRYGG	4 cut(s)	130, 1731, 2092, 2107
BtgZI	GCGATG	2 cut(s)	1100, 2639
BtrI	CACGTC	1 cut(s)	1217
BtsCI	GGATG	9 cut(s)	30, 1175, 1727, 1954, 2014, 2566, 2643, 2905, 2935
BtsIMutI	CAGTG	7 cut(s)	740, 898, 903, 1015, 2046, 2569, 2816
BtuMI	TCGCGA	2 cut(s)	87, 2624
BveI	ACCTGC	1 cut(s)	1560
Cac8I	GCNNGC	9 cut(s)	55, 431, 462, 1557, 1828, 1914, 2036, 2078, 2295
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	2 cut(s)	53, 2169
Cfr13I	GGNCC	6 cut(s)	4, 139, 608, 1100, 1634, 2448
Cfr42I	CCGCGG	1 cut(s)	133
CseI	GACGC	3 cut(s)	767, 817, 3103
Csp6I	GTAC	7 cut(s)	737, 1322, 1601, 1659, 1701, 2104, 2880
CspCI	CAANNNNNGTGG	4 cut(s)	483, 518, 2229, 2264
CviQI	GTAC	7 cut(s)	737, 1322, 1601, 1659, 1701, 2104, 2880
DdeI	CTNAG	6 cut(s)	148, 839, 1803, 1815, 2114, 2715
EaeI	YGGCCR	4 cut(s)	133, 449, 2078, 2957
EagI	CGGCCG	2 cut(s)	133, 449
Eam1104I	CTCTTC	6 cut(s)	19, 1747, 2547, 2817, 2885, 3003
EarI	CTCTTC	6 cut(s)	19, 1747, 2547, 2817, 2885, 3003
EciI	GGCGGA	1 cut(s)	15
Ecl136II	GAGCTC	2 cut(s)	285, 422
EclXI	CGGCCG	2 cut(s)	133, 449
Eco130I	CCWWGG	2 cut(s)	2092, 2270
Eco24I	GRGCYC	4 cut(s)	287, 414, 424, 435
Eco47I	GGWCC	4 cut(s)	139, 1100, 1634, 2448
Eco52I	CGGCCG	2 cut(s)	133, 449
Eco53kI	GAGCTC	2 cut(s)	285, 422
Eco57I	CTGAAG	6 cut(s)	286, 572, 1484, 1902, 2556, 2909
Eco88I	CYCGRG	1 cut(s)	2809
Eco91I	GGTNACC	1 cut(s)	2930
EcoICRI	GAGCTC	2 cut(s)	285, 422
EcoO65I	GGTNACC	1 cut(s)	2930
EcoRII	CCWGG	7 cut(s)	373, 399, 434, 925, 1200, 1630, 1936
EcoT14I	CCWWGG	2 cut(s)	2092, 2270
EcoT22I	ATGCAT	4 cut(s)	1092, 1198, 2503, 2662
EcoT38I	GRGCYC	4 cut(s)	287, 414, 424, 435
ErhI	CCWWGG	2 cut(s)	2092, 2270
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	5 cut(s)	152, 154, 350, 1085, 1868
FokI	GGATG	9 cut(s)	17, 1162, 1714, 1961, 2021, 2573, 2650, 2912, 2922
FriOI	GRGCYC	4 cut(s)	287, 414, 424, 435
FspBI	CTAG	9 cut(s)	68, 120, 461, 1031, 1220, 1704, 1847, 1898, 1913
GlaI	GCGC	1 cut(s)	176
GsaI	CCCAGC	2 cut(s)	1648, 2593
GsuI	CTGGAG	1 cut(s)	1613
HaeIII	GGCC	8 cut(s)	6, 135, 162, 451, 610, 2034, 2080, 2959
HapII	CCGG	9 cut(s)	7, 54, 136, 142, 448, 629, 1776, 2070, 2170
HgaI	GACGC	3 cut(s)	767, 817, 3103
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	1266
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	2 cut(s)	679, 2167
HindII	GTYRAC	2 cut(s)	679, 2167
HindIII	AAGCTT	1 cut(s)	1982
HinfI	GANTC	9 cut(s)	82, 680, 982, 1005, 1365, 1565, 1720, 2648, 2853
HpaII	CCGG	9 cut(s)	7, 54, 136, 142, 448, 629, 1776, 2070, 2170
HphI	GGTGA	3 cut(s)	182, 2605, 2942
Hpy166II	GTNNAC	7 cut(s)	679, 1423, 1601, 2167, 2780, 2794, 2816
Hpy8I	GTNNAC	7 cut(s)	679, 1423, 1601, 2167, 2780, 2794, 2816
Hpy99I	CGWCG	2 cut(s)	271, 419
HpyAV	CCTTC	6 cut(s)	372, 481, 659, 1133, 1459, 2620
