Rorug01G0126500

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005129
Physical Location & Seq
Forward (+)
21578121 .. 21583901
5781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0126500.1

Sequence Viewer

Length: 918 bp
ATGGAAACAAAGGGAAGGTCCATGATCTTGTACTTGTGGGTTTTGATTGTAGCCATTCTTGTTAATCCTGGTCATTCGTCGTATCCCCGGGAATCGTTTAACGGAAGAAATACCTGTAAGTCTTCTTCATGTGGAAATATCCCCAACATAAGCTACCCTTTTCGACTAAAAGATGATCCAAAGCACTGCGGCCAGTTAGCCTTTACACTCACTTGTGAGAACAACATTACCCTCTTGGACTTGCCTTCATATGGGAAATTCTATGTGCAGGCAATCCACTACCATAACCAAACAATCCGACTAATAGATCCAAGCCTACTTCACAACTCCACTATACCTCGTAATTTATTTCCCCCGACTGTGTATGATTTTCCATTTCGACTATACGATTACGGACTTGTGGGGGGGTACTGGATATCAACACCTATAATTTTCCTCAAGTGCGTCAATCCGATTGTAAATACTTCATTATTGTACGTGGACACTGCGCCATGTGTTGACGTCACCGATGGGTATGGTTATTTTAAGATTGGTGATATGACATTCGGGGATTGGAACGAGGGCTGTAGTCTTGACTGGATCGCTTTCACTTTGTTGAACATCTCAGAAAACTACAACGCAACTTGCAGATACATACACAATGCACTCACGATTGGGTTTCAGTTGCAATATGATGATGATCAAAGTTTGGAAGATCATTACAAGGAACTAAATAGATGTCAAGGCAAGTGGCATGTTTTTGGTAGATGTTTTCCACATAGCATCCGAGGCTTGGTCCAACTTCTGCGTCAGAGTATTAAAGAATTCTTTTCTACTGAAGAAACGACGCATGTACTATGGATAACTATCAAAAGTATTGAATATCGTAGGCTACGTCTCATTCTCATTGGTACGAGCTCCATCCTACCTTTATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glycos_transf_1

Protein Analysis

305

Amino Acids

35.19

Weight (kDa)

