Rh1CG184500

DnaJ central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015685
Physical Location & Seq
Reverse (-)
40471315 .. 40476714
5400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG184500.1

Sequence Viewer

Length: 1263 bp
ATGTTTCGCCATGCTTCGAGGAACAGTGATAACACCAAGTATTATGAGGTCCTTGGTGTCCCCAAAACTGCAAGTCAAGACGAGCTGAAGAAGGCATATAAGAAAGCTGCTATCAAGAATCATCCTGACAAAGGTGGAGATCCTGAAAAGTTCAAGGAGTTAGGTCAAGCTTATGAAGTTCTTAATGATCCGGAAAAGAGAGAAGTCTATGACCAATATGGTGAAGATGGTCTTAAAGACGGACCAGGACGTGGTGGTCCCTCACATAATCCATTTGATATATTTGAAACGTTTTTGAATCCACGTTATCGTTCACATGTAAGAAGGCAGAAACAAGGTGAAGATGTGGTCCATACCTTAAAGGTTTCTTTGGAGGACTTGTACAATGGCACAACAAAGAAACTCTCTCTCTCTAGGAATATTTTGTGTCCCAAATGTAAAGGGAAAGGCTCAAAGAGCGGAGCAACAGGGAGATGTTACGGATGCCGTGGTACTGGAATGAAGGTTACAACACGGTCAATTGGATTGGGCATGTTTCAACAGATGCAACATCTCTGCCCTGACTGCCGTGGCTCTGGTGAGGTAATCAGTGATAGAGATAAATGCCCACCATGCAAAGGAAACAAGATTAGTCACGAAAAGAAGGTGCTGGATGTGCACATAGAGAAAGGAATGGAGCATGGACAGAAAATTGTCTTTGAGGGACAGGCTGATGAAGCTCCTGATACAATTACCGGGGATATTGTTATCATAGTGCAACTCAAGGAGCACACCAAGTTCAAGCGGAAGTTTGATGATCTTTACATAGAACACACTCTCAGTTTAACTGAGGCTCTGTGTGGGTTTCAGTTTGTGTTGACTCATCTTGATGGCAGGCCGCTTCTGGTCAAATCAAATCCTGGAGAAGTCATGAAGCCTGGTCAATCCAAAGCAATCAATGATGAGGGCATGCCGCATCACAAAAGGCCATTCATAAAGGGCATGCTTTTCATCCATTTCAACGTAGAATTTCCAGATTCTGGGATTCTTTCCCCTGATCAATGCCGAAATATAGCGACAATACTAACACCCAAGCCAAGCAAGAAGCATTTGACTGACATGGAGCTTGATGAGTGTGAGGAAACCACTATGCATGATGTCAATATTGAGGATGAGATGAGGCGCAAGTCAAAACAACAGTACCGGGAGGCATATGATGATGATGATGATGATGAAGAAGATGATGATGACCCCATGCCACGGGTGCAGTGTGCCCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

420

Amino Acids

47.58

Weight (kDa)