HpyCH4III	ACNGT	7 cut(s)	517, 893, 965, 1429, 1519, 2108, 2735
HpyCH4IV	ACGT	4 cut(s)	583, 1216, 1266, 2882
HpyF10VI	GCNNNNNNNGC	7 cut(s)	129, 201, 457, 1973, 2086, 2918, 3094
HpyF3I	CTNAG	6 cut(s)	148, 839, 1803, 1815, 2114, 2715
HpySE526I	ACGT	4 cut(s)	583, 1216, 1266, 2882
Hsp92I	GRCGYC	1 cut(s)	1266
HspAI	GCGC	1 cut(s)	175
Kpn2I	TCCGGA	2 cut(s)	628, 1775
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
KspI	CCGCGG	1 cut(s)	133
LguI	GCTCTTC	2 cut(s)	2547, 2817
Lsp1109I	GCAGC	5 cut(s)	937, 1614, 2284, 2839, 2930
MaeI	CTAG	9 cut(s)	68, 120, 461, 1031, 1220, 1704, 1847, 1898, 1913
MaeII	ACGT	4 cut(s)	583, 1216, 1266, 2882
MaeIII	GTNAC	8 cut(s)	59, 2391, 2416, 2456, 2567, 2729, 2883, 2930
MbiI	CCGCTC	1 cut(s)	2806
MfeI	CAATTG	1 cut(s)	986
MflI	RGATCY	4 cut(s)	490, 929, 2066, 2800
MhlI	GDGCHC	7 cut(s)	237, 287, 359, 414, 424, 435, 2782
MlsI	TGGCCA	2 cut(s)	2080, 2959
MluNI	TGGCCA	2 cut(s)	2080, 2959
MlyI	GAGTC	1 cut(s)	674
MmeI	TCCRAC	2 cut(s)	1018, 1862
Mox20I	TGGCCA	2 cut(s)	2080, 2959
Mph1103I	ATGCAT	4 cut(s)	1092, 1198, 2503, 2662
MroI	TCCGGA	2 cut(s)	628, 1775
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	5 cut(s)	382, 1469, 1676, 2541, 2687
MscI	TGGCCA	2 cut(s)	2080, 2959
MseI	TTAA	4 cut(s)	1283, 1713, 1986, 2963
MslI	CAYNNNNRTG	2 cut(s)	745, 1666
Msp20I	TGGCCA	2 cut(s)	2080, 2959
MspA1I	CMGCKG	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	1985
MspI	CCGG	9 cut(s)	7, 54, 136, 142, 448, 629, 1776, 2070, 2170
MspR9I	CCNGG	9 cut(s)	137, 375, 401, 436, 927, 1202, 1632, 1938, 2071
MunI	CAATTG	1 cut(s)	986
Mva1269I	GAATGC	4 cut(s)	1090, 1196, 1469, 2164
MvaI	CCWGG	7 cut(s)	375, 401, 436, 927, 1202, 1632, 1938
MvnI	CGCG	6 cut(s)	87, 132, 159, 260, 1830, 2624
MwoI	GCNNNNNNNGC	7 cut(s)	129, 201, 457, 1973, 2086, 2918, 3094
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	2 cut(s)	137, 2071
NcoI	CCATGG	1 cut(s)	2092
NgoMIV	GCCGGC	1 cut(s)	53
NheI	GCTAGC	2 cut(s)	460, 1912
NlaIV	GGNNCC	9 cut(s)	21, 52, 110, 140, 492, 723, 931, 2068, 2712
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	4 cut(s)	2391, 2456, 2567, 2930
NruI	TCGCGA	2 cut(s)	87, 2624
NsiI	ATGCAT	4 cut(s)	1092, 1198, 2503, 2662
NspI	RCATGY	1 cut(s)	2457
PciSI	GCTCTTC	2 cut(s)	2547, 2817
PcsI	WCGNNNNNNNCGW	1 cut(s)	1966
PctI	GAATGC	4 cut(s)	1090, 1196, 1469, 2164
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	5 cut(s)	382, 1469, 1676, 2541, 2687
PfeI	GAWTC	8 cut(s)	82, 982, 1005, 1365, 1565, 1720, 2648, 2853
PflMI	CCANNNNNTGG	2 cut(s)	2561, 2966
PfoI	TCCNGGA	3 cut(s)	925, 1200, 2069
Ple19I	CGATCG	2 cut(s)	91, 185
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
Ppu21I	YACGTR	1 cut(s)	584
PshAI	GACNNNNGTC	1 cut(s)	296
