Prupe.2G123700_v2.0.a1

DnaJ central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015685
Physical Location & Seq
Reverse (-)
17991824 .. 17999266
7443 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G123700.3

Sequence Viewer

Length: 1248 bp
ATGTTTGGCCATGCTTCAACGAAGAGTGATAGCACCAAGTATTATGGGGTTCTTGGTGTTTCAAAAAATTCAAGTGCAGACGAACTCAAGAAGGCATATAAGAAAGCTGCTATCAAGAATCATCCAGACAAAGGTGGAGATCCTGAGAAGTTCAAGGAATTAGCTCAAGCTTATGAAGTTCTCAGTGATCCAGAAAAGAGGGAAATCTATGACCAATACGGTGAAGATGGTCTTAAAGAGGGAGGAGGAGGTGGTAGTACCTCACATAATCCATTTGATTTATTTGAAGCATTTCTGAATCCCCGCTATCGTTCACATGTAAGGAGGCAGAAGCAAGGTGAAGATGTGGTGCATACCTTAAAGGTTTCTTTGGAGGACTTGTATAATGGCACAACAAAGAAACTCTCTCTCTCTAGGAATATTTTGTGTCTAAAATGTAAAGGGAAAGGCTCAAAGAGCGGAACATCAGGGAGATGTTATGGATGCCAGGGTACTGGAATGAAGATTACAACACGGTCGATTGGATTGGGAATGATTCAACAGATGCAACATGTCTGCCCTGAATGCCAAGGCTCAGGTGAGGTCATCAGTGAGAGAGATAAGTGCCCACCGTGCAAAGGGAACAAGGTTACTCAGGAAAAGAAGGTTATGGATGTGCATGTGGAGAAAGGGATGGAGCATGGCCAGAAAATTGTGTTTGAGGGACAGGCTGATGAAGCTCCAGATACAATTACAGGAGACATTGTTTTCATATTGCAACTCAAGGAGCATGCCAAGTTCAAGCGAAAGCTTGATGATCTTTATGTAGAGCACACTCTCAATTTAACTGAGGCCCTTTGTGGGTTTCAGTTTGTGTTGACCCATCTTGATGGCAGGCAGCTTCTGGTCAAATCAAATCCTGGGGAAGTCATCAAGCCTGGTCAATCAAAAGCAATCAATGACGAGGGCATGCCACATTACCAGAGGCCATTCATGAAGGGCAACCTTTTCATCCATTTCAATGTAGAGTTTCCAGACTCTGGGATTCTTTCTCCTGATCAATCCCGAAATTTACAGACAGTACTATCCCCCAAGCCAAGCAAGCATTTGACTGACGTGGAGCTGGATGAGTGTGAAGAAACCACCATGCATGATGTCAACATTGAGGATGAGATGAGACGTAAACCAAGACAGCAGTATCGGGAGGCATATGATGAAGATGATGACGACGATGAGCCAATGCCACGGGTGCAATGCGCCCAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

416

Amino Acids

46.62

Weight (kDa)

