Rorug01G0180600

DnaJ central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015685
Physical Location & Seq
Reverse (-)
24775601 .. 24778114
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0180600.1

Sequence Viewer

Length: 723 bp
ATGAAAGTTGTTAAGCATGATGAGAGGAAGAGGAGCAGCCCGGCCCCGACACCATTGGCGGTGGTCGGCGGCGGCTCTGCCCTAACTCCGGCGTCCCTTTTCCGGCCACCTCCGGGGTGGCTTTGTGTGGTCATGGGCGAAGATCCGACCGTTGGATCTTCGTATAAATGCAAAACAGTGATTAGGGAGGCGATTCGTGAGAATCCGTCCGTCGGATTTTCGAAGATCCGACCGTTGGATCTTCGTGATGATTTTTGGAGGGTGATCCTAAGGGCGATCCGTGAGGATCCGACCGTGATTGACGGTCTCCCTTGGGTGAGCGGTTTTGGTGTGTATTGTGTTGAATTGAAGACGCAGCGGGAATATCGAGCTTTGCAAAAAGCTTACCGGGTTTGTATTGTTGCAATCCCGGTACACTATTCAAACGGTGTAGCGGGTAATCCTGCAGGTCAGGAGAATCAGGGCGGTGATCGAGCGGAGTATGCAAGTGGTGTTGAGCCATCAAGACAAGGGGATGTATATAGTTACGGGGTGCTCATGTTGCAATTGTTCACAGGAAGAAGACCTATCGACGAAATGTTTAAAGAGGGTTTGAACCTCAATAACTTTGTCAAGATGGCCATACCAGGAAGAGTGATGCAGATTATAGATCCTACTCTTCTTGCCACTTTAGAAGAGACAACACCTGCAACATCACAAAATGTAGTGAACTACCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

240

Amino Acids

26.55

Weight (kDa)