6.78

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 39 - 103 5.6e-20 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 504
AciI CCGC 1 cut(s) 189
AclWI GGATC 3 cut(s) 170, 302, 587
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 257, 803
AcuI CTGAAG 1 cut(s) 837
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 5 cut(s) 32, 410, 476, 834, 892
AfiI CCNNNNNNNGG 2 cut(s) 251, 772
AgsI TTSAA 2 cut(s) 598, 860
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 153, 897
AluI AGCT 2 cut(s) 153, 897
Alw21I GWGCWC 1 cut(s) 899
Alw26I GTCTC 1 cut(s) 881
AlwI GGATC 3 cut(s) 170, 302, 587
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 1 cut(s) 190
ApoI RAATTY 2 cut(s) 257, 803
ArsI GACNNNNNNTTYG 1 cut(s) 34
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 2 cut(s) 18, 775
AsuC2I CCSGG 2 cut(s) 88, 89
AsuHPI GGTGA 2 cut(s) 496, 545
AvaI CYCGRG 1 cut(s) 87
AvaII GGWCC 2 cut(s) 18, 775
BanII GRGCYC 1 cut(s) 899
BarI GAAGNNNNNNTAC 2 cut(s) 109, 141
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 899
BccI CCATC 2 cut(s) 503, 908
BciT130I CCWGG 1 cut(s) 69
BciVI GTATCC 1 cut(s) 93
BclI TGATCA 1 cut(s) 679
BcnI CCSGG 2 cut(s) 88, 89
BcoDI GTCTC 1 cut(s) 881
BfmI CTRYAG 1 cut(s) 565
BfuI GTATCC 1 cut(s) 93
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
Bme1390I CCNGG 3 cut(s) 69, 88, 89
Bme18I GGWCC 2 cut(s) 18, 775
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 18, 775
BmrFI CCNGG 3 cut(s) 69, 88, 89
BmsI GCATC 1 cut(s) 771
BpiI GAAGAC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 88, 89
BsaAI YACGTR 1 cut(s) 478
BsaBI GATNNNNATC 2 cut(s) 678, 845
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 86, 87, 766
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 772
Bse1I ACTGG 3 cut(s) 193, 416, 581
Bse8I GATNNNNATC 2 cut(s) 678, 845
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 3 cut(s) 86, 87, 766
BseGI GGATG 2 cut(s) 762, 900
BseJI GATNNNNATC 2 cut(s) 678, 845
BseLI CCNNNNNNNGG 2 cut(s) 251, 772
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 3 cut(s) 193, 416, 581
BsgI GTGCAG 1 cut(s) 287
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 899
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 251, 772
BsmAI GTCTC 1 cut(s) 881
BsmBI CGTCTC 1 cut(s) 881
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 899
Bsp143I GATC 6 cut(s) 24, 175, 307, 579, 679, 694
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 617
BspPI GGATC 3 cut(s) 170, 302, 587
BsrI ACTGG 3 cut(s) 193, 416, 581
BssECI CCNNGG 3 cut(s) 86, 87, 766
BssMI GATC 6 cut(s) 24, 175, 307, 579, 679, 694
BssNI GRCGYC 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 361
BstACI GRCGYC 1 cut(s) 501
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 604
BstF5I GGATG 2 cut(s) 762, 900
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 6 cut(s) 27, 178, 310, 582, 682, 697
BstMAI GTCTC 1 cut(s) 881
BstMBI GATC 6 cut(s) 24, 175, 307, 579, 679, 694
BstMWI GCNNNNNNNGC 1 cut(s) 768
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 2 cut(s) 737, 833
BstSCI CCNGG 3 cut(s) 67, 86, 87
BstSFI CTRYAG 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuI GTATCC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 762, 900
BtsI GCAGTG 2 cut(s) 184, 483
BtsIMutI CAGTG 2 cut(s) 184, 483
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 2 cut(s) 18, 775
Cfr9I CCCGGG 1 cut(s) 87
CseI GACGC 3 cut(s) 433, 776, 835
Csp6I GTAC 5 cut(s) 31, 409, 475, 833, 891
CspCI CAANNNNNGTGG 2 cut(s) 710, 745
CviAII CATG 5 cut(s) 22, 129, 492, 734, 830
CviJI RGCY 9 cut(s) 53, 153, 192, 200, 315, 564, 771, 871, 897
CviKI_1 RGCY 9 cut(s) 53, 153, 192, 200, 315, 564, 771, 871, 897
CviQI GTAC 5 cut(s) 31, 409, 475, 833, 891
DdeI CTNAG 1 cut(s) 604
DpnI GATC 6 cut(s) 26, 177, 309, 581, 681, 696
DpnII GATC 6 cut(s) 24, 175, 307, 579, 679, 694
EaeI YGGCCR 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 897
Eco24I GRGCYC 1 cut(s) 899