6.13

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g09580
malus_domestica MD07G1100100.v1.1
prunus_persica Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1
pyrus_communis pycom07g08230
rosa_chinensis RchiOBHm_Chr1g0346511
rosa_laevigata RLG00000028797
rosa_multiflora Rmu_sc0001734.1_g000001
rosa_roxburghii Rroxscaffold_4G00308490
rosa_rugosa Rorug01G0180500 Rorug01G0180600
rosa_samantha Rh1BG166200 Rh1CG184500 Rh1DG197100
rosa_wichuraiana Rw1G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1019
AccBSI CCGCTC 1 cut(s) 459
AciI CCGC 2 cut(s) 304, 459
AclWI GGATC 2 cut(s) 134, 182
AcoI YGGCCR 2 cut(s) 7, 682
AcsI RAATTY 2 cut(s) 67, 1048
AfaI GTAC 3 cut(s) 259, 493, 1062
AfiI CCNNNNNNNGG 4 cut(s) 131, 617, 840, 1019
AflIII ACRYGT 2 cut(s) 316, 550
AgsI TTSAA 8 cut(s) 18, 63, 72, 154, 287, 539, 781, 1000
AjiI CACGTC 1 cut(s) 1096
AjnI CCWGG 3 cut(s) 486, 898, 916
AluBI AGCT 7 cut(s) 107, 164, 170, 719, 790, 880, 1102
AluI AGCT 7 cut(s) 107, 164, 170, 719, 790, 880, 1102
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 2 cut(s) 732, 1150
AlwI GGATC 2 cut(s) 134, 182
AlwNI CAGNNNCTG 2 cut(s) 883, 1019
AoxI GGCC 4 cut(s) 7, 682, 831, 965
ApeKI GCWGC 2 cut(s) 107, 877
ApoI RAATTY 2 cut(s) 67, 1048
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 1238
AspS9I GGNCC 1 cut(s) 832
AsuHPI GGTGA 3 cut(s) 233, 350, 590
BaeGI GKGCMC 1 cut(s) 608
BaeI ACNNNNGTAYC 2 cut(s) 1160, 1193
BalI TGGCCA 2 cut(s) 9, 684
Bbv12I GWGCWC 1 cut(s) 813
BbvI GCAGC 2 cut(s) 94, 889
BccI CCATC 4 cut(s) 221, 667, 863, 870
BciT130I CCWGG 3 cut(s) 488, 900, 918
BclI TGATCA 1 cut(s) 1036
BcoDI GTCTC 2 cut(s) 732, 1150
BfaI CTAG 1 cut(s) 414
BisI GCNGC 2 cut(s) 108, 878
BlsI GCNGC 2 cut(s) 109, 879
BmcAI AGTACT 1 cut(s) 1062
Bme1390I CCNGG 3 cut(s) 488, 900, 918
BmgBI CACGTC 1 cut(s) 1096
BmgT120I GGNCC 1 cut(s) 832
BmrFI CCNGG 3 cut(s) 488, 900, 918
BmsI GCATC 2 cut(s) 473, 534
BpmI CTGGAG 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 574
BpuEI CTTGAG 3 cut(s) 71, 150, 746
BsaJI CCNNGG 4 cut(s) 487, 568, 899, 1223
BsaXI ACNNNNNCTCC 4 cut(s) 365, 395, 729, 759
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 617, 840, 1019
Bse1I ACTGG 1 cut(s) 499
Bse3DI GCAATG 1 cut(s) 1238
BseBI CCWGG 3 cut(s) 488, 900, 918
BseDI CCNNGG 4 cut(s) 487, 568, 899, 1223
BseGI GGATG 7 cut(s) 121, 488, 658, 678, 990, 1111, 1153
BseLI CCNNNNNNNGG 4 cut(s) 131, 617, 840, 1019
BseMI GCAATG 1 cut(s) 1238
BseMII CTCAG 5 cut(s) 135, 196, 588, 647, 819
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 2 cut(s) 258, 261
BseSI GKGCMC 1 cut(s) 608
BseXI GCAGC 2 cut(s) 94, 889
BseYI CCCAGC 1 cut(s) 1239
BsgI GTGCAG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 4 cut(s) 9, 684, 833, 967
BsiEI CGRYCG 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 813
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 4 cut(s) 131, 617, 840, 1019
BsmAI GTCTC 2 cut(s) 732, 1150
BsmBI CGTCTC 1 cut(s) 1150
BsmFI GGGAC 1 cut(s) 717
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 4 cut(s) 9, 684, 833, 967
Bsp1286I GDGCHC 2 cut(s) 608, 813
Bsp143I GATC 4 cut(s) 139, 187, 796, 1036
