Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016387

Physical Location & Seq

Genomic Coordinates Forward (+)

15888489 .. 15889098

Gene Structure 610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1123300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGTTGTATCAGAATTTTCTTGGAATCAACCATCCAGAGGATGACAAGTGGATGCAAGAAAAGAAAGCCACCAAAACTTTCTTCCATCTTTGATGCGCCAGCAGCTGCAACCTCATCTTTTGCAGCCATGGAAGTCTCCAACCAGTTCAAGCAAGTGTTTAAAGTCATGGATGCAAACGGGGACGGGAAAATCTCCCCTCTCGAGCTGAGCGACATGCTCTCGTGCCTCGGATACAAGAAGTCGATCGCCACAATGGAAGCTGAAGGGATTTCGAGGGAAATGGATTTTAATGGAGACGGATTCTTAGACTTGGATGAATTCATTACTGCAGTGAAGTGTGAACTCATGGATGCTTTTCGTATTTTCGACGCGGATAAGAACAGGAAAATTTCAGCCGAGGAGTTGCAGAAGGTTTTGGTGAGCCTTGGATGCCAAAAATGTAGTCTGAAAGAGTGTAGGAAGATGATTAAAGGGGTTGATAGGAAGGGAGATGGAGCTGTGGATTTTGAAGAATTTAGGTTGATGATGACAAAAAATTATGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

184

Amino Acids

20.44

Weight (kDa)

7.48

Isoelectric Point (pI)

