Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005129

Physical Location & Seq

Genomic Coordinates Reverse (-)

5228190 .. 5228944

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGCCTTGCGTTCGTCTGTTTTGATTTTTTACTTTGTGGCCGGGCCACCTTGCAAGCCTTGGGTAGGTCCTTGCAATGGGCGAAACTCATTGTCTCTCCAGCTATCCTCGACGACAGTGGCGGTGCTGACGGTACCGATCTCGGTTTCCACTCGGTTCGCGATCATTTTCCTCTCAAGCGGAACCCTTACCCTAGCCACCAGAAAGACCCAGCCAGGGGGGGCTTCACGGTGGTGTTGCAGAGCTCCATGACATTGGCCTTCAGGCAAGGGAGTGAGAAAGGGCGCTTGCTCAGGGAAGGCTTGAAGTTTGGGAGCACCTTGAGGTTTGTGCCTGGGAGGGTTTCGAGAAGGTTCGTGGAGGGTGATGGACTTGATCGGGCTCGAAAGGAGGCGAGGATTGGTGTTCGCCCGCCGAGGCTCGCTCTTGTGAGTGTCATTTTCTTGCTGCATTTGCTTGAATCTGAATTGTTTGTTATGAATTTACAATTTGAAATTACATTTCGTAGTAATCGTGTTTATCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glycos_transf_1

Protein Analysis

177

Amino Acids

19.7

Weight (kDa)