8.63

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g09580
malus_domestica MD07G1100100.v1.1
prunus_persica Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1
pyrus_communis pycom07g08230
rosa_chinensis RchiOBHm_Chr1g0346511
rosa_laevigata RLG00000028797
rosa_multiflora Rmu_sc0001734.1_g000001
rosa_roxburghii Rroxscaffold_4G00308490
rosa_rugosa Rorug01G0180500 Rorug01G0180600
rosa_samantha Rh1BG166200 Rh1CG184500 Rh1DG197100
rosa_wichuraiana Rw1G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 694
Acc36I ACCTGC 2 cut(s) 437, 694
AccBSI CCGCTC 2 cut(s) 321, 476
AciI CCGC 8 cut(s) 59, 69, 72, 321, 358, 434, 465, 476
AclWI GGATC 9 cut(s) 137, 163, 220, 246, 259, 271, 281, 294, 644
AcoI YGGCCR 2 cut(s) 104, 618
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 6 cut(s) 88, 102, 113, 152, 212, 235
AgsI TTSAA 4 cut(s) 344, 349, 423, 595
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 2 cut(s) 371, 383
AluI AGCT 2 cut(s) 371, 383
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 2 cut(s) 311, 671
AlwI GGATC 9 cut(s) 137, 163, 220, 246, 259, 271, 281, 294, 644
AoxI GGCC 3 cut(s) 42, 104, 618
ApeKI GCWGC 2 cut(s) 36, 355
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 4 cut(s) 41, 114, 389, 410
AsuHPI GGTGA 3 cut(s) 274, 328, 479
AsuII TTCGAA 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 269
BalI TGGCCA 1 cut(s) 620
BamHI GGATCC 1 cut(s) 286
BbsI GAAGAC 2 cut(s) 356, 568
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 48, 367
BccI CCATC 2 cut(s) 508, 610
BciT130I CCWGG 1 cut(s) 627
BcnI CCSGG 4 cut(s) 41, 114, 389, 410
BcoDI GTCTC 2 cut(s) 311, 671
BfaI CTAG 1 cut(s) 721
BfmI CTRYAG 1 cut(s) 444
BfuAI ACCTGC 2 cut(s) 437, 694
BisI GCNGC 4 cut(s) 37, 70, 73, 356
BlsI GCNGC 4 cut(s) 38, 71, 74, 357
Bme1390I CCNGG 5 cut(s) 41, 114, 389, 410, 627
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 45, 288
BmrFI CCNGG 5 cut(s) 41, 114, 389, 410, 627
BmsI GCATC 1 cut(s) 627
BpiI GAAGAC 2 cut(s) 356, 568
Bpu14I TTCGAA 1 cut(s) 221
BpuMI CCSGG 4 cut(s) 41, 114, 389, 410
BsaHI GRCGYC 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 113, 311
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 102, 113, 152, 212, 235
Bse21I CCTNAGG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 2 cut(s) 113, 311
BseGI GGATG 1 cut(s) 520
BseLI CCNNNNNNNGG 6 cut(s) 88, 102, 113, 152, 212, 235
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 48, 367
Bsh1285I CGRYCG 3 cut(s) 150, 233, 294
BshFI GGCC 3 cut(s) 44, 106, 620
BsiEI CGRYCG 3 cut(s) 150, 233, 294
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 6 cut(s) 41, 89, 103, 113, 388, 410
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 6 cut(s) 88, 102, 113, 152, 212, 235
BsmAI GTCTC 2 cut(s) 311, 671
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 3 cut(s) 44, 106, 620
Bso31I GGTCTC 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 9 cut(s) 142, 155, 225, 238, 264, 276, 286, 469, 649
BspACI CCGC 8 cut(s) 59, 69, 72, 321, 358, 434, 465, 476
BspANI GGCC 3 cut(s) 44, 106, 620
BspLI GGNNCC 2 cut(s) 45, 288
BspMAI CTGCAG 1 cut(s) 448
BspMI ACCTGC 2 cut(s) 437, 694
BspPI GGATC 9 cut(s) 137, 163, 220, 246, 259, 271, 281, 294, 644
BspT104I TTCGAA 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 311
BsrBI CCGCTC 2 cut(s) 321, 476
BssECI CCNNGG 2 cut(s) 113, 311
BssMI GATC 9 cut(s) 142, 155, 225, 238, 264, 276, 286, 469, 649
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 6 cut(s) 151, 178, 234, 295, 305, 428
Bst6I CTCTTC 4 cut(s) 23, 625, 663, 669
BstACI GRCGYC 1 cut(s) 92
BstBI TTCGAA 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 520
BstKTI GATC 9 cut(s) 145, 158, 228, 241, 267, 279, 289, 472, 652
BstMAI GTCTC 2 cut(s) 311, 671
BstMBI GATC 9 cut(s) 142, 155, 225, 238, 264, 276, 286, 469, 649
BstMCI CGRYCG 3 cut(s) 150, 233, 294
BstMWI GCNNNNNNNGC 2 cut(s) 482, 541
BstNI CCWGG 1 cut(s) 627
BstSCI CCNGG 5 cut(s) 39, 112, 387, 408, 625
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 48, 367
BstV2I GAAGAC 2 cut(s) 356, 568
BstX2I RGATCY 6 cut(s) 142, 155, 225, 238, 286, 649
BstYI RGATCY 6 cut(s) 142, 155, 225, 238, 286, 649
Bsu36I CCTNAGG 1 cut(s) 269
BsuRI GGCC 3 cut(s) 44, 106, 620
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 2 cut(s) 437, 694
Cfr13I GGNCC 1 cut(s) 43
CseI GACGC 2 cut(s) 81, 361
Csp6I GTAC 1 cut(s) 413
CviAII CATG 3 cut(s) 17, 133, 538