6.3

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 13 - 71 1.1e-22 DnaJ domain
DnaJ_C PF01556 117 - 338 1e-36 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 143 - 209 5.5e-15 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g09580
malus_domestica MD07G1100100.v1.1
prunus_persica Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1
pyrus_communis pycom07g08230
rosa_chinensis RchiOBHm_Chr1g0346511
rosa_laevigata RLG00000028797
rosa_multiflora Rmu_sc0001734.1_g000001
rosa_roxburghii Rroxscaffold_4G00308490
rosa_rugosa Rorug01G0180500 Rorug01G0180600
rosa_samantha Rh1BG166200 Rh1CG184500 Rh1DG197100
rosa_wichuraiana Rw1G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 255
AccB7I CCANNNNNTGG 2 cut(s) 251, 1019
AccBSI CCGCTC 1 cut(s) 459
AccIII TCCGGA 1 cut(s) 190
AciI CCGC 4 cut(s) 459, 784, 878, 953
AclI AACGTT 1 cut(s) 290
AclWI GGATC 2 cut(s) 134, 182
AcsI RAATTY 1 cut(s) 1007
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 3 cut(s) 383, 493, 1181
AfiI CCNNNNNNNGG 5 cut(s) 131, 251, 617, 1019, 1239
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 6 cut(s) 154, 287, 298, 539, 781, 1000
AjiI CACGTC 1 cut(s) 251
AjnI CCWGG 3 cut(s) 244, 898, 916
AluBI AGCT 5 cut(s) 85, 107, 170, 719, 1105
AluI AGCT 5 cut(s) 85, 107, 170, 719, 1105
Alw21I GWGCWC 2 cut(s) 660, 771
Alw44I GTGCAC 1 cut(s) 656
AlwI GGATC 2 cut(s) 134, 182
AlwNI CAGNNNCTG 1 cut(s) 1019
Aor13HI TCCGGA 1 cut(s) 190
AoxI GGCC 2 cut(s) 875, 965
ApaLI GTGCAC 1 cut(s) 656
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 1007
AspLEI GCGC 1 cut(s) 1164
AspS9I GGNCC 4 cut(s) 49, 242, 257, 349
AsuC2I CCSGG 2 cut(s) 736, 1184
AsuHPI GGTGA 3 cut(s) 233, 350, 590
AvaII GGWCC 4 cut(s) 49, 242, 257, 349
BaeGI GKGCMC 2 cut(s) 660, 1255
BaeI ACNNNNGTAYC 2 cut(s) 1163, 1196
Bbv12I GWGCWC 2 cut(s) 660, 771
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 221, 863
BceAI ACGGC 2 cut(s) 471, 552
BciT130I CCWGG 3 cut(s) 246, 900, 918
BclI TGATCA 1 cut(s) 1036
BcnI CCSGG 2 cut(s) 736, 1184
BfaI CTAG 1 cut(s) 414
BisI GCNGC 3 cut(s) 108, 878, 953
BlsI GCNGC 3 cut(s) 109, 879, 954
Bme1390I CCNGG 5 cut(s) 246, 736, 900, 918, 1184
Bme18I GGWCC 4 cut(s) 49, 242, 257, 349
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 4 cut(s) 49, 242, 257, 349
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 5 cut(s) 246, 736, 900, 918, 1184
BmsI GCATC 3 cut(s) 473, 534, 964
BpmI CTGGAG 1 cut(s) 921
BpuEI CTTGAG 1 cut(s) 746
BpuMI CCSGG 2 cut(s) 736, 1184
BsaJI CCNNGG 5 cut(s) 52, 487, 568, 735, 1238
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 251, 617, 1019, 1239
Bse1I ACTGG 1 cut(s) 499
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 3 cut(s) 246, 900, 918
BseDI CCNNGG 5 cut(s) 52, 487, 568, 735, 1238
BseGI GGATG 5 cut(s) 121, 488, 658, 990, 1156
BseLI CCNNNNNNNGG 5 cut(s) 131, 251, 617, 1019, 1239
BseMII CTCAG 2 cut(s) 819, 832
BseNI ACTGG 1 cut(s) 499
BseSI GKGCMC 2 cut(s) 660, 1255
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 1254
BshFI GGCC 2 cut(s) 877, 967
BsiHKAI GWGCWC 2 cut(s) 660, 771
BsiSI CCGG 3 cut(s) 191, 735, 1183
BslFI GGGAC 4 cut(s) 44, 243, 414, 717
BslI CCNNNNNNNGG 5 cut(s) 131, 251, 617, 1019, 1239
BsmFI GGGAC 4 cut(s) 44, 243, 414, 717
BsnI GGCC 2 cut(s) 877, 967
Bsp1286I GDGCHC 3 cut(s) 660, 771, 1255
Bsp13I TCCGGA 1 cut(s) 190