24.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	49 - 112	8.5e-13	EF-hand domain pair
EF-hand_6	PF13405	49 - 78	2.6e-06	EF-hand domain
EF-hand_1	PF00036	50 - 75	5.8e-06	EF hand domain
EF-hand_5	PF13202	50 - 73	4.5e-07	EF hand
EF-hand_7	PF13499	114 - 177	2.7e-11	EF-hand domain pair
EF-hand_1	PF00036	115 - 142	4.6e-06	EF hand domain
EF-hand_6	PF13405	115 - 144	3e-07	EF-hand domain
EF-hand_8	PF13833	128 - 179	9.2e-11	EF-hand domain pair
EF-hand_1	PF00036	152 - 179	1.7e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016387)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12030
malus_domestica	MD02G1202000.v1.1 MD07G1123300.v1.1
prunus_persica	Prupe.2G146900_v2.0.a1
pyrus_communis	pycom07g11200
rosa_chinensis	RchiOBHm_Chr1g0350741
rosa_laevigata	RLG00000028458
rosa_multiflora	Rmu_sc0007810.1_g000002
rosa_roxburghii	Rroxscaffold_4G00304540
rosa_rugosa	Rorug01G0213700
rosa_samantha	Rh1AG227900 Rh1BG197400 Rh1CG212800 Rh1DG225300
rosa_wichuraiana	Rw1G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	374
AciI	CCGC	1 cut(s)	374
AcsI	RAATTY	4 cut(s)	15, 320, 390, 515
AcuI	CTGAAG	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	151, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	4 cut(s)	107, 208, 263, 500
AluI	AGCT	4 cut(s)	107, 208, 263, 500
Alw26I	GTCTC	2 cut(s)	142, 291
AlwNI	CAGNNNCTG	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	203
ApeKI	GCWGC	3 cut(s)	104, 107, 125
ApoI	RAATTY	4 cut(s)	15, 320, 390, 515
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	203
BauI	CACGAG	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	94, 116, 137
BccI	CCATC	3 cut(s)	41, 95, 488
BciVI	GTATCC	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	142, 291
BfmI	CTRYAG	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	3 cut(s)	105, 108, 126
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	3 cut(s)	106, 109, 127
BmeT110I	CYCGRG	1 cut(s)	203
BmsI	GCATC	5 cut(s)	44, 85, 163, 343, 422
Bpu1102I	GCTNAGC	1 cut(s)	209
BsaJI	CCNNGG	4 cut(s)	129, 229, 399, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	4 cut(s)	129, 229, 399, 427
BseGI	GGATG	7 cut(s)	33, 48, 59, 178, 322, 358, 437
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	3 cut(s)	94, 116, 137
Bsh1236I	CGCG	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	2 cut(s)	142, 291
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	246
Bsp1720I	GCTNAGC	1 cut(s)	209
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	1 cut(s)	374
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	374
BspMAI	CTGCAG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	4 cut(s)	129, 229, 399, 427
BssMI	GATC	1 cut(s)	246
BssSI	CACGAG	1 cut(s)	223
BssT1I	CCWWGG	2 cut(s)	129, 427
Bst2BI	CACGAG	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	209, 307
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	7 cut(s)	33, 48, 59, 178, 322, 358, 437
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	2 cut(s)	142, 291
BstMBI	GATC	1 cut(s)	246
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 432
BstNSI	RCATGY	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	3 cut(s)	94, 116, 137
BsuI	GTATCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	7 cut(s)	33, 48, 59, 178, 322, 358, 437
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	100
CseI	GACGC	1 cut(s)	380
CviAII	CATG	4 cut(s)	130, 169, 217, 349
CviJI	RGCY	8 cut(s)	70, 107, 128, 208, 263, 398, 426, 500
CviKI_1	RGCY	8 cut(s)	70, 107, 128, 208, 263, 398, 426, 500
DdeI	CTNAG	2 cut(s)	209, 307
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DraI	TTTAAA	1 cut(s)	163
Eco130I	CCWWGG	2 cut(s)	129, 427
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	129, 427
ErhI	CCWWGG	2 cut(s)	129, 427
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	4 cut(s)	133, 172, 220, 352
FaiI	YATR	5 cut(s)	131, 170, 218, 350, 543
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	4 cut(s)	129, 168, 216, 348
Fnu4HI	GCNGC	3 cut(s)	105, 108, 126
FokI	GGATG	7 cut(s)	20, 55, 66, 185, 329, 365, 444
Fsp4HI	GCNGC	3 cut(s)	105, 108, 126
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	105, 108, 126
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	133, 172, 220, 352
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	2 cut(s)	26, 303
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	3 cut(s)	14, 233, 450
Hpy188III	TCNNGA	2 cut(s)	37, 203
Hpy8I	GTNNAC	1 cut(s)	344
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	3 cut(s)	260, 406, 481
HpyCH4V	TGCA	6 cut(s)	57, 110, 125, 176, 332, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 432
HpyF3I	CTNAG	2 cut(s)	209, 307
Hsp92II	CATG	4 cut(s)	133, 172, 220, 352
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	497
LpnPI	CCDG	4 cut(s)	50, 114, 158, 370
Lsp1109I	GCAGC	3 cut(s)	94, 116, 137
LweI	GCATC	5 cut(s)	44, 85, 163, 343, 422
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	3 cut(s)	75, 475, 524
MluCI	AATT	5 cut(s)	15, 320, 390, 515, 538
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	33, 124, 210, 239, 270, 394
MseI	TTAA	3 cut(s)	162, 291, 471
MspA1I	CMGCKG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	104, 432
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	4 cut(s)	133, 172, 220, 352
NmeAIII	GCCGAG	1 cut(s)	424
NspI	RCATGY	1 cut(s)	220
PaeR7I	CTCGAG	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	26, 303
PkrI	GCNGC	3 cut(s)	106, 109, 127
Ple19I	CGATCG	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	107
PvuI	CGATCG	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	162, 291, 471
SatI	GCNGC	3 cut(s)	105, 108, 126
Sau3AI	GATC	1 cut(s)	246
SetI	ASST	7 cut(s)	109, 116, 210, 265, 417, 502, 524
SfaNI	GCATC	5 cut(s)	44, 85, 163, 343, 422
SfcI	CTRYAG	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	15, 320, 390, 515, 538
SsiI	CCGC	1 cut(s)	374
StyI	CCWWGG	2 cut(s)	129, 427
TaqI	TCGA	4 cut(s)	204, 245, 275, 369
TasI	AATT	5 cut(s)	15, 320, 390, 515, 538
TfiI	GAWTC	2 cut(s)	26, 303
Tru1I	TTAA	3 cut(s)	162, 291, 471
Tru9I	TTAA	3 cut(s)	162, 291, 471
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	3 cut(s)	104, 107, 125
TspDTI	ATGAA	2 cut(s)	313, 333
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	339
XapI	RAATTY	4 cut(s)	15, 320, 390, 515
XceI	RCATGY	1 cut(s)	220
XhoI	CTCGAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.