10.38

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04480 AT5G04480
fragaria_vesca	FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830
malus_domestica	MD02G1241600.v1.1 MD07G1075100.v1.1
prunus_persica	Prupe.2G095400_v2.0.a1 Prupe.2G095400_v2.0.a1
pyrus_communis	pycom01g10260 pycom02g20700 pycom02g20720 pycom02g20730 pycom02g20780 pycom07g05910
rosa_chinensis	RchiOBHm_Chr1g0336581
rosa_laevigata	RLG00000029353
rosa_multiflora	Rmu_sc0009324.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315490
rosa_rugosa	Rorug01G0126500 Rorug01G0126600
rosa_samantha	Rh1AG147700 Rh1BG115500 Rh1CG139100 Rh1DG154200
rosa_wichuraiana	Rw1G011930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	1 cut(s)	162
AciI	CCGC	3 cut(s)	123, 181, 413
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	4 cut(s)	66, 78, 217, 218
AgsI	TTSAA	3 cut(s)	307, 461, 494
AjnI	CCWGG	2 cut(s)	215, 334
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	104, 246
AluI	AGCT	2 cut(s)	104, 246
Alw21I	GWGCWC	2 cut(s)	248, 320
Alw26I	GTCTC	1 cut(s)	100
AoxI	GGCC	4 cut(s)	4, 40, 45, 258
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	1 cut(s)	481
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	3 cut(s)	4, 45, 69
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	248, 385
Bbv12I	GWGCWC	2 cut(s)	248, 320
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	217, 336
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	289
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
Bme1390I	CCNGG	3 cut(s)	44, 217, 336
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	4, 45, 69
BmiI	GGNNCC	2 cut(s)	136, 185
BmrFI	CCNGG	3 cut(s)	44, 217, 336
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
BpmI	CTGGAG	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	293
BpuEI	CTTGAG	2 cut(s)	161, 343
BpuMI	CCSGG	1 cut(s)	44
BsaJI	CCNNGG	4 cut(s)	60, 216, 335, 416
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 78, 217, 218
Bse3DI	GCAATG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	217, 336
BseDI	CCNNGG	4 cut(s)	60, 216, 335, 416
BseLI	CCNNNNNNNGG	4 cut(s)	66, 78, 217, 218
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	435
BseYI	CCCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	6, 42, 47, 260
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	2 cut(s)	248, 320
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	4 cut(s)	66, 78, 217, 218
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	4 cut(s)	6, 42, 47, 260
Bsp1286I	GDGCHC	3 cut(s)	248, 320, 385
Bsp143I	GATC	3 cut(s)	139, 163, 376
Bsp68I	TCGCGA	1 cut(s)	162
BspACI	CCGC	3 cut(s)	123, 181, 413
BspANI	GGCC	4 cut(s)	6, 42, 47, 260
BspCNI	CTCAG	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	136, 185
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	83
BssECI	CCNNGG	4 cut(s)	60, 216, 335, 416
BssMI	GATC	3 cut(s)	139, 163, 376
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	217, 336
Bst4CI	ACNGT	3 cut(s)	119, 134, 232
BstC8I	GCNNGC	4 cut(s)	57, 290, 413, 423
BstDEI	CTNAG	1 cut(s)	293
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	3 cut(s)	142, 166, 379
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	3 cut(s)	139, 163, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNI	CCWGG	2 cut(s)	217, 336
BstSCI	CCNGG	3 cut(s)	42, 215, 334
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	256
BsuRI	GGCC	4 cut(s)	6, 42, 47, 260
BtsIMutI	CAGTG	1 cut(s)	124
BtuMI	TCGCGA	1 cut(s)	162
Cac8I	GCNNGC	4 cut(s)	57, 290, 413, 423
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	3 cut(s)	4, 45, 69
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	3 cut(s)	141, 165, 378
DpnII	GATC	3 cut(s)	139, 163, 376
EaeI	YGGCCR	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	2 cut(s)	248, 385
Eco47I	GGWCC	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	215, 334
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	248, 385
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	253
FaiI	YATR	2 cut(s)	251, 479
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	420
Fnu4HI	GCNGC	1 cut(s)	449
FriOI	GRGCYC	2 cut(s)	248, 385
Fsp4HI	GCNGC	1 cut(s)	449
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	449
GsaI	CCCAGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	4 cut(s)	6, 42, 47, 260
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	2 cut(s)	161, 348
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	271, 293, 345
HpyCH4III	ACNGT	3 cut(s)	119, 134, 232
HpyCH4V	TGCA	4 cut(s)	55, 76, 241, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	286
KpnI	GGTACC	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	139, 163, 376
LmnI	GCTCC	2 cut(s)	251, 315
Lsp1109I	GCAGC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	195
MalI	GATC	3 cut(s)	141, 165, 378
MboI	GATC	3 cut(s)	139, 163, 376
MhlI	GDGCHC	3 cut(s)	248, 320, 385
MluCI	AATT	4 cut(s)	467, 481, 488, 495
MnlI	CCTC	8 cut(s)	119, 183, 318, 333, 355, 385, 390, 411
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	3 cut(s)	44, 217, 336
MvaI	CCWGG	2 cut(s)	217, 336
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	454
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	3 cut(s)	139, 163, 376
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	136, 185
NmeAIII	GCCGAG	1 cut(s)	441
NruI	TCGCGA	1 cut(s)	162
OliI	CACNNNNGTG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	450
PpuMI	RGGWCCY	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	215, 334
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	2 cut(s)	215, 334
PspN4I	GGNNCC	2 cut(s)	136, 185
PspPI	GGNCC	3 cut(s)	4, 45, 69
PspPPI	RGGWCCY	1 cut(s)	69
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	248
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	3 cut(s)	139, 163, 376
Sau96I	GGNCC	3 cut(s)	4, 45, 69
ScrFI	CCNGG	3 cut(s)	44, 217, 336
SduI	GDGCHC	3 cut(s)	248, 320, 385
SetI	ASST	7 cut(s)	53, 71, 106, 248, 323, 329, 356
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	176, 322
SmoI	CTYRAG	2 cut(s)	176, 322
Sse9I	AATT	4 cut(s)	467, 481, 488, 495
SsiI	CCGC	3 cut(s)	123, 181, 413
SspMI	CTAG	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	3 cut(s)	42, 215, 334
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	119, 134, 232
TaqI	TCGA	3 cut(s)	111, 347, 385
TasI	AATT	4 cut(s)	467, 481, 488, 495
TfiI	GAWTC	1 cut(s)	461
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	448
TspDTI	ATGAA	1 cut(s)	494
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	69
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	481
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.