Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016387

Physical Location & Seq

Genomic Coordinates Reverse (-)

30425909 .. 30429570

Gene Structure 3662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0213700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2628 bp

ATGGAAGAGAGCTTTGTTATAAGTCTTGGGGAGCAAGCTGAGGTGCCCATTATATCATTCTCTGCAACAAGCCCTTCTCTTACTTCACTGCGAAGCTCCTACTTTTTTCAGTTTGCACAAAATGACTCGGCCCAAGTAAAAGCATTAAGTGCAGTTGTAAAAGGTTTTGGATGGAGGCAAGTGGTGCTCATATACGTAGACAATGAGTTTGGGGAAGGAGTCGTACCATATTTAACTGATGCCTTGCAGGAGGTTGATGCCCGTGTACCATACCGGAGCATCGTTTCCCCATCAGCCACAGATAGCCAAATAGTTGAAGAGCTTTACAAGATAATGACGATGCAAACAAGGGTCTTCATCGTCCACATGACAACTGATTTGTCATCCAGGCTATTTGCCAAGGCAAAAGAGATTGGAATGATGAGTGAAGGCTATGTTTGGCTCACAACTAACAGCATACCTAATAGTTTGAAGTTTCTGAATTCTTCAGCCATAAATTCCATGCAAGGAGTATTAGGTGTGCAAACTTACATTCCAGCAACTGTAGAGTTTGAAGAATTCAAGCTCCGGTGGAAACAACAATTCCGCAAAGACAATCCAACCATCATTGATGCTGAGTTGAATATTTTTGCATTGTGGGCTTACGATGCTGCCTTTGCATTGGCCTTGGCAATTGAAGAAGTTAGGACTGCAAGCTTTGGTTTCCAAAGGAGCAATGCTTCCATCAACTCATCAACAGATCTTGAAAGTTTTGAGGTCTCTCAATATGGTCCAAAACTTTGCCAAGCACTGTCACTTACTAGATTTGAAGGCATAGCTGGAAATTTCAGCCTTGTTGATGGGCAGCGTCAAACATCAATTTTTCAGATAGTCAATATAAATGGTCGTGGAGCTAGAACAGTTGGATTTTGGACCTTGAAAAATGGAATCATGAGAAAATTGGGTTCACCATCATCAGTAAACTCGAGCATAAGTTCAACTTCTAAAGGCGATCTTGGACCAATTATATGGCCCGGAGATTCAATCTCTGTTCCCAAAGGATGGGTAAACCCAGCAAACGGCAAGAAGTTGAGAATAGGAGTTCCCGTAGAGGAAGGTTTCACTGAGTTCGTTTCTGTGACAAAAGATCCAAGCACTAACACAACATATGTCACAGGGTTCAGTATTGACGTCTTTAAGGCTGCAGTGGACATATTACCTTATGCTCTTTCTTACGAGTTGATTCCCTTTGCAAATCCTGATGGCACAATGGCTGGCACTTACAATGATTTGTGCTATCAAGTATATCTTGGGAAGTTTGATGCTGTGGCGGGAGATGTAACAATTAGAGGAAGTAGATCATTGTATGTAGATTTTACCATGCCATACACAGAATCTGGTGTTGTGATGGTTGTGCCACTCAAAGACATCAGGAGAAAAAGTGCGTGGGTTTTCTTAAAGCCTTTGACATGGGATCTTTGGCTGACAACCTCTTGTTTCTTTGTCCTTATTGGTTTCGTGGTTTGGGTTCTTGAACATCGAATCAATGCAGATTTTCGTGGCCCTCCCTCATATCAAGTTGGCACGAGCATCTGGTTTTCTTTCTCGACCATGGTTTTTTCACACAGGGAGAGAGTAGTTAGCAACTTGGCTAGATTTGTGATGATTATATGGGTATTTGTTATGCTAATATTGACACAAAGTTACACGGCTAATCTTGCGTCACTATTAACAGTCCAAAAACTTTACCCTGTTGTTACTGATCTAAAGCATTACTTAAGGAATGGGGATACTGTTGGCTACCAAAACAATACATATATTTATGATATCTTAAGAGAAATAGGCTTTGATGAGTCCAAGCTTAAGGCATATAAATCTGTTGAAGAATGTGATGCTCTTCTTTCGAAAGGCAGTGAAAATGGTGGTATTGCAGCTGCTATTGATGAAACTCCCAACATGAAGCTTTTTCTTGCAAAATATTGTTCCAAATATACTATGGTTGGACCAATTTTTAAAACTGATGGCTTTGCCTTTGTCTTTCCAAAAGGTTCTCCTCTTCTTCATGATGTTTCTCAAGCAATCCTAAACGTGACCGAAGGGGAGGTTATACTGAACATTGAAAACAAATGGTTCAATAAAGAAGGCAGTTGTCAAGATAACTCCAACCCAGGGGTTTCTAGCAACAGGCTTGGCCTTGAAACCTTTTGGGGCCTATTCCTCATTGCCGGGGTGGCTTCAGTACTCGCCCTCATCATATTTCTAGCTTCCTTCCTTTACGAGCATAGGCACGTTTTGATTCACACTGATCCAGGAGCCTCTACACAAGGAAAATTTCGAACTATGTTAGAAATTTTTAATGAAAAAGATTTTAGTTCTCATACATTTAAAACCACTCAACGAGATAGAGTCGCTAATATGGGAGATGCAGTTAATGCCATACTAAACAACTGCTTGGAAATTCCATTGGGAGACAGTTCAGACAGCGCAGATCCAAGTTCTCAGTTCATTGGAGAGCAACAAAATAGTACTACGACACCATCTACTGGTCAAGAGCCTGCAGAGGTGAATCCAGCTACTGAGGTTGATATAACAAATGATGGGGAAATGGAAGGCACTCCTGAAAGAGCTCAACATTTCTTCGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

