pycom07g08230

DnaJ central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015685
Physical Location & Seq
Reverse (-)
7605758 .. 7608923
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g08230.5

Sequence Viewer

Length: 1257 bp
ATGTTTGGCGGCTTTGGCCATGCTGCAAGGAAGAGTGATAACACCAAATATTATGGGGTTCTTGGTGTGCCTAAAAGTGCAAGTGCAGACGAGCTCAAGAAGGCATATAAGAAGGCTGCTATCAAGAATCATCCAGACAAAGGTGGAGATCCTGAGAAGTTCAAGGAATTAGGTCAAGCTTATGAAGTTCTCAGTGATCCAGAAAAGAGAGAAATCTATGACGAATACGGTGAAGATGGTCTTAAGGAGGGAGCGGGAAGTGGTAGTACCTCGCATAATCCATTTGATTTATTTGAAACGTTTCTCAATCCCCGCTATCGTTCACATGTAAGAAGGCAGAAGCAAGGTGAAGATGTGGTGCATACCTTAAAGGTTTCTTTGGAGGACTTGTATAATGGCACAACAAAAAAACTCTCTCTTTCTCGGAATATTTTGTGTACAAAATGTAAAGGGAAAGGCTCGAAGAGCGGAAACTCAGGGAGATGTTATGGATGCCATGGTACTGGAATGAAGATTACAACACGGTCAATTGGATTGGGCATGATTCAACAGATGCAACATATCTGCCCTGAATGCCAAGGCTCCGGTGAAGTCATCAGTGAGAGAGATAAATGCCCACCATGCAAAGGTAAGAAGATTACTCAAGAAAAGAAGGTGATGGATGTGCACGTGGAGAAAGGGATGGAGCACGGTCAGAAAATTTTGTTCGAGGGACAGGCTGATGAACCTGATACAATTACTGGAGACATTGTTTTTGTATTGCAACTCAAGGAGCACGCCAAGTTCAAGCGAAAGTTTGATGATCTTTACGTAGAGCACACTCTCAATTTAACTGAGGCTCTTTGTGGATTCCAGTTTGCATTGACCCATCTTGATGGCAGGCAGCTACTTGTCAAATCAAATCCCGGAGAAGTCATCAAGCCTGGTCAATCGAAAGCAATCAATGATGAGGGCATGCCTCATCACCAGAGGCCATTCATAAAGGGCAAGCTTTACATCCACTTCAATGTAGAGTTTCCAGACTCTGGGATTCTTTCTCCTCATCAATCCCAAAAGTTGCAGACAGTACTAGACCCCAGGCATAGCAAGAAGTTGACTGACATGGAGCTGGATAAGTGTGAGGAAACCACCTTGCATGATGTCAACATTGAGGATGAGATGAGGCGCAAACCAAGACAGCAGTATCGGGAGGCATATGATGAAGATGATGAAGATGATGAAGAGTCAATGCCACGGGTGCAGTGTGCTCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

419

Amino Acids

47.19

Weight (kDa)