CviJI RGCY 9 cut(s) 39, 44, 75, 106, 121, 371, 383, 499, 620
CviKI_1 RGCY 9 cut(s) 39, 44, 75, 106, 121, 371, 383, 499, 620
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 1 cut(s) 269
DpnI GATC 9 cut(s) 144, 157, 227, 240, 266, 278, 288, 471, 651
DpnII GATC 9 cut(s) 142, 155, 225, 238, 264, 276, 286, 469, 649
DraI TTTAAA 1 cut(s) 583
EaeI YGGCCR 2 cut(s) 104, 618
Eam1104I CTCTTC 4 cut(s) 23, 625, 663, 669
EarI CTCTTC 4 cut(s) 23, 625, 663, 669
Eco130I CCWWGG 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 311
Eco81I CCTNAGG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 3 cut(s) 20, 136, 541
FaiI YATR 9 cut(s) 18, 134, 165, 483, 520, 522, 539, 623, 647
FaqI GGGAC 1 cut(s) 79
FatI CATG 3 cut(s) 16, 132, 537
FauI CCCGC 2 cut(s) 351, 427
Fnu4HI GCNGC 4 cut(s) 37, 70, 73, 356
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 4 cut(s) 37, 70, 73, 356
FspBI CTAG 1 cut(s) 721
GluI GCNGC 4 cut(s) 37, 70, 73, 356
HaeIII GGCC 3 cut(s) 44, 106, 620
HapII CCGG 6 cut(s) 41, 89, 103, 113, 388, 410
HgaI GACGC 2 cut(s) 81, 361
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 3 cut(s) 20, 136, 541
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 3 cut(s) 193, 202, 457
HpaII CCGG 6 cut(s) 41, 89, 103, 113, 388, 410
HphI GGTGA 3 cut(s) 274, 328, 479
Hpy166II GTNNAC 3 cut(s) 415, 552, 709
Hpy188I TCNGA 4 cut(s) 147, 215, 230, 291
Hpy188III TCNNGA 5 cut(s) 197, 245, 452, 504, 613
Hpy8I GTNNAC 3 cut(s) 415, 552, 709
Hpy99I CGWCG 2 cut(s) 215, 575
HpyCH4III ACNGT 6 cut(s) 151, 178, 234, 295, 305, 428
HpyCH4V TGCA 8 cut(s) 171, 376, 404, 446, 485, 544, 640, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 541
HpyF3I CTNAG 1 cut(s) 269
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 3 cut(s) 20, 136, 541
Kzo9I GATC 9 cut(s) 142, 155, 225, 238, 264, 276, 286, 469, 649
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 2 cut(s) 48, 367
LweI GCATC 1 cut(s) 627
MaeI CTAG 1 cut(s) 721
MaeIII GTNAC 1 cut(s) 524
MalI GATC 9 cut(s) 144, 157, 227, 240, 266, 278, 288, 471, 651
MbiI CCGCTC 2 cut(s) 321, 476
MboI GATC 9 cut(s) 142, 155, 225, 238, 264, 276, 286, 469, 649
MfeI CAATTG 1 cut(s) 545
MflI RGATCY 6 cut(s) 142, 155, 225, 238, 286, 649
MhlI GDGCHC 1 cut(s) 537
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 2 cut(s) 344, 545
MluNI TGGCCA 1 cut(s) 620
MmeI TCCRAC 6 cut(s) 133, 170, 193, 216, 253, 314
MnlI CCTC 8 cut(s) 18, 24, 120, 181, 252, 277, 580, 608
Mox20I TGGCCA 1 cut(s) 620
MscI TGGCCA 1 cut(s) 620
MseI TTAA 2 cut(s) 12, 582
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 6 cut(s) 41, 89, 103, 113, 388, 410
MspR9I CCNGG 5 cut(s) 41, 114, 389, 410, 627
MunI CAATTG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 627
MwoI GCNNNNNNNGC 2 cut(s) 482, 541
NciI CCSGG 4 cut(s) 41, 114, 389, 410
NdeII GATC 9 cut(s) 142, 155, 225, 238, 264, 276, 286, 469, 649
NlaIII CATG 3 cut(s) 20, 136, 541
NlaIV GGNNCC 2 cut(s) 45, 288
NspV TTCGAA 1 cut(s) 221
PaqCI CACCTGC 1 cut(s) 694
PfeI GAWTC 3 cut(s) 193, 202, 457
PkrI GCNGC 4 cut(s) 38, 71, 74, 357
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 2 cut(s) 45, 288
PspPI GGNCC 1 cut(s) 43
PsrI GAACNNNNNNTAC 1 cut(s) 701
PstI CTGCAG 1 cut(s) 448
PsuI RGATCY 6 cut(s) 142, 155, 225, 238, 286, 649
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SaqAI TTAA 2 cut(s) 12, 582
SatI GCNGC 4 cut(s) 37, 70, 73, 356
Sau3AI GATC 9 cut(s) 142, 155, 225, 238, 264, 276, 286, 469, 649
Sau96I GGNCC 1 cut(s) 43
SbfI CCTGCAGG 1 cut(s) 448
ScrFI CCNGG 5 cut(s) 41, 114, 389, 410, 627
SdaI CCTGCAGG 1 cut(s) 448
SduI GDGCHC 1 cut(s) 537
SetI ASST 7 cut(s) 112, 373, 385, 451, 568, 600, 688
SfaNI GCATC 1 cut(s) 627
SfcI CTRYAG 1 cut(s) 444
SfuI TTCGAA 1 cut(s) 221
Sse8387I CCTGCAGG 1 cut(s) 448
Sse9I AATT 2 cut(s) 344, 545
SsiI CCGC 8 cut(s) 59, 69, 72, 321, 358, 434, 465, 476
SspMI CTAG 1 cut(s) 721
StyD4I CCNGG 5 cut(s) 39, 112, 387, 408, 625
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 6 cut(s) 151, 178, 234, 295, 305, 428
TaqI TCGA 4 cut(s) 221, 367, 472, 570
TasI AATT 2 cut(s) 344, 545
TauI GCSGC 2 cut(s) 72, 75
TfiI GAWTC 3 cut(s) 193, 202, 457
Tru1I TTAA 2 cut(s) 12, 582
Tru9I TTAA 2 cut(s) 12, 582
TscAI CASTG 1 cut(s) 183
TseI GCWGC 2 cut(s) 36, 355
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 195, 199, 269
TspRI CASTG 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 114
XspI CTAG 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.