MD07G1100100.v1.1

DnaJ central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015685
Physical Location & Seq
Reverse (-)
11019636 .. 11024841
5206 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1100100.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGTTTGGCGGCTTTGGCCATGCTGCAAGGAAGAGTGATAACACCAAATATTATGGGGTTCTTGGTGTGCCTAAAAGTGCAAGTGCAGACGAGCTCAAGAAGGCATATAAGAAAGCTGCTATCAAGAATCATCCAGACAAAGGTGGAGATCCTGAGAAGTTCAAGGAATTAGGTCAAGCTTATGAAGTTCTCAGTAATCCAGAAAAGAGAGAAATCTATGACGAATACGGTGAAGATGGTCTTAAGGAGGGAGCGGGAGGTGGTAGTACCTCACATAATCCATTTGATTTATTTGAAACGTTTCTCAATCCCCGCTATCGTTCACATGTAAGAAGGCAGAAGCAAGGTGAAGATGTGGTGCATACCTTAAAGGTTTCTTTGGAGGACTTGTATAATGGCACGACAAAAAAACTCTCTCTTTCTCTGAATATTTTGTGTACAAAATGTAAAGGGAAAGGCTCGAAGAGCGGAAACTCAGGGAGATGTTATGGATGCCAAGGTACTGGAATGAAGATTACAACACGGTCGATTGGATTGGGCATGATTCAACAGATGCAACATATCTGCCCTGAATGTCAAGGCTCCGGTGAAGTCATCAGTGAAAGAGATAAATGCCCACCATGCAAAGGTAAGAAGATTACTCAAGAAAAGAAGGTGATGGATGTGCACGTGGAGAAAGGGATGGAGCACGGTGAGAAAATTTTGTTCGAGGGACAGGCTGATGAAGCTCCTGATACAATTACTGGAGACATTGTTTTTGTATTGCAACTCAAGGACCACGCCAAGTTCAAGCGAAAGTTTGATGATCTTTACGTAGAGCACACTCTCAATTTAACTGAGGCTCTTTGTGGGTTCCAGTTTGCATTGACCCATCTTGATGGCAGGCAGCTACTTGTCAAATCAAATCCCGGAGAAGTCATCAAGCCTGGTCAATCGAAAGCAATCAATGATGAGGGCATGCCTCATCACCAGAGGCCATTCATAAAGGGCAAGCTTTACATCCACTTCAATGTAGAGTTTCCAGACTCTGGGATTCTTTCTCCTCATCAATCCCAAATGTTGCAGACAGTACTAGACCCCAGGCATAGCAAGAAGTTGACTGACATGGAGCTGGATAAGTGTGAGGAAACCACCTTGCATGATGTCAACATTGAGGATGAGATGAGGCGTAAACCAAGACAGCAGTATCGGGAGGCGTATGATGAAGATGATGAAGATGATGAAGAGTCAATGCCACGGGTGCAGTGTGCTCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

420

Amino Acids

47.17

Weight (kDa)