6.66

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g09580
malus_domestica MD07G1100100.v1.1
prunus_persica Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1
pyrus_communis pycom07g08230
rosa_chinensis RchiOBHm_Chr1g0346511
rosa_laevigata RLG00000028797
rosa_multiflora Rmu_sc0001734.1_g000001
rosa_roxburghii Rroxscaffold_4G00308490
rosa_rugosa Rorug01G0180500 Rorug01G0180600
rosa_samantha Rh1BG166200 Rh1CG184500 Rh1DG197100
rosa_wichuraiana Rw1G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1025
AccBSI CCGCTC 2 cut(s) 254, 468
AciI CCGC 4 cut(s) 9, 254, 313, 468
AclI AACGTT 1 cut(s) 299
AclWI GGATC 2 cut(s) 143, 191
AcoI YGGCCR 1 cut(s) 16
AcsI RAATTY 1 cut(s) 699
AcvI CACGTG 1 cut(s) 670
AfaI GTAC 4 cut(s) 268, 439, 502, 1068
AfiI CCNNNNNNNGG 3 cut(s) 140, 626, 1025
AflII CTTAAG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 5 cut(s) 163, 296, 548, 787, 1006
AjnI CCWGG 2 cut(s) 922, 1076
AluBI AGCT 5 cut(s) 94, 179, 886, 991, 1108
AluI AGCT 5 cut(s) 94, 179, 886, 991, 1108
Alw21I GWGCWC 6 cut(s) 96, 669, 690, 777, 819, 1249
Alw26I GTCTC 1 cut(s) 738
Alw44I GTGCAC 1 cut(s) 665
AlwI GGATC 2 cut(s) 143, 191
AlwNI CAGNNNCTG 1 cut(s) 1025
AoxI GGCC 2 cut(s) 16, 971
ApaLI GTGCAC 1 cut(s) 665
ApeKI GCWGC 3 cut(s) 23, 116, 883
ApoI RAATTY 1 cut(s) 699
ArsI GACNNNNNNTTYG 2 cut(s) 737, 769
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 1167
AsuC2I CCSGG 1 cut(s) 906
AsuHPI GGTGA 5 cut(s) 242, 359, 599, 667, 956
BaeGI GKGCMC 1 cut(s) 669
BaeI ACNNNNGTAYC 2 cut(s) 1166, 1199
BalI TGGCCA 1 cut(s) 18
BanII GRGCYC 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 250, 282
BbrPI CACGTG 1 cut(s) 670
Bbv12I GWGCWC 6 cut(s) 96, 669, 690, 777, 819, 1249
BbvI GCAGC 3 cut(s) 10, 103, 895
BccI CCATC 5 cut(s) 230, 652, 676, 869, 876
BciT130I CCWGG 2 cut(s) 924, 1078
BcnI CCSGG 1 cut(s) 906
BcoDI GTCTC 1 cut(s) 738
BfaI CTAG 1 cut(s) 1070
BfrI CTTAAG 1 cut(s) 242
BisI GCNGC 4 cut(s) 10, 24, 117, 884
BlpI GCTNAGC 1 cut(s) 1248
BlsI GCNGC 4 cut(s) 11, 25, 118, 885
BmcAI AGTACT 1 cut(s) 1068
Bme1390I CCNGG 3 cut(s) 906, 924, 1078
BmiI GGNNCC 1 cut(s) 583
BmrFI CCNGG 3 cut(s) 906, 924, 1078
BmsI GCATC 2 cut(s) 482, 543
BpmI CTGGAG 1 cut(s) 762
Bpu1102I GCTNAGC 1 cut(s) 1248
BpuEI CTTGAG 3 cut(s) 80, 627, 752
BpuMI CCSGG 1 cut(s) 906
BsaAI YACGTR 2 cut(s) 670, 811
BsaJI CCNNGG 4 cut(s) 496, 577, 1076, 1232
BsaWI WCCGGW 1 cut(s) 584
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 735, 765
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 626, 1025
Bse1I ACTGG 3 cut(s) 508, 745, 853
BseBI CCWGG 2 cut(s) 924, 1078
BseDI CCNNGG 4 cut(s) 496, 577, 1076, 1232
BseGI GGATG 6 cut(s) 130, 497, 667, 687, 996, 1159
BseLI CCNNNNNNNGG 3 cut(s) 140, 626, 1025