875

Amino Acids

97.05

Weight (kDa)

5.11

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	4 - 295	9.3e-65	Receptor family ligand binding region
Peripla_BP_6	PF13458	9 - 230	1e-11	Periplasmic binding protein
Lig_chan-Glu_bd	PF10613	375 - 465	9.3e-06	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	383 - 705	1.8e-08	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	483 - 738	8.1e-39	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016387)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12030
malus_domestica	MD02G1202000.v1.1 MD07G1123300.v1.1
prunus_persica	Prupe.2G146900_v2.0.a1
pyrus_communis	pycom07g11200
rosa_chinensis	RchiOBHm_Chr1g0350741
rosa_laevigata	RLG00000028458
rosa_multiflora	Rmu_sc0007810.1_g000002
rosa_roxburghii	Rroxscaffold_4G00304540
rosa_rugosa	Rorug01G0213700
rosa_samantha	Rh1AG227900 Rh1BG197400 Rh1CG212800 Rh1DG225300
rosa_wichuraiana	Rw1G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
AatII	GACGTC	1 cut(s)	1173
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	2 cut(s)	1041, 2522
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	2 cut(s)	586, 1310
AclWI	GGATC	4 cut(s)	1121, 1461, 2279, 2462
AcsI	RAATTY	7 cut(s)	481, 496, 557, 823, 2309, 2328, 2436
AcuI	CTGAAG	2 cut(s)	471, 2199
AcyI	GRCGYC	1 cut(s)	1170
AfaI	GTAC	4 cut(s)	225, 267, 2220, 2506
AfiI	CCNNNNNNNGG	4 cut(s)	1041, 1058, 2148, 2522
AflII	CTTAAG	3 cut(s)	1756, 1810, 1841
AjnI	CCWGG	3 cut(s)	386, 2146, 2287
Alw21I	GWGCWC	2 cut(s)	189, 2608
Alw26I	GTCTC	2 cut(s)	763, 2442
AlwI	GGATC	4 cut(s)	1121, 1461, 2279, 2462
AlwNI	CAGNNNCTG	3 cut(s)	542, 1376, 2555
Ama87I	CYCGRG	1 cut(s)	964
AoxI	GGCC	6 cut(s)	129, 663, 1010, 1540, 2170, 2188
ApeKI	GCWGC	5 cut(s)	650, 844, 1181, 1910, 1913
ApoI	RAATTY	7 cut(s)	481, 496, 557, 823, 2309, 2328, 2436
ArsI	GACNNNNNNTTYG	4 cut(s)	191, 223, 361, 393
AspLEI	GCGC	1 cut(s)	2465
AspS9I	GGNCC	8 cut(s)	130, 770, 912, 998, 1011, 1541, 1982, 2188
AsuC2I	CCSGG	2 cut(s)	1014, 2206
AsuHPI	GGTGA	2 cut(s)	939, 2554
AsuII	TTCGAA	2 cut(s)	1883, 2314
AvaI	CYCGRG	1 cut(s)	964
AvaII	GGWCC	4 cut(s)	770, 912, 998, 1982
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	2608
BarI	GAAGNNNNNNTAC	2 cut(s)	207, 239
BauI	CACGAG	1 cut(s)	1564
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	2 cut(s)	189, 2608