6.4

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 16 - 74 4.8e-22 DnaJ domain
DnaJ_C PF01556 120 - 341 7.9e-36 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 146 - 212 2.2e-14 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g09580
malus_domestica MD07G1100100.v1.1
prunus_persica Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1
pyrus_communis pycom07g08230
rosa_chinensis RchiOBHm_Chr1g0346511
rosa_laevigata RLG00000028797
rosa_multiflora Rmu_sc0001734.1_g000001
rosa_roxburghii Rroxscaffold_4G00308490
rosa_rugosa Rorug01G0180500 Rorug01G0180600
rosa_samantha Rh1BG166200 Rh1CG184500 Rh1DG197100
rosa_wichuraiana Rw1G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1028
AccBSI CCGCTC 2 cut(s) 254, 468
AciI CCGC 4 cut(s) 9, 254, 313, 468
AclI AACGTT 1 cut(s) 299
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 16
AcsI RAATTY 1 cut(s) 699
AcvI CACGTG 1 cut(s) 670
AfaI GTAC 4 cut(s) 268, 439, 502, 1071
AfiI CCNNNNNNNGG 3 cut(s) 140, 626, 1028
AflII CTTAAG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 5 cut(s) 163, 296, 548, 790, 1009
AjnI CCWGG 2 cut(s) 925, 1079
AluBI AGCT 7 cut(s) 94, 116, 179, 728, 889, 994, 1111
AluI AGCT 7 cut(s) 94, 116, 179, 728, 889, 994, 1111
Alw21I GWGCWC 5 cut(s) 96, 669, 690, 822, 1252
Alw26I GTCTC 1 cut(s) 741
Alw44I GTGCAC 1 cut(s) 665
AlwI GGATC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 1028
AoxI GGCC 2 cut(s) 16, 974
ApaLI GTGCAC 1 cut(s) 665
ApeKI GCWGC 3 cut(s) 23, 116, 886
ApoI RAATTY 1 cut(s) 699
ArsI GACNNNNNNTTYG 2 cut(s) 740, 772
Asp700I GAANNNNTTC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 775
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 6 cut(s) 242, 359, 599, 667, 704, 959
AvaII GGWCC 1 cut(s) 775
BaeGI GKGCMC 1 cut(s) 669
BaeI ACNNNNGTAYC 2 cut(s) 1169, 1202
BalI TGGCCA 1 cut(s) 18
BanII GRGCYC 1 cut(s) 96
BbrPI CACGTG 1 cut(s) 670
Bbv12I GWGCWC 5 cut(s) 96, 669, 690, 822, 1252
BbvI GCAGC 3 cut(s) 10, 103, 898
BccI CCATC 5 cut(s) 230, 652, 676, 872, 879
BciT130I CCWGG 2 cut(s) 927, 1081
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 1 cut(s) 1073
BfrI CTTAAG 1 cut(s) 242
BisI GCNGC 4 cut(s) 10, 24, 117, 887
BlpI GCTNAGC 1 cut(s) 1251
BlsI GCNGC 4 cut(s) 11, 25, 118, 888
BmcAI AGTACT 1 cut(s) 1071
Bme1390I CCNGG 3 cut(s) 909, 927, 1081
Bme18I GGWCC 1 cut(s) 775
BmgT120I GGNCC 1 cut(s) 775
BmiI GGNNCC 2 cut(s) 583, 854
BmrFI CCNGG 3 cut(s) 909, 927, 1081
BmsI GCATC 2 cut(s) 482, 543
BpmI CTGGAG 1 cut(s) 765
Bpu1102I GCTNAGC 1 cut(s) 1251
BpuEI CTTGAG 3 cut(s) 80, 627, 755
BpuMI CCSGG 1 cut(s) 909
BsaAI YACGTR 2 cut(s) 670, 814
BsaJI CCNNGG 3 cut(s) 496, 1079, 1235
BsaWI WCCGGW 1 cut(s) 584
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 738, 768
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 626, 1028
Bse1I ACTGG 3 cut(s) 508, 748, 856
BseBI CCWGG 2 cut(s) 927, 1081
BseDI CCNNGG 3 cut(s) 496, 1079, 1235
BseGI GGATG 6 cut(s) 130, 497, 667, 687, 999, 1162
BseLI CCNNNNNNNGG 3 cut(s) 140, 626, 1028
BseMII CTCAG 4 cut(s) 144, 205, 489, 828
BseNI ACTGG 3 cut(s) 508, 748, 856
BseRI GAGGAG 1 cut(s) 1032
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 3 cut(s) 10, 103, 898
BsgI GTGCAG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 527
BshFI GGCC 2 cut(s) 18, 976
BsiEI CGRYCG 1 cut(s) 527
BsiHKAI GWGCWC 5 cut(s) 96, 669, 690, 822, 1252
BsiSI CCGG 2 cut(s) 585, 909
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 3 cut(s) 140, 626, 1028
BsmAI GTCTC 1 cut(s) 741
BsmFI GGGAC 1 cut(s) 726
BsnI GGCC 2 cut(s) 18, 976
Bsp1286I GDGCHC 5 cut(s) 96, 669, 690, 822, 1252