BseMII CTCAG 4 cut(s) 144, 205, 489, 825
BseNI ACTGG 3 cut(s) 508, 745, 853
BseRI GAGGAG 1 cut(s) 1029
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 3 cut(s) 10, 103, 895
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 2 cut(s) 18, 973
BsiHKAI GWGCWC 6 cut(s) 96, 669, 690, 777, 819, 1249
BsiSI CCGG 2 cut(s) 585, 906
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 3 cut(s) 140, 626, 1025
BsmAI GTCTC 1 cut(s) 738
BsmFI GGGAC 1 cut(s) 726
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 2 cut(s) 18, 973
Bsp1286I GDGCHC 6 cut(s) 96, 669, 690, 777, 819, 1249
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 3 cut(s) 148, 196, 802
Bsp1720I GCTNAGC 1 cut(s) 1248
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 4 cut(s) 9, 254, 313, 468
BspANI GGCC 2 cut(s) 18, 973
BspCNI CTCAG 4 cut(s) 145, 204, 488, 826
BspLI GGNNCC 1 cut(s) 583
BspPI GGATC 2 cut(s) 143, 191
BspQI GCTCTTC 1 cut(s) 458
BspTI CTTAAG 1 cut(s) 242
BsrBI CCGCTC 2 cut(s) 254, 468
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 3 cut(s) 508, 745, 853
BssECI CCNNGG 4 cut(s) 496, 577, 1076, 1232
BssMI GATC 3 cut(s) 148, 196, 802
BssT1I CCWWGG 2 cut(s) 496, 577
Bst2UI CCWGG 2 cut(s) 924, 1078
Bst4CI ACNGT 4 cut(s) 230, 525, 692, 1066
Bst6I CTCTTC 3 cut(s) 26, 458, 1215
BstAFI CTTAAG 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 437
BstBAI YACGTR 2 cut(s) 670, 811
BstC8I GCNNGC 4 cut(s) 777, 881, 956, 989
BstDEI CTNAG 5 cut(s) 153, 191, 475, 834, 1248
BstDSI CCRYGG 2 cut(s) 496, 1232
BstF5I GGATG 6 cut(s) 130, 497, 667, 687, 996, 1159
BstHHI GCGC 1 cut(s) 1167
BstKTI GATC 3 cut(s) 151, 199, 805
BstMAI GTCTC 1 cut(s) 738
BstMBI GATC 3 cut(s) 148, 196, 802
BstMWI GCNNNNNNNGC 5 cut(s) 15, 465, 573, 621, 1237
BstNI CCWGG 2 cut(s) 924, 1078
BstNSI RCATGY 2 cut(s) 329, 958
BstSCI CCNGG 3 cut(s) 904, 922, 1076
BstSLI GKGCMC 1 cut(s) 669
BstSNI TACGTA 1 cut(s) 811
BstV1I GCAGC 3 cut(s) 10, 103, 895
BstX2I RGATCY 1 cut(s) 148
BstXI CCANNNNNNTGG 2 cut(s) 503, 875
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 2 cut(s) 18, 973
BtgI CCRYGG 2 cut(s) 496, 1232
BtsCI GGATG 6 cut(s) 130, 497, 667, 687, 996, 1159
BtsI GCAGTG 1 cut(s) 1247
BtsIMutI CAGTG 3 cut(s) 199, 604, 1247
Cac8I GCNNGC 4 cut(s) 777, 881, 956, 989
CaiI CAGNNNCTG 1 cut(s) 1025
CfoI GCGC 1 cut(s) 1167
Csp6I GTAC 4 cut(s) 267, 438, 501, 1067
CviAII CATG 8 cut(s) 20, 326, 497, 541, 621, 955, 1102, 1136
CviQI GTAC 4 cut(s) 267, 438, 501, 1067
DdeI CTNAG 5 cut(s) 153, 191, 475, 834, 1248
DpnI GATC 3 cut(s) 150, 198, 804
DpnII GATC 3 cut(s) 148, 196, 802
EaeI YGGCCR 1 cut(s) 16
Eam1104I CTCTTC 3 cut(s) 26, 458, 1215
EarI CTCTTC 3 cut(s) 26, 458, 1215
Ecl136II GAGCTC 1 cut(s) 94
Eco105I TACGTA 1 cut(s) 811