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	5 cut(s)	637, 856, 1168, 1900, 1922
BceAI	ACGGC	2 cut(s)	1075, 1704
BciT130I	CCWGG	3 cut(s)	388, 2148, 2289
BciVI	GTATCC	1 cut(s)	1762
BcnI	CCSGG	2 cut(s)	1014, 2206
BcoDI	GTCTC	2 cut(s)	763, 2442
BfaI	CTAG	5 cut(s)	801, 894, 1632, 2157, 2240
BfmI	CTRYAG	3 cut(s)	543, 1182, 2535
BfrI	CTTAAG	3 cut(s)	1756, 1810, 1841
BfuI	GTATCC	1 cut(s)	1762
BglI	GCCNNNNNGGC	1 cut(s)	2210
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	5 cut(s)	651, 845, 1182, 1911, 1914
BlsI	GCNGC	5 cut(s)	652, 846, 1183, 1912, 1915
BmcAI	AGTACT	2 cut(s)	2220, 2506
Bme1390I	CCNGG	5 cut(s)	388, 1014, 2148, 2206, 2289
Bme18I	GGWCC	4 cut(s)	770, 912, 998, 1982
BmeT110I	CYCGRG	1 cut(s)	964
BmgT120I	GGNCC	8 cut(s)	130, 770, 912, 998, 1011, 1541, 1982, 2188
BmiI	GGNNCC	3 cut(s)	45, 2189, 2293
BmrFI	CCNGG	5 cut(s)	388, 1014, 2148, 2206, 2289
BpiI	GAAGAC	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu14I	TTCGAA	2 cut(s)	1883, 2314
BpuEI	CTTGAG	1 cut(s)	2037
BpuMI	CCSGG	2 cut(s)	1014, 2206
BsaAI	YACGTR	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	1170
BsaI	GGTCTC	1 cut(s)	763
BsaJI	CCNNGG	6 cut(s)	399, 666, 1590, 2146, 2147, 2205
BsaWI	WCCGGW	2 cut(s)	273, 567
BsaXI	ACNNNNNCTCC	6 cut(s)	1071, 1101, 1405, 1435, 2391, 2421
Bsc4I	CCNNNNNNNGG	4 cut(s)	1041, 1058, 2148, 2522
Bse1I	ACTGG	1 cut(s)	2527
Bse3DI	GCAATG	2 cut(s)	721, 2199
BseBI	CCWGG	3 cut(s)	388, 2148, 2289
BseDI	CCNNGG	6 cut(s)	399, 666, 1590, 2146, 2147, 2205
BseGI	GGATG	3 cut(s)	176, 383, 1046
BseLI	CCNNNNNNNGG	4 cut(s)	1041, 1058, 2148, 2522
BseMI	GCAATG	2 cut(s)	721, 2199
BseMII	CTCAG	5 cut(s)	30, 606, 1095, 2492, 2547
BseNI	ACTGG	1 cut(s)	2527
BseRI	GAGGAG	1 cut(s)	2022
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	5 cut(s)	637, 856, 1168, 1900, 1922
BseYI	CCCAGC	1 cut(s)	1051
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	6 cut(s)	131, 665, 1012, 1542, 2172, 2190
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	189, 2608
BsiHKCI	CYCGRG	1 cut(s)	964
BsiSI	CCGG	4 cut(s)	274, 568, 1014, 2205
BslI	CCNNNNNNNGG	4 cut(s)	1041, 1058, 2148, 2522
BsmAI	GTCTC	2 cut(s)	763, 2442
BsnI	GGCC	6 cut(s)	131, 665, 1012, 1542, 2172, 2190
Bso31I	GGTCTC	1 cut(s)	763
BsoBI	CYCGRG	1 cut(s)	964
Bsp119I	TTCGAA	2 cut(s)	1883, 2314
Bsp1286I	GDGCHC	3 cut(s)	48, 189, 2608
Bsp143I	GATC	8 cut(s)	739, 991, 1126, 1337, 1453, 1741, 2284, 2467