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 2 cut(s) 148, 805
Bsp1720I GCTNAGC 1 cut(s) 1251
BspACI CCGC 4 cut(s) 9, 254, 313, 468
BspANI GGCC 2 cut(s) 18, 976
BspCNI CTCAG 4 cut(s) 145, 204, 488, 829
BspLI GGNNCC 2 cut(s) 583, 854
BspPI GGATC 1 cut(s) 143
BspQI GCTCTTC 1 cut(s) 458
BspTI CTTAAG 1 cut(s) 242
BsrBI CCGCTC 2 cut(s) 254, 468
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 3 cut(s) 508, 748, 856
BssECI CCNNGG 3 cut(s) 496, 1079, 1235
BssMI GATC 2 cut(s) 148, 805
BssT1I CCWWGG 1 cut(s) 496
Bst2UI CCWGG 2 cut(s) 927, 1081
Bst4CI ACNGT 4 cut(s) 230, 525, 692, 1069
Bst6I CTCTTC 3 cut(s) 26, 458, 1218
BstAFI CTTAAG 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 437
BstBAI YACGTR 2 cut(s) 670, 814
BstC8I GCNNGC 3 cut(s) 884, 959, 992
BstDEI CTNAG 5 cut(s) 153, 191, 475, 837, 1251
BstDSI CCRYGG 1 cut(s) 1235
BstF5I GGATG 6 cut(s) 130, 497, 667, 687, 999, 1162
BstKTI GATC 2 cut(s) 151, 808
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 2 cut(s) 148, 805
BstMCI CGRYCG 1 cut(s) 527
BstMWI GCNNNNNNNGC 5 cut(s) 15, 465, 621, 725, 1240
BstNI CCWGG 2 cut(s) 927, 1081
BstNSI RCATGY 2 cut(s) 329, 961
BstSCI CCNGG 3 cut(s) 907, 925, 1079
BstSLI GKGCMC 1 cut(s) 669
BstSNI TACGTA 1 cut(s) 814
BstV1I GCAGC 3 cut(s) 10, 103, 898
BstX2I RGATCY 1 cut(s) 148
BstXI CCANNNNNNTGG 2 cut(s) 503, 878
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 2 cut(s) 18, 976
BtgI CCRYGG 1 cut(s) 1235
BtsCI GGATG 6 cut(s) 130, 497, 667, 687, 999, 1162
BtsI GCAGTG 1 cut(s) 1250
BtsIMutI CAGTG 2 cut(s) 604, 1250
Cac8I GCNNGC 3 cut(s) 884, 959, 992
CaiI CAGNNNCTG 1 cut(s) 1028
Cfr13I GGNCC 1 cut(s) 775
Csp6I GTAC 4 cut(s) 267, 438, 501, 1070
CviAII CATG 7 cut(s) 20, 326, 541, 621, 958, 1105, 1139
CviQI GTAC 4 cut(s) 267, 438, 501, 1070
DdeI CTNAG 5 cut(s) 153, 191, 475, 837, 1251
DpnI GATC 2 cut(s) 150, 807
DpnII GATC 2 cut(s) 148, 805
EaeI YGGCCR 1 cut(s) 16
Eam1104I CTCTTC 3 cut(s) 26, 458, 1218
EarI CTCTTC 3 cut(s) 26, 458, 1218
Ecl136II GAGCTC 1 cut(s) 94
Eco105I TACGTA 1 cut(s) 814
Eco130I CCWWGG 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 775
Eco53kI GAGCTC 1 cut(s) 94
Eco72I CACGTG 1 cut(s) 670
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 925, 1079
EcoT14I CCWWGG 1 cut(s) 496
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 7 cut(s) 23, 329, 544, 624, 961, 1108, 1142
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 1 cut(s) 726
FatI CATG 7 cut(s) 19, 325, 540, 620, 957, 1104, 1138
FauI CCCGC 2 cut(s) 247, 320
Fnu4HI GCNGC 4 cut(s) 10, 24, 117, 887
FokI GGATG 6 cut(s) 117, 504, 674, 694, 986, 1169
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 4 cut(s) 10, 24, 117, 887
FspBI CTAG 1 cut(s) 1073
GluI GCNGC 4 cut(s) 10, 24, 117, 887
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 2 cut(s) 18, 976
HapII CCGG 2 cut(s) 585, 909
Hin1II CATG 7 cut(s) 23, 329, 544, 624, 961, 1108, 1142
HincII GTYRAC 2 cut(s) 1098, 1147
HindII GTYRAC 2 cut(s) 1098, 1147
HindIII AAGCTT 2 cut(s) 177, 992
HinfI GANTC 5 cut(s) 127, 544, 1025, 1033, 1226
HpaII CCGG 2 cut(s) 585, 909
HphI GGTGA 6 cut(s) 242, 359, 599, 667, 704, 959
Hpy166II GTNNAC 6 cut(s) 323, 438, 667, 1098, 1147, 1172
Hpy188I TCNGA 1 cut(s) 426
Hpy8I GTNNAC 6 cut(s) 323, 438, 667, 1098, 1147, 1172
HpyAV CCTTC 3 cut(s) 94, 327, 646
HpyCH4III ACNGT 4 cut(s) 230, 525, 692, 1069
HpyCH4IV ACGT 3 cut(s) 299, 669, 813
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 465, 621, 725, 1240
HpyF3I CTNAG 5 cut(s) 153, 191, 475, 837, 1251
HpySE526I ACGT 3 cut(s) 299, 669, 813
