Rorug01G0180500

DnaJ central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015685
Physical Location & Seq
Reverse (-)
24769198 .. 24769784
587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0180500.1

Sequence Viewer

Length: 378 bp
ATGGAGGTCGAGTTTGGGAGGAGATCTAGTTTGGGAGGAGTTCAGAATGAAGGAGGTCGAGGGAGAGTTCCCGCAAATTTTCGAACTAAACTTTTAACACCGGTCATTTTAAGAACTGGTGTTAATGACATACATTTAAATCGATTTCTAGTAGTGTACATCAATGGTTACAATAATGAAATCGAAGCAGTTGAAGAAGACATTGACAATGAGAATTTAAGCAAGATGAGCACTTATGTGTGGAAGTGCATACTTCTAACCCTTAAGATTGGACTTGCATGCTCGGAAGAATCACCAAGGAATAGAATGTCTATGGAAGAGGTCCACAGGAAGCTACACCATATAAAAGATGCTTACTCTGATGTTGACATCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

125

Amino Acids

14.34

Weight (kDa)

6.08

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g09580
malus_domestica MD07G1100100.v1.1
prunus_persica Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1 Prupe.2G123700_v2.0.a1
pyrus_communis pycom07g08230
rosa_chinensis RchiOBHm_Chr1g0346511
rosa_laevigata RLG00000028797
rosa_multiflora Rmu_sc0001734.1_g000001
rosa_roxburghii Rroxscaffold_4G00308490
rosa_rugosa Rorug01G0180500 Rorug01G0180600
rosa_samantha Rh1BG166200 Rh1CG184500 Rh1DG197100
rosa_wichuraiana Rw1G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 72
AcsI RAATTY 2 cut(s) 76, 214
AfaI GTAC 1 cut(s) 158
AflII CTTAAG 1 cut(s) 263
AgeI ACCGGT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 194
AleI CACNNNNGTG 1 cut(s) 236
AluBI AGCT 1 cut(s) 334
AluI AGCT 1 cut(s) 334
Alw21I GWGCWC 1 cut(s) 233
ApoI RAATTY 2 cut(s) 76, 214
AsiGI ACCGGT 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 285
AsuII TTCGAA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 233
BfaI CTAG 2 cut(s) 27, 149
BfrI CTTAAG 1 cut(s) 263
BglII AGATCT 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 204
Bpu14I TTCGAA 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 3 cut(s) 13, 26, 43
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 2 cut(s) 34, 51
BshTI ACCGGT 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 1 cut(s) 23
BspACI CCGC 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 142
BspT104I TTCGAA 1 cut(s) 82
BspTI CTTAAG 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 312
BstAFI CTTAAG 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 280
BstKTI GATC 1 cut(s) 26
BstMBI GATC 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 282
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
Bsu15I ATCGAT 1 cut(s) 142
BsuTUI ATCGAT 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 322
ClaI ATCGAT 1 cut(s) 142
Csp6I GTAC 1 cut(s) 157
CspAI ACCGGT 1 cut(s) 100
CviAII CATG 1 cut(s) 279
CviJI RGCY 1 cut(s) 334
CviKI_1 RGCY 1 cut(s) 334
CviQI GTAC 1 cut(s) 157
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
DraI TTTAAA 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 1 cut(s) 282
FaiI YATR 7 cut(s) 131, 237, 251, 280, 314, 342, 344
FatI CATG 1 cut(s) 278
FauI CCCGC 1 cut(s) 79
FspBI CTAG 2 cut(s) 27, 149
HapII CCGG 1 cut(s) 101
Hin1II CATG 1 cut(s) 282
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 285
Hpy166II GTNNAC 3 cut(s) 157, 325, 367
Hpy188I TCNGA 3 cut(s) 45, 286, 361
Hpy8I GTNNAC 3 cut(s) 157, 325, 367
HpyAV CCTTC 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 249, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
Hsp92II CATG 1 cut(s) 282
Kzo9I GATC 1 cut(s) 23
LpnPI CCDG 3 cut(s) 102, 114, 313
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 27, 149
MaeIII GTNAC 1 cut(s) 167
MalI GATC 1 cut(s) 25
MboI GATC 1 cut(s) 23
MboII GAAGA 4 cut(s) 206, 209, 299, 329
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 2 cut(s) 76, 214
MnlI CCTC 5 cut(s) 12, 29, 47, 53, 313
MseI TTAA 7 cut(s) 95, 110, 123, 137, 218, 264, 376
MslI CAYNNNNRTG 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 228
NdeII GATC 1 cut(s) 23
NlaIII CATG 1 cut(s) 282
NspI RCATGY 1 cut(s) 282
NspV TTCGAA 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 236
PaeI GCATGC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 290
PinAI ACCGGT 1 cut(s) 100
PspPI GGNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 23
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 7 cut(s) 95, 110, 123, 137, 218, 264, 376
Sau3AI GATC 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 322
SduI GDGCHC 1 cut(s) 233
SetI ASST 4 cut(s) 9, 58, 324, 336
SfaNI GCATC 1 cut(s) 340
SfuI TTCGAA 1 cut(s) 82
SinI GGWCC 1 cut(s) 322
SmiI ATTTAAAT 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SphI GCATGC 1 cut(s) 282
Sse9I AATT 2 cut(s) 76, 214
SsiI CCGC 1 cut(s) 72
SspMI CTAG 2 cut(s) 27, 149
StyI CCWWGG 1 cut(s) 296
SwaI ATTTAAAT 1 cut(s) 138
TaqI TCGA 5 cut(s) 9, 58, 82, 142, 183
TasI AATT 2 cut(s) 76, 214
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 7 cut(s) 95, 110, 123, 137, 218, 264, 376
Tru9I TTAA 7 cut(s) 95, 110, 123, 137, 218, 264, 376
TspDTI ATGAA 2 cut(s) 63, 192
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 2 cut(s) 76, 214
XceI RCATGY 1 cut(s) 282
XspI CTAG 2 cut(s) 27, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.