Bsp19I	CCATGG	1 cut(s)	1590
BspACI	CCGC	2 cut(s)	586, 1310
BspANI	GGCC	6 cut(s)	131, 665, 1012, 1542, 2172, 2190
BspCNI	CTCAG	5 cut(s)	31, 607, 1096, 2491, 2548
BspHI	TCATGA	2 cut(s)	930, 2041
BspLI	GGNNCC	3 cut(s)	45, 2189, 2293
BspMAI	CTGCAG	2 cut(s)	1186, 2539
BspPI	GGATC	4 cut(s)	1121, 1461, 2279, 2462
BspQI	GCTCTTC	2 cut(s)	312, 1881
BspT104I	TTCGAA	2 cut(s)	1883, 2314
BspT107I	GGYRCC	1 cut(s)	43
BspTI	CTTAAG	3 cut(s)	1756, 1810, 1841
BspTNI	GGTCTC	1 cut(s)	763
BsrDI	GCAATG	2 cut(s)	721, 2199
BsrI	ACTGG	1 cut(s)	2527
BssECI	CCNNGG	6 cut(s)	399, 666, 1590, 2146, 2147, 2205
BssMI	GATC	8 cut(s)	739, 991, 1126, 1337, 1453, 1741, 2284, 2467
BssNI	GRCGYC	1 cut(s)	1170
BssSI	CACGAG	1 cut(s)	1564
BssT1I	CCWWGG	3 cut(s)	399, 666, 1590
Bst2BI	CACGAG	1 cut(s)	1564
Bst2UI	CCWGG	3 cut(s)	388, 2148, 2289
Bst4CI	ACNGT	6 cut(s)	544, 792, 901, 1714, 1774, 2453
Bst6I	CTCTTC	3 cut(s)	312, 1881, 2040
BstACI	GRCGYC	1 cut(s)	1170
BstAFI	CTTAAG	3 cut(s)	1756, 1810, 1841
BstAPI	GCANNNNNTGC	3 cut(s)	149, 184, 2411
BstBAI	YACGTR	1 cut(s)	196
BstBI	TTCGAA	2 cut(s)	1883, 2314
BstC8I	GCNNGC	4 cut(s)	36, 694, 1255, 2535
BstDEI	CTNAG	5 cut(s)	39, 615, 1104, 2478, 2556
BstDSI	CCRYGG	1 cut(s)	1590
BstF5I	GGATG	3 cut(s)	176, 383, 1046
BstHHI	GCGC	1 cut(s)	2465
BstKTI	GATC	8 cut(s)	742, 994, 1129, 1340, 1456, 1744, 2287, 2470
BstMAI	GTCTC	2 cut(s)	763, 2442
BstMBI	GATC	8 cut(s)	739, 991, 1126, 1337, 1453, 1741, 2284, 2467
BstMWI	GCNNNNNNNGC	8 cut(s)	149, 184, 638, 647, 656, 1697, 2210, 2411
BstNI	CCWGG	3 cut(s)	388, 2148, 2289
BstSCI	CCNGG	5 cut(s)	386, 1012, 2146, 2204, 2287
BstSFI	CTRYAG	3 cut(s)	543, 1182, 2535
BstSLI	GKGCMC	1 cut(s)	48
BstSNI	TACGTA	1 cut(s)	196
BstV1I	GCAGC	5 cut(s)	637, 856, 1168, 1900, 1922
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	4 cut(s)	739, 1126, 1453, 2467
BstXI	CCANNNNNNTGG	1 cut(s)	1008
BstYI	RGATCY	4 cut(s)	739, 1126, 1453, 2467
BsuI	GTATCC	1 cut(s)	1762
BsuRI	GGCC	6 cut(s)	131, 665, 1012, 1542, 2172, 2190
BtgI	CCRYGG	1 cut(s)	1590
BtsCI	GGATG	3 cut(s)	176, 383, 1046
BtsI	GCAGTG	3 cut(s)	86, 1191, 1897
BtsIMutI	CAGTG	6 cut(s)	86, 788, 1101, 1191, 1897, 2280
Cac8I	GCNNGC	4 cut(s)	36, 694, 1255, 2535
CaiI	CAGNNNCTG	3 cut(s)	542, 1376, 2555
CciI	TCATGA	2 cut(s)	930, 2041
CfoI	GCGC	1 cut(s)	2465
Cfr13I	GGNCC	8 cut(s)	130, 770, 912, 998, 1011, 1541, 1982, 2188