Eco130I CCWWGG 2 cut(s) 496, 577
Eco24I GRGCYC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 94
Eco72I CACGTG 1 cut(s) 670
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 922, 1076
EcoT14I CCWWGG 2 cut(s) 496, 577
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 2 cut(s) 496, 577
FaeI CATG 8 cut(s) 23, 329, 500, 544, 624, 958, 1105, 1139
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 1 cut(s) 726
FatI CATG 8 cut(s) 19, 325, 496, 540, 620, 954, 1101, 1135
FauI CCCGC 2 cut(s) 247, 320
FauNDI CATATG 1 cut(s) 1195
Fnu4HI GCNGC 4 cut(s) 10, 24, 117, 884
FokI GGATG 6 cut(s) 117, 504, 674, 694, 983, 1166
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 4 cut(s) 10, 24, 117, 884
FspBI CTAG 1 cut(s) 1070
GlaI GCGC 1 cut(s) 1166
GluI GCNGC 4 cut(s) 10, 24, 117, 884
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 2 cut(s) 18, 973
HapII CCGG 2 cut(s) 585, 906
HhaI GCGC 1 cut(s) 1167
Hin1II CATG 8 cut(s) 23, 329, 500, 544, 624, 958, 1105, 1139
Hin6I GCGC 1 cut(s) 1165
HinP1I GCGC 1 cut(s) 1165
HincII GTYRAC 2 cut(s) 1095, 1144
HindII GTYRAC 2 cut(s) 1095, 1144
HindIII AAGCTT 2 cut(s) 177, 989
HinfI GANTC 6 cut(s) 127, 544, 849, 1022, 1030, 1223
HpaII CCGG 2 cut(s) 585, 906
HphI GGTGA 5 cut(s) 242, 359, 599, 667, 956
Hpy166II GTNNAC 5 cut(s) 323, 438, 667, 1095, 1144
Hpy188I TCNGA 2 cut(s) 426, 696
Hpy188III TCNNGA 9 cut(s) 97, 124, 134, 152, 200, 644, 872, 1019, 1187
Hpy8I GTNNAC 5 cut(s) 323, 438, 667, 1095, 1144
HpyAV CCTTC 4 cut(s) 94, 106, 327, 646
HpyCH4III ACNGT 4 cut(s) 230, 525, 692, 1066
HpyCH4IV ACGT 3 cut(s) 299, 669, 810
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 465, 573, 621, 1237
HpyF3I CTNAG 5 cut(s) 153, 191, 475, 834, 1248
HpySE526I ACGT 3 cut(s) 299, 669, 810
Hsp92II CATG 8 cut(s) 23, 329, 500, 544, 624, 958, 1105, 1139
HspAI GCGC 1 cut(s) 1165
Kzo9I GATC 3 cut(s) 148, 196, 802
LguI GCTCTTC 1 cut(s) 458
LmnI GCTCC 5 cut(s) 251, 587, 685, 772, 1105
Lsp1109I GCAGC 3 cut(s) 10, 103, 895
LweI GCATC 2 cut(s) 482, 543
MaeI CTAG 1 cut(s) 1070
MaeII ACGT 3 cut(s) 299, 669, 810
MalI GATC 3 cut(s) 150, 198, 804
MbiI CCGCTC 2 cut(s) 254, 468
MboI GATC 3 cut(s) 148, 196, 802
MboII GAAGA 9 cut(s) 43, 245, 362, 475, 523, 646, 1214, 1223, 1232
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 6 cut(s) 96, 669, 690, 777, 819, 1249
MlsI TGGCCA 1 cut(s) 18
MluCI AATT 5 cut(s) 167, 528, 699, 735, 826
MluNI TGGCCA 1 cut(s) 18
MlyI GAGTC 2 cut(s) 1016, 1232
Mox20I TGGCCA 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 300
MscI TGGCCA 1 cut(s) 18
MseI TTAA 3 cut(s) 243, 368, 830
MslI CAYNNNNRTG 2 cut(s) 873, 1005
Msp20I TGGCCA 1 cut(s) 18
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 2 cut(s) 585, 906
MspR9I CCNGG 3 cut(s) 906, 924, 1078