Hsp92II CATG 7 cut(s) 23, 329, 544, 624, 961, 1108, 1142
Kzo9I GATC 2 cut(s) 148, 805
LguI GCTCTTC 1 cut(s) 458
LmnI GCTCC 5 cut(s) 251, 587, 685, 733, 1108
Lsp1109I GCAGC 3 cut(s) 10, 103, 898
LweI GCATC 2 cut(s) 482, 543
MaeI CTAG 1 cut(s) 1073
MaeII ACGT 3 cut(s) 299, 669, 813
MalI GATC 2 cut(s) 150, 807
MbiI CCGCTC 2 cut(s) 254, 468
MboI GATC 2 cut(s) 148, 805
MboII GAAGA 9 cut(s) 43, 245, 362, 475, 523, 646, 1217, 1226, 1235
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 5 cut(s) 96, 669, 690, 822, 1252
MlsI TGGCCA 1 cut(s) 18
MluCI AATT 4 cut(s) 167, 699, 738, 829
MluNI TGGCCA 1 cut(s) 18
MlyI GAGTC 2 cut(s) 1019, 1235
Mox20I TGGCCA 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 300
MscI TGGCCA 1 cut(s) 18
MseI TTAA 3 cut(s) 243, 368, 833
MslI CAYNNNNRTG 2 cut(s) 876, 1008
Msp20I TGGCCA 1 cut(s) 18
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 2 cut(s) 585, 909
MspR9I CCNGG 3 cut(s) 909, 927, 1081
MvaI CCWGG 2 cut(s) 927, 1081
MwoI GCNNNNNNNGC 5 cut(s) 15, 465, 621, 725, 1240
NciI CCSGG 1 cut(s) 909
NdeII GATC 2 cut(s) 148, 805
NlaIII CATG 7 cut(s) 23, 329, 544, 624, 961, 1108, 1142
NlaIV GGNNCC 2 cut(s) 583, 854
NspI RCATGY 2 cut(s) 329, 961
PaeI GCATGC 1 cut(s) 961
PciI ACATGT 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 3 cut(s) 127, 544, 1033
PflMI CCANNNNNTGG 1 cut(s) 1028
PfoI TCCNGGA 1 cut(s) 907
PkrI GCNGC 4 cut(s) 11, 25, 118, 888
PleI GAGTC 2 cut(s) 1019, 1234
PmaCI CACGTG 1 cut(s) 670
PmlI CACGTG 1 cut(s) 670
PpsI GAGTC 2 cut(s) 1019, 1234
Ppu21I YACGTR 2 cut(s) 670, 814
PscI ACATGT 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 96
Psp1406I AACGTT 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 925, 1079
PspCI CACGTG 1 cut(s) 670
PspGI CCWGG 2 cut(s) 925, 1079
PspN4I GGNNCC 2 cut(s) 583, 854
PspPI GGNCC 1 cut(s) 775
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 4 cut(s) 268, 439, 502, 1071
RsaNI GTAC 4 cut(s) 267, 438, 501, 1070
RseI CAYNNNNRTG 2 cut(s) 876, 1008
SacI GAGCTC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 458
SaqAI TTAA 3 cut(s) 243, 368, 833
SatI GCNGC 4 cut(s) 10, 24, 117, 887
Sau3AI GATC 2 cut(s) 148, 805
Sau96I GGNCC 1 cut(s) 775
ScaI AGTACT 1 cut(s) 1071
SchI GAGTC 2 cut(s) 1019, 1235
ScrFI CCNGG 3 cut(s) 909, 927, 1081
SduI GDGCHC 5 cut(s) 96, 669, 690, 822, 1252
SfaNI GCATC 2 cut(s) 482, 543
SinI GGWCC 1 cut(s) 775
SmiMI CAYNNNNRTG 2 cut(s) 876, 1008
SmlI CTYRAG 4 cut(s) 95, 242, 642, 770
SmoI CTYRAG 4 cut(s) 95, 242, 642, 770
SnaBI TACGTA 1 cut(s) 814
SphI GCATGC 1 cut(s) 961
Sse9I AATT 4 cut(s) 167, 699, 738, 829
SsiI CCGC 4 cut(s) 9, 254, 313, 468
SspI AATATT 2 cut(s) 50, 430
SspMI CTAG 1 cut(s) 1073
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 3 cut(s) 907, 925, 1079
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 4 cut(s) 230, 525, 692, 1069
TaiI ACGT 3 cut(s) 302, 672, 816
TaqI TCGA 4 cut(s) 461, 527, 708, 935
TasI AATT 4 cut(s) 167, 699, 738, 829
TatI WGTACW 2 cut(s) 437, 1069
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 3 cut(s) 127, 544, 1033
Tru1I TTAA 3 cut(s) 243, 368, 833
Tru9I TTAA 3 cut(s) 243, 368, 833
TscAI CASTG 2 cut(s) 604, 1250
TseI GCWGC 3 cut(s) 23, 116, 886
TspDTI ATGAA 7 cut(s) 198, 524, 738, 970, 1218, 1227, 1236
TspRI CASTG 2 cut(s) 604, 1250
Van91I CCANNNNNTGG 1 cut(s) 1028
Vha464I CTTAAG 1 cut(s) 242
VneI GTGCAC 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 775
XapI RAATTY 1 cut(s) 699
XceI RCATGY 2 cut(s) 329, 961
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 1073
ZrmI AGTACT 1 cut(s) 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.