CseI	GACGC	2 cut(s)	836, 1689
Csp6I	GTAC	4 cut(s)	224, 266, 2219, 2505
CviAII	CATG	8 cut(s)	367, 502, 931, 1360, 1449, 1591, 1936, 2042
CviQI	GTAC	4 cut(s)	224, 266, 2219, 2505
DdeI	CTNAG	5 cut(s)	39, 615, 1104, 2478, 2556
DpnI	GATC	8 cut(s)	741, 993, 1128, 1339, 1455, 1743, 2286, 2469
DpnII	GATC	8 cut(s)	739, 991, 1126, 1337, 1453, 1741, 2284, 2467
DraI	TTTAAA	2 cut(s)	1993, 2365
Eam1104I	CTCTTC	3 cut(s)	312, 1881, 2040
EarI	CTCTTC	3 cut(s)	312, 1881, 2040
Ecl136II	GAGCTC	1 cut(s)	2606
Eco105I	TACGTA	1 cut(s)	196
Eco130I	CCWWGG	3 cut(s)	399, 666, 1590
Eco24I	GRGCYC	1 cut(s)	2608
Eco31I	GGTCTC	1 cut(s)	763
Eco32I	GATATC	1 cut(s)	1807
Eco47I	GGWCC	4 cut(s)	770, 912, 998, 1982
Eco53kI	GAGCTC	1 cut(s)	2606
Eco57I	CTGAAG	2 cut(s)	471, 2199
Eco88I	CYCGRG	1 cut(s)	964
EcoICRI	GAGCTC	1 cut(s)	2606
EcoO109I	RGGNCCY	1 cut(s)	2188
EcoRI	GAATTC	2 cut(s)	481, 557
EcoRII	CCWGG	3 cut(s)	386, 2146, 2287
EcoRV	GATATC	1 cut(s)	1807
EcoT14I	CCWWGG	3 cut(s)	399, 666, 1590
EcoT38I	GRGCYC	1 cut(s)	2608
ErhI	CCWWGG	3 cut(s)	399, 666, 1590
FaeI	CATG	8 cut(s)	370, 505, 934, 1363, 1452, 1594, 1939, 2045
FalI	AAGNNNNNCTT	8 cut(s)	964, 996, 978, 1010, 1272, 1304, 1739, 1771
FatI	CATG	8 cut(s)	366, 501, 930, 1359, 1448, 1590, 1935, 2041
FauI	CCCGC	1 cut(s)	1303
FauNDI	CATATG	1 cut(s)	1147
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	651, 845, 1182, 1911, 1914
FokI	GGATG	3 cut(s)	183, 370, 1053
FriOI	GRGCYC	1 cut(s)	2608
Fsp4HI	GCNGC	5 cut(s)	651, 845, 1182, 1911, 1914
FspBI	CTAG	5 cut(s)	801, 894, 1632, 2157, 2240
GlaI	GCGC	1 cut(s)	2464
GluI	GCNGC	5 cut(s)	651, 845, 1182, 1911, 1914
GsaI	CCCAGC	1 cut(s)	1055
HaeIII	GGCC	6 cut(s)	131, 665, 1012, 1542, 2172, 2190
HapII	CCGG	4 cut(s)	274, 568, 1014, 2205
HgaI	GACGC	2 cut(s)	836, 1689
HhaI	GCGC	1 cut(s)	2465
Hin1I	GRCGYC	1 cut(s)	1170
Hin1II	CATG	8 cut(s)	370, 505, 934, 1363, 1452, 1594, 1939, 2045
Hin6I	GCGC	1 cut(s)	2463
HinP1I	GCGC	1 cut(s)	2463
HindIII	AAGCTT	3 cut(s)	694, 1838, 1940
HpaII	CCGG	4 cut(s)	274, 568, 1014, 2205
HphI	GGTGA	2 cut(s)	939, 2554
Hpy166II	GTNNAC	7 cut(s)	199, 266, 364, 947, 961, 1048, 1189
Hpy188I	TCNGA	3 cut(s)	480, 867, 2458
Hpy8I	GTNNAC	7 cut(s)	199, 266, 364, 947, 961, 1048, 1189
HpyAV	CCTTC	9 cut(s)	84, 209, 422, 803, 1088, 2069, 2114, 2257, 2582
HpyCH4III	ACNGT	6 cut(s)	544, 792, 901, 1714, 1774, 2453