PshBI	ATTAAT	2 cut(s)	1283, 1713
Psp124BI	GAGCTC	2 cut(s)	287, 424
Psp6I	CCWGG	7 cut(s)	373, 399, 434, 925, 1200, 1630, 1936
PspEI	GGTNACC	1 cut(s)	2930
PspFI	CCCAGC	2 cut(s)	1644, 2589
PspGI	CCWGG	7 cut(s)	373, 399, 434, 925, 1200, 1630, 1936
PspN4I	GGNNCC	9 cut(s)	21, 52, 110, 140, 492, 723, 931, 2068, 2712
PspPI	GGNCC	6 cut(s)	4, 139, 608, 1100, 1634, 2448
PsuI	RGATCY	4 cut(s)	490, 929, 2066, 2800
PvuI	CGATCG	2 cut(s)	91, 185
RruI	TCGCGA	2 cut(s)	87, 2624
RsaI	GTAC	7 cut(s)	738, 1323, 1602, 1660, 1702, 2105, 2881
RsaNI	GTAC	7 cut(s)	737, 1322, 1601, 1659, 1701, 2104, 2880
RseI	CAYNNNNRTG	2 cut(s)	745, 1666
SacI	GAGCTC	2 cut(s)	287, 424
SacII	CCGCGG	1 cut(s)	133
SapI	GCTCTTC	2 cut(s)	2547, 2817
SaqAI	TTAA	4 cut(s)	1283, 1713, 1986, 2963
Sau96I	GGNCC	6 cut(s)	4, 139, 608, 1100, 1634, 2448
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	9 cut(s)	137, 375, 401, 436, 927, 1202, 1632, 1938, 2071
SduI	GDGCHC	7 cut(s)	237, 287, 359, 414, 424, 435, 2782
SfcI	CTRYAG	3 cut(s)	961, 1080, 1095
Sfr303I	CCGCGG	1 cut(s)	133
SgrBI	CCGCGG	1 cut(s)	133
SinI	GGWCC	4 cut(s)	139, 1100, 1634, 2448
SmiMI	CAYNNNNRTG	2 cut(s)	745, 1666
SmlI	CTYRAG	5 cut(s)	361, 1861, 1985, 2021, 2615
SmoI	CTYRAG	5 cut(s)	361, 1861, 1985, 2021, 2615
SspI	AATATT	3 cut(s)	1406, 2488, 2870
SspMI	CTAG	9 cut(s)	68, 120, 461, 1031, 1220, 1704, 1847, 1898, 1913
SstI	GAGCTC	2 cut(s)	287, 424
StyD4I	CCNGG	9 cut(s)	135, 373, 399, 434, 925, 1200, 1630, 1936, 2069
StyI	CCWWGG	2 cut(s)	2092, 2270
TaaI	ACNGT	7 cut(s)	517, 893, 965, 1429, 1519, 2108, 2735
TaiI	ACGT	4 cut(s)	586, 1219, 1269, 2885
TaqI	TCGA	6 cut(s)	80, 414, 656, 939, 1413, 1513
TaqII	GACCGA	1 cut(s)	286
TatI	WGTACW	2 cut(s)	1321, 1600
TauI	GCSGC	5 cut(s)	135, 162, 263, 266, 454
TfiI	GAWTC	8 cut(s)	82, 982, 1005, 1365, 1565, 1720, 2648, 2853
Tru1I	TTAA	4 cut(s)	1283, 1713, 1986, 2963
Tru9I	TTAA	4 cut(s)	1283, 1713, 1986, 2963
TscAI	CASTG	7 cut(s)	747, 898, 910, 1015, 2046, 2576, 2823
TseFI	GTSAC	4 cut(s)	2391, 2456, 2567, 2930
TseI	GCWGC	5 cut(s)	950, 1627, 2297, 2827, 2918
Tsp45I	GTSAC	4 cut(s)	2391, 2456, 2567, 2930
TspGWI	ACGGA	6 cut(s)	121, 220, 432, 607, 1337, 1720
TspRI	CASTG	7 cut(s)	747, 898, 910, 1015, 2046, 2576, 2823
Van91I	CCANNNNNTGG	2 cut(s)	2561, 2966
Vha464I	CTTAAG	1 cut(s)	1985
VneI	GTGCAC	1 cut(s)	2778
VpaK11BI	GGWCC	4 cut(s)	139, 1100, 1634, 2448
VspI	ATTAAT	2 cut(s)	1283, 1713
XapI	RAATTY	7 cut(s)	1151, 1505, 1606, 1672, 1819, 2686, 2988
XceI	RCATGY	1 cut(s)	2457
XmnI	GAANNNNTTC	5 cut(s)	382, 1469, 1676, 2541, 2687
XspI	CTAG	9 cut(s)	68, 120, 461, 1031, 1220, 1704, 1847, 1898, 1913
ZraI	GACGTC	1 cut(s)	1267
Zsp2I	ATGCAT	4 cut(s)	1092, 1198, 2503, 2662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.