BspACI CCGC 2 cut(s) 304, 459
BspANI GGCC 4 cut(s) 9, 684, 833, 967
BspCNI CTCAG 5 cut(s) 136, 195, 587, 646, 820
BspHI TCATGA 1 cut(s) 972
BspPI GGATC 2 cut(s) 134, 182
BsrBI CCGCTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 1238
BsrI ACTGG 1 cut(s) 499
BssECI CCNNGG 4 cut(s) 487, 568, 899, 1223
BssMI GATC 4 cut(s) 139, 187, 796, 1036
BssT1I CCWWGG 1 cut(s) 568
Bst2UI CCWGG 3 cut(s) 488, 900, 918
Bst4CI ACNGT 4 cut(s) 221, 516, 612, 1060
Bst6I CTCTTC 1 cut(s) 17
BstC8I GCNNGC 4 cut(s) 771, 875, 950, 1082
BstDEI CTNAG 5 cut(s) 144, 182, 574, 633, 828
BstDSI CCRYGG 1 cut(s) 1223
BstF5I GGATG 7 cut(s) 121, 488, 658, 678, 990, 1111, 1153
BstHHI GCGC 1 cut(s) 1238
BstKTI GATC 4 cut(s) 142, 190, 799, 1039
BstMAI GTCTC 2 cut(s) 732, 1150
BstMBI GATC 4 cut(s) 139, 187, 796, 1036
BstMCI CGRYCG 1 cut(s) 518
BstMWI GCNNNNNNNGC 6 cut(s) 456, 564, 612, 716, 1081, 1228
BstNI CCWGG 3 cut(s) 488, 900, 918
BstNSI RCATGY 5 cut(s) 320, 554, 662, 773, 952
BstSCI CCNGG 3 cut(s) 486, 898, 916
BstSLI GKGCMC 1 cut(s) 608
BstV1I GCAGC 2 cut(s) 94, 889
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 2 cut(s) 494, 869
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 4 cut(s) 9, 684, 833, 967
BtgI CCRYGG 1 cut(s) 1223
BtrI CACGTC 1 cut(s) 1096
BtsCI GGATG 7 cut(s) 121, 488, 658, 678, 990, 1111, 1153
BtsIMutI CAGTG 2 cut(s) 190, 595
Cac8I GCNNGC 4 cut(s) 771, 875, 950, 1082
CaiI CAGNNNCTG 2 cut(s) 883, 1019
CciI TCATGA 1 cut(s) 972
CfoI GCGC 1 cut(s) 1238
Cfr13I GGNCC 1 cut(s) 832
Csp6I GTAC 3 cut(s) 258, 492, 1061
CviQI GTAC 3 cut(s) 258, 492, 1061
DdeI CTNAG 5 cut(s) 144, 182, 574, 633, 828
DpnI GATC 4 cut(s) 141, 189, 798, 1038
DpnII GATC 4 cut(s) 139, 187, 796, 1036
EaeI YGGCCR 2 cut(s) 7, 682
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 832
EcoRII CCWGG 3 cut(s) 486, 898, 916
EcoT14I CCWWGG 1 cut(s) 568
EcoT22I ATGCAT 1 cut(s) 1131
ErhI CCWWGG 1 cut(s) 568
Esp3I CGTCTC 1 cut(s) 1150
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 717
FauI CCCGC 1 cut(s) 311
FauNDI CATATG 1 cut(s) 1189
FbaI TGATCA 1 cut(s) 1036
Fnu4HI GCNGC 2 cut(s) 108, 878
FokI GGATG 7 cut(s) 108, 495, 665, 685, 977, 1118, 1160
Fsp4HI GCNGC 2 cut(s) 108, 878
FspBI CTAG 1 cut(s) 414
GlaI GCGC 1 cut(s) 1237
GluI GCNGC 2 cut(s) 108, 878
GsaI CCCAGC 1 cut(s) 1243
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 4 cut(s) 9, 684, 833, 967
HhaI GCGC 1 cut(s) 1238
Hin6I GCGC 1 cut(s) 1236
HinP1I GCGC 1 cut(s) 1236
HincII GTYRAC 2 cut(s) 858, 1138
HindII GTYRAC 2 cut(s) 858, 1138
HindIII AAGCTT 2 cut(s) 168, 788
HinfI GANTC 5 cut(s) 118, 298, 535, 1016, 1024
HphI GGTGA 3 cut(s) 233, 350, 590
Hpy166II GTNNAC 4 cut(s) 314, 858, 1138, 1163
Hpy188I TCNGA 1 cut(s) 297
Hpy8I GTNNAC 4 cut(s) 314, 858, 1138, 1163
Hpy99I CGWCG 1 cut(s) 1211
HpyAV CCTTC 3 cut(s) 85, 637, 970
HpyCH4III ACNGT 4 cut(s) 221, 516, 612, 1060
HpyCH4IV ACGT 2 cut(s) 1095, 1159
HpyCH4V TGCA 8 cut(s) 77, 352, 547, 615, 658, 757, 1129, 1231
HpyF10VI GCNNNNNNNGC 6 cut(s) 456, 564, 612, 716, 1081, 1228
HpyF3I CTNAG 5 cut(s) 144, 182, 574, 633, 828
HpySE526I ACGT 2 cut(s) 1095, 1159