Eco32I GATATC 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 18, 775
Eco53kI GAGCTC 1 cut(s) 897
Eco57I CTGAAG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 897
EcoRI GAATTC 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 67
EcoRV GATATC 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 899
Esp3I CGTCTC 1 cut(s) 881
FaeI CATG 5 cut(s) 25, 132, 495, 737, 833
FalI AAGNNNNNCTT 2 cut(s) 142, 174
FatI CATG 5 cut(s) 21, 128, 491, 733, 829
FauNDI CATATG 1 cut(s) 250
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 2 cut(s) 749, 887
FriOI GRGCYC 1 cut(s) 899
Fsp4HI GCNGC 1 cut(s) 190
GlaI GCGC 1 cut(s) 489
GluI GCNGC 1 cut(s) 190
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 88
HgaI GACGC 3 cut(s) 433, 776, 835
HhaI GCGC 1 cut(s) 490
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 5 cut(s) 25, 132, 495, 737, 833
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 88
HphI GGTGA 2 cut(s) 496, 545
Hpy166II GTNNAC 2 cut(s) 481, 499
Hpy188I TCNGA 5 cut(s) 299, 453, 607, 767, 792
Hpy188III TCNNGA 2 cut(s) 572, 649
Hpy8I GTNNAC 2 cut(s) 481, 499
Hpy99I CGWCG 2 cut(s) 82, 829
HpyAV CCTTC 2 cut(s) 9, 255
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 3 cut(s) 477, 501, 874
HpyCH4V TGCA 4 cut(s) 268, 627, 644, 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 768
HpyF3I CTNAG 1 cut(s) 604
HpySE526I ACGT 3 cut(s) 477, 501, 874
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 5 cut(s) 25, 132, 495, 737, 833
HspAI GCGC 1 cut(s) 488
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 6 cut(s) 24, 175, 307, 579, 679, 694
LmnI GCTCC 1 cut(s) 902
LpnPI CCDG 8 cut(s) 54, 81, 101, 127, 206, 254, 397, 562
LweI GCATC 1 cut(s) 771
MaeII ACGT 3 cut(s) 477, 501, 874
MaeIII GTNAC 1 cut(s) 502
MalI GATC 6 cut(s) 26, 177, 309, 581, 681, 696
MboI GATC 6 cut(s) 24, 175, 307, 579, 679, 694
MboII GAAGA 5 cut(s) 114, 117, 117, 704, 830
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 899
MluCI AATT 4 cut(s) 257, 343, 429, 803
MmeI TCCRAC 2 cut(s) 322, 802
MnlI CCTC 5 cut(s) 242, 348, 446, 553, 761
MseI TTAA 4 cut(s) 63, 99, 525, 798
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 3 cut(s) 69, 88, 89
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 768
NciI CCSGG 2 cut(s) 88, 89
NdeI CATATG 1 cut(s) 250
NdeII GATC 6 cut(s) 24, 175, 307, 579, 679, 694
NlaIII CATG 5 cut(s) 25, 132, 495, 737, 833
NmuCI GTSAC 1 cut(s) 502
NspI RCATGY 2 cut(s) 737, 833
PcsI WCGNNNNNNNCGW 1 cut(s) 871
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 478
Psp124BI GAGCTC 1 cut(s) 899
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspPI GGNCC 2 cut(s) 18, 775
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 5 cut(s) 32, 410, 476, 834, 892
RsaNI GTAC 5 cut(s) 31, 409, 475, 833, 891
SacI GAGCTC 1 cut(s) 899
SaqAI TTAA 4 cut(s) 63, 99, 525, 798
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 6 cut(s) 24, 175, 307, 579, 679, 694
Sau96I GGNCC 2 cut(s) 18, 775
ScrFI CCNGG 3 cut(s) 69, 88, 89
SduI GDGCHC 1 cut(s) 899
SfaNI GCATC 1 cut(s) 771
SfcI CTRYAG 1 cut(s) 565
SinI GGWCC 2 cut(s) 18, 775
SmaI CCCGGG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 4 cut(s) 257, 343, 429, 803
SsiI CCGC 1 cut(s) 189
SstI GAGCTC 1 cut(s) 899
StyD4I CCNGG 3 cut(s) 67, 86, 87
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 3 cut(s) 480, 504, 877
TaqI TCGA 2 cut(s) 163, 379
TasI AATT 4 cut(s) 257, 343, 429, 803
TatI WGTACW 2 cut(s) 30, 832
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 4 cut(s) 63, 99, 525, 798
Tru9I TTAA 4 cut(s) 63, 99, 525, 798
TscAI CASTG 2 cut(s) 191, 490
TseFI GTSAC 1 cut(s) 502
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 3 cut(s) 117, 237, 456
TspGWI ACGGA 2 cut(s) 117, 408
TspMI CCCGGG 1 cut(s) 87
TspRI CASTG 2 cut(s) 191, 490
VpaK11BI GGWCC 2 cut(s) 18, 775
XapI RAATTY 2 cut(s) 257, 803
XceI RCATGY 2 cut(s) 737, 833
XmaI CCCGGG 1 cut(s) 87
ZraI GACGTC 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.