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 4 cut(s) 139, 187, 796, 1036
BspACI CCGC 4 cut(s) 459, 784, 878, 953
BspANI GGCC 2 cut(s) 877, 967
BspCNI CTCAG 2 cut(s) 820, 831
BspEI TCCGGA 1 cut(s) 190
BspHI TCATGA 1 cut(s) 909
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 2 cut(s) 134, 182
BsrBI CCGCTC 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 381
BsrI ACTGG 1 cut(s) 499
BssECI CCNNGG 5 cut(s) 52, 487, 568, 735, 1238
BssMI GATC 4 cut(s) 139, 187, 796, 1036
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 3 cut(s) 246, 900, 918
Bst4CI ACNGT 3 cut(s) 26, 516, 1179
BstAUI TGTACA 1 cut(s) 381
BstC8I GCNNGC 3 cut(s) 875, 950, 983
BstDEI CTNAG 2 cut(s) 818, 828
BstDSI CCRYGG 3 cut(s) 487, 568, 1238
BstENI CCTNNNNNAGG 1 cut(s) 129
BstF5I GGATG 5 cut(s) 121, 488, 658, 990, 1156
BstHHI GCGC 1 cut(s) 1164
BstKTI GATC 4 cut(s) 142, 190, 799, 1039
BstMBI GATC 4 cut(s) 139, 187, 796, 1036
BstMWI GCNNNNNNNGC 6 cut(s) 456, 564, 612, 655, 716, 1243
BstNI CCWGG 3 cut(s) 246, 900, 918
BstNSI RCATGY 4 cut(s) 320, 535, 952, 985
BstSCI CCNGG 5 cut(s) 244, 734, 898, 916, 1182
BstSLI GKGCMC 2 cut(s) 660, 1255
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 2 cut(s) 877, 967
BtgI CCRYGG 3 cut(s) 487, 568, 1238
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 5 cut(s) 121, 488, 658, 990, 1156
BtsI GCAGTG 1 cut(s) 1253
BtsIMutI CAGTG 3 cut(s) 31, 595, 1253
Cac8I GCNNGC 3 cut(s) 875, 950, 983
CaiI CAGNNNCTG 1 cut(s) 1019
CciI TCATGA 1 cut(s) 909
CfoI GCGC 1 cut(s) 1164
Cfr13I GGNCC 4 cut(s) 49, 242, 257, 349
Csp6I GTAC 3 cut(s) 382, 492, 1180
CviQI GTAC 3 cut(s) 382, 492, 1180
DdeI CTNAG 2 cut(s) 818, 828
DpnI GATC 4 cut(s) 141, 189, 798, 1038
DpnII GATC 4 cut(s) 139, 187, 796, 1036
DrdI GACNNNNNNGTC 1 cut(s) 255
DseDI GACNNNNNNGTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 4 cut(s) 49, 242, 257, 349
Eco57I CTGAAG 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 3 cut(s) 244, 898, 916
EcoT14I CCWWGG 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 1134
ErhI CCWWGG 1 cut(s) 52
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 4 cut(s) 44, 243, 414, 717
FauNDI CATATG 1 cut(s) 1192
FbaI TGATCA 1 cut(s) 1036
Fnu4HI GCNGC 3 cut(s) 108, 878, 953
FokI GGATG 5 cut(s) 108, 495, 665, 977, 1163
Fsp4HI GCNGC 3 cut(s) 108, 878, 953
FspBI CTAG 1 cut(s) 414
GlaI GCGC 1 cut(s) 1163
GluI GCNGC 3 cut(s) 108, 878, 953
GsaI CCCAGC 1 cut(s) 1258
GsuI CTGGAG 1 cut(s) 921
HaeIII GGCC 2 cut(s) 877, 967
HapII CCGG 3 cut(s) 191, 735, 1183
HhaI GCGC 1 cut(s) 1164
Hin6I GCGC 1 cut(s) 1162
HinP1I GCGC 1 cut(s) 1162
HincII GTYRAC 1 cut(s) 858
HindII GTYRAC 1 cut(s) 858
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 5 cut(s) 118, 298, 859, 1016, 1024
HpaII CCGG 3 cut(s) 191, 735, 1183
HphI GGTGA 3 cut(s) 233, 350, 590
Hpy166II GTNNAC 3 cut(s) 314, 658, 858
Hpy8I GTNNAC 3 cut(s) 314, 658, 858
HpyAV CCTTC 4 cut(s) 85, 318, 496, 637
HpyCH4III ACNGT 3 cut(s) 26, 516, 1179
HpyCH4IV ACGT 4 cut(s) 250, 290, 304, 1002
HpyCH4V TGCA 7 cut(s) 71, 547, 615, 658, 757, 1132, 1246
HpyF10VI GCNNNNNNNGC 6 cut(s) 456, 564, 612, 655, 716, 1243
HpyF3I CTNAG 2 cut(s) 818, 828
HpySE526I ACGT 4 cut(s) 250, 290, 304, 1002
HspAI GCGC 1 cut(s) 1162
Kpn2I TCCGGA 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 1036
Kzo9I GATC 4 cut(s) 139, 187, 796, 1036