HspAI GCGC 1 cut(s) 1236
Ksp22I TGATCA 1 cut(s) 1036
Kzo9I GATC 4 cut(s) 139, 187, 796, 1036
LmnI GCTCC 4 cut(s) 676, 724, 766, 1099
Lsp1109I GCAGC 2 cut(s) 94, 889
LweI GCATC 2 cut(s) 473, 534
MaeI CTAG 1 cut(s) 414
MaeII ACGT 2 cut(s) 1095, 1159
MaeIII GTNAC 1 cut(s) 628
MalI GATC 4 cut(s) 141, 189, 798, 1038
MbiI CCGCTC 1 cut(s) 459
MboI GATC 4 cut(s) 139, 187, 796, 1036
MboII GAAGA 6 cut(s) 34, 236, 353, 514, 1127, 1208
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 608, 813
MlsI TGGCCA 2 cut(s) 9, 684
MluCI AATT 6 cut(s) 67, 158, 690, 729, 820, 1048
MluNI TGGCCA 2 cut(s) 9, 684
MlyI GAGTC 1 cut(s) 1010
Mox20I TGGCCA 2 cut(s) 9, 684
Mph1103I ATGCAT 1 cut(s) 1131
MroXI GAANNNNTTC 1 cut(s) 291
MscI TGGCCA 2 cut(s) 9, 684
MseI TTAA 3 cut(s) 234, 359, 824
MslI CAYNNNNRTG 2 cut(s) 867, 999
Msp20I TGGCCA 2 cut(s) 9, 684
MspR9I CCNGG 3 cut(s) 488, 900, 918
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 3 cut(s) 488, 900, 918
MwoI GCNNNNNNNGC 6 cut(s) 456, 564, 612, 716, 1081, 1228
NdeI CATATG 1 cut(s) 1189
NdeII GATC 4 cut(s) 139, 187, 796, 1036
NsiI ATGCAT 1 cut(s) 1131
NspI RCATGY 5 cut(s) 320, 554, 662, 773, 952
PaeI GCATGC 2 cut(s) 773, 952
PagI TCATGA 1 cut(s) 972
PciI ACATGT 2 cut(s) 316, 550
PctI GAATGC 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 4 cut(s) 118, 298, 535, 1024
PflMI CCANNNNNTGG 1 cut(s) 1019
PkrI GCNGC 2 cut(s) 109, 879
PleI GAGTC 1 cut(s) 1010
PpsI GAGTC 1 cut(s) 1010
PscI ACATGT 2 cut(s) 316, 550
Psp6I CCWGG 3 cut(s) 486, 898, 916
PspFI CCCAGC 1 cut(s) 1239
PspGI CCWGG 3 cut(s) 486, 898, 916
PspPI GGNCC 1 cut(s) 832
PstNI CAGNNNCTG 2 cut(s) 883, 1019
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 3 cut(s) 259, 493, 1062
RsaNI GTAC 3 cut(s) 258, 492, 1061
RseI CAYNNNNRTG 2 cut(s) 867, 999
SaqAI TTAA 3 cut(s) 234, 359, 824
SatI GCNGC 2 cut(s) 108, 878
Sau3AI GATC 4 cut(s) 139, 187, 796, 1036
Sau96I GGNCC 1 cut(s) 832
ScaI AGTACT 1 cut(s) 1062
SchI GAGTC 1 cut(s) 1010
ScrFI CCNGG 3 cut(s) 488, 900, 918
SduI GDGCHC 2 cut(s) 608, 813
SfaNI GCATC 2 cut(s) 473, 534
SmiMI CAYNNNNRTG 2 cut(s) 867, 999
SmlI CTYRAG 3 cut(s) 86, 165, 761
SmoI CTYRAG 3 cut(s) 86, 165, 761
SphI GCATGC 2 cut(s) 773, 952
Sse9I AATT 6 cut(s) 67, 158, 690, 729, 820, 1048
SsiI CCGC 2 cut(s) 304, 459
SspI AATATT 1 cut(s) 421
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 3 cut(s) 486, 898, 916
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 4 cut(s) 221, 516, 612, 1060
TaiI ACGT 2 cut(s) 1098, 1162
TaqI TCGA 1 cut(s) 518
TasI AATT 6 cut(s) 67, 158, 690, 729, 820, 1048
TatI WGTACW 1 cut(s) 1060
TfiI GAWTC 4 cut(s) 118, 298, 535, 1024
Tru1I TTAA 3 cut(s) 234, 359, 824
Tru9I TTAA 3 cut(s) 234, 359, 824
TscAI CASTG 2 cut(s) 190, 595
TseI GCWGC 2 cut(s) 107, 877
TspDTI ATGAA 8 cut(s) 189, 515, 729, 739, 961, 979, 989, 1209
TspRI CASTG 2 cut(s) 190, 595
Van91I CCANNNNNTGG 1 cut(s) 1019
XapI RAATTY 2 cut(s) 67, 1048
XceI RCATGY 5 cut(s) 320, 554, 662, 773, 952
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 414
ZrmI AGTACT 1 cut(s) 1062
Zsp2I ATGCAT 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.