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 578
MvaI CCWGG 2 cut(s) 924, 1078
MwoI GCNNNNNNNGC 5 cut(s) 15, 465, 573, 621, 1237
NciI CCSGG 1 cut(s) 906
NcoI CCATGG 1 cut(s) 496
NdeI CATATG 1 cut(s) 1195
NdeII GATC 3 cut(s) 148, 196, 802
NlaIII CATG 8 cut(s) 23, 329, 500, 544, 624, 958, 1105, 1139
NlaIV GGNNCC 1 cut(s) 583
NspI RCATGY 2 cut(s) 329, 958
PaeI GCATGC 1 cut(s) 958
PciI ACATGT 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 458
PctI GAATGC 1 cut(s) 578
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 4 cut(s) 127, 544, 849, 1030
PflMI CCANNNNNTGG 1 cut(s) 1025
PfoI TCCNGGA 1 cut(s) 904
PkrI GCNGC 4 cut(s) 11, 25, 118, 885
PleI GAGTC 2 cut(s) 1016, 1231
PmaCI CACGTG 1 cut(s) 670
PmlI CACGTG 1 cut(s) 670
PpsI GAGTC 2 cut(s) 1016, 1231
Ppu21I YACGTR 2 cut(s) 670, 811
PscI ACATGT 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 96
Psp1406I AACGTT 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 922, 1076
PspCI CACGTG 1 cut(s) 670
PspGI CCWGG 2 cut(s) 922, 1076
PspN4I GGNNCC 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 4 cut(s) 268, 439, 502, 1068
RsaNI GTAC 4 cut(s) 267, 438, 501, 1067
RseI CAYNNNNRTG 2 cut(s) 873, 1005
SacI GAGCTC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 458
SaqAI TTAA 3 cut(s) 243, 368, 830
SatI GCNGC 4 cut(s) 10, 24, 117, 884
Sau3AI GATC 3 cut(s) 148, 196, 802
ScaI AGTACT 1 cut(s) 1068
SchI GAGTC 2 cut(s) 1016, 1232
ScrFI CCNGG 3 cut(s) 906, 924, 1078
SduI GDGCHC 6 cut(s) 96, 669, 690, 777, 819, 1249
SfaNI GCATC 2 cut(s) 482, 543
SmiMI CAYNNNNRTG 2 cut(s) 873, 1005
SmlI CTYRAG 4 cut(s) 95, 242, 642, 767
SmoI CTYRAG 4 cut(s) 95, 242, 642, 767
SnaBI TACGTA 1 cut(s) 811
SphI GCATGC 1 cut(s) 958
Sse9I AATT 5 cut(s) 167, 528, 699, 735, 826
SsiI CCGC 4 cut(s) 9, 254, 313, 468
SspI AATATT 2 cut(s) 50, 430
SspMI CTAG 1 cut(s) 1070
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 3 cut(s) 904, 922, 1076
StyI CCWWGG 2 cut(s) 496, 577
TaaI ACNGT 4 cut(s) 230, 525, 692, 1066
TaiI ACGT 3 cut(s) 302, 672, 813
TaqI TCGA 3 cut(s) 461, 708, 932
TasI AATT 5 cut(s) 167, 528, 699, 735, 826
TatI WGTACW 2 cut(s) 437, 1066
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 4 cut(s) 127, 544, 849, 1030
Tru1I TTAA 3 cut(s) 243, 368, 830
Tru9I TTAA 3 cut(s) 243, 368, 830
TscAI CASTG 3 cut(s) 199, 604, 1247
TseI GCWGC 3 cut(s) 23, 116, 883
TspDTI ATGAA 7 cut(s) 198, 524, 738, 967, 1215, 1224, 1233
TspRI CASTG 3 cut(s) 199, 604, 1247
Van91I CCANNNNNTGG 1 cut(s) 1025
Vha464I CTTAAG 1 cut(s) 242
VneI GTGCAC 1 cut(s) 665
XapI RAATTY 1 cut(s) 699
XceI RCATGY 2 cut(s) 329, 958
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 1070
ZrmI AGTACT 1 cut(s) 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.