LmnI GCTCC 5 cut(s) 461, 676, 724, 766, 1102
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 473, 534, 964
MaeI CTAG 1 cut(s) 414
MaeII ACGT 4 cut(s) 250, 290, 304, 1002
MaeIII GTNAC 3 cut(s) 476, 505, 632
MalI GATC 4 cut(s) 141, 189, 798, 1038
MbiI CCGCTC 1 cut(s) 459
MboI GATC 4 cut(s) 139, 187, 796, 1036
MboII GAAGA 5 cut(s) 100, 236, 353, 1226, 1229
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 3 cut(s) 660, 771, 1255
MluCI AATT 4 cut(s) 519, 690, 729, 1007
MlyI GAGTC 1 cut(s) 853
Mph1103I ATGCAT 1 cut(s) 1134
MroI TCCGGA 1 cut(s) 190
MseI TTAA 4 cut(s) 183, 234, 359, 824
MslI CAYNNNNRTG 1 cut(s) 867
MspI CCGG 3 cut(s) 191, 735, 1183
MspR9I CCNGG 5 cut(s) 246, 736, 900, 918, 1184
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 3 cut(s) 246, 900, 918
MwoI GCNNNNNNNGC 6 cut(s) 456, 564, 612, 655, 716, 1243
NciI CCSGG 2 cut(s) 736, 1184
NdeI CATATG 1 cut(s) 1192
NdeII GATC 4 cut(s) 139, 187, 796, 1036
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 632
NsiI ATGCAT 1 cut(s) 1134
NspI RCATGY 4 cut(s) 320, 535, 952, 985
PaeI GCATGC 2 cut(s) 952, 985
PagI TCATGA 1 cut(s) 909
PciI ACATGT 1 cut(s) 316
PfeI GAWTC 4 cut(s) 118, 298, 1016, 1024
PflMI CCANNNNNTGG 2 cut(s) 251, 1019
PfoI TCCNGGA 1 cut(s) 898
PkrI GCNGC 3 cut(s) 109, 879, 954
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
PpuMI RGGWCCY 1 cut(s) 49
PscI ACATGT 1 cut(s) 316
Psp1406I AACGTT 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 3 cut(s) 244, 898, 916
PspFI CCCAGC 1 cut(s) 1254
PspGI CCWGG 3 cut(s) 244, 898, 916
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 4 cut(s) 49, 242, 257, 349
PspPPI RGGWCCY 1 cut(s) 49
PstNI CAGNNNCTG 1 cut(s) 1019
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 3 cut(s) 383, 493, 1181
RsaNI GTAC 3 cut(s) 382, 492, 1180
RseI CAYNNNNRTG 1 cut(s) 867
SaqAI TTAA 4 cut(s) 183, 234, 359, 824
SatI GCNGC 3 cut(s) 108, 878, 953
Sau3AI GATC 4 cut(s) 139, 187, 796, 1036
Sau96I GGNCC 4 cut(s) 49, 242, 257, 349
SchI GAGTC 1 cut(s) 853
ScrFI CCNGG 5 cut(s) 246, 736, 900, 918, 1184
SduI GDGCHC 3 cut(s) 660, 771, 1255
SfaNI GCATC 3 cut(s) 473, 534, 964
SinI GGWCC 4 cut(s) 49, 242, 257, 349
SmiMI CAYNNNNRTG 1 cut(s) 867
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
SphI GCATGC 2 cut(s) 952, 985
Sse9I AATT 4 cut(s) 519, 690, 729, 1007
SsiI CCGC 4 cut(s) 459, 784, 878, 953
SspI AATATT 2 cut(s) 421, 1144
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 5 cut(s) 244, 734, 898, 916, 1182
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 3 cut(s) 26, 516, 1179
TaiI ACGT 4 cut(s) 253, 293, 307, 1005
TaqI TCGA 1 cut(s) 17
TasI AATT 4 cut(s) 519, 690, 729, 1007
TatI WGTACW 1 cut(s) 381
TauI GCSGC 2 cut(s) 880, 955
TfiI GAWTC 4 cut(s) 118, 298, 1016, 1024
Tru1I TTAA 4 cut(s) 183, 234, 359, 824
Tru9I TTAA 4 cut(s) 183, 234, 359, 824
TscAI CASTG 3 cut(s) 31, 595, 1253
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 632
TspDTI ATGAA 7 cut(s) 189, 515, 729, 926, 961, 979, 1227
TspGWI ACGGA 2 cut(s) 255, 495
TspRI CASTG 3 cut(s) 31, 595, 1253
Van91I CCANNNNNTGG 2 cut(s) 251, 1019
VneI GTGCAC 1 cut(s) 656
VpaK11BI GGWCC 4 cut(s) 49, 242, 257, 349
XagI CCTNNNNNAGG 1 cut(s) 129
XapI RAATTY 1 cut(s) 1007
XceI RCATGY 4 cut(s) 320, 535, 952, 985
XspI CTAG 1 cut(s) 414
Zsp2I ATGCAT 1 cut(s) 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.