HpyCH4IV	ACGT	4 cut(s)	195, 1170, 2067, 2268
HpyF10VI	GCNNNNNNNGC	8 cut(s)	149, 184, 638, 647, 656, 1697, 2210, 2411
HpyF3I	CTNAG	5 cut(s)	39, 615, 1104, 2478, 2556
HpySE526I	ACGT	4 cut(s)	195, 1170, 2067, 2268
Hsp92I	GRCGYC	1 cut(s)	1170
Hsp92II	CATG	8 cut(s)	370, 505, 934, 1363, 1452, 1594, 1939, 2045
HspAI	GCGC	1 cut(s)	2463
Kzo9I	GATC	8 cut(s)	739, 991, 1126, 1337, 1453, 1741, 2284, 2467
LguI	GCTCTTC	2 cut(s)	312, 1881
LmnI	GCTCC	7 cut(s)	31, 101, 276, 570, 711, 890, 2291
Lsp1109I	GCAGC	5 cut(s)	637, 856, 1168, 1900, 1922
MaeI	CTAG	5 cut(s)	801, 894, 1632, 2157, 2240
MaeII	ACGT	4 cut(s)	195, 1170, 2067, 2268
MaeIII	GTNAC	8 cut(s)	792, 1117, 1150, 1318, 1682, 1701, 1735, 2068
MalI	GATC	8 cut(s)	741, 993, 1128, 1339, 1455, 1743, 2286, 2469
MboI	GATC	8 cut(s)	739, 991, 1126, 1337, 1453, 1741, 2284, 2467
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	4 cut(s)	739, 1126, 1453, 2467
MhlI	GDGCHC	3 cut(s)	48, 189, 2608
MlyI	GAGTC	4 cut(s)	119, 228, 1841, 2394
MmeI	TCCRAC	4 cut(s)	623, 883, 1960, 2166
MspA1I	CMGCKG	1 cut(s)	1913
MspCI	CTTAAG	3 cut(s)	1756, 1810, 1841
MspI	CCGG	4 cut(s)	274, 568, 1014, 2205
MspR9I	CCNGG	5 cut(s)	388, 1014, 2148, 2206, 2289
MunI	CAATTG	1 cut(s)	672
MvaI	CCWGG	3 cut(s)	388, 2148, 2289
MwoI	GCNNNNNNNGC	8 cut(s)	149, 184, 638, 647, 656, 1697, 2210, 2411
NciI	CCSGG	2 cut(s)	1014, 2206
NcoI	CCATGG	1 cut(s)	1590
NdeI	CATATG	1 cut(s)	1147
NdeII	GATC	8 cut(s)	739, 991, 1126, 1337, 1453, 1741, 2284, 2467
NlaIII	CATG	8 cut(s)	370, 505, 934, 1363, 1452, 1594, 1939, 2045
NlaIV	GGNNCC	3 cut(s)	45, 2189, 2293
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	5 cut(s)	792, 1117, 1150, 1701, 2068
NspV	TTCGAA	2 cut(s)	1883, 2314
PaeR7I	CTCGAG	1 cut(s)	964
PagI	TCATGA	2 cut(s)	930, 2041
PasI	CCCWGGG	1 cut(s)	2147
PciSI	GCTCTTC	2 cut(s)	312, 1881
PfeI	GAWTC	7 cut(s)	927, 1019, 1222, 1373, 1521, 2275, 2545
PflMI	CCANNNNNTGG	2 cut(s)	1041, 2522
PfoI	TCCNGGA	1 cut(s)	2287
PkrI	GCNGC	5 cut(s)	652, 846, 1183, 1912, 1915
PleI	GAGTC	4 cut(s)	119, 227, 1840, 2393
PpsI	GAGTC	4 cut(s)	119, 227, 1840, 2393
Ppu21I	YACGTR	1 cut(s)	196
PsiI	TTATAA	1 cut(s)	20
Psp124BI	GAGCTC	1 cut(s)	2608
Psp6I	CCWGG	3 cut(s)	386, 2146, 2287
PspFI	CCCAGC	1 cut(s)	1051
PspGI	CCWGG	3 cut(s)	386, 2146, 2287
PspN4I	GGNNCC	3 cut(s)	45, 2189, 2293
PspPI	GGNCC	8 cut(s)	130, 770, 912, 998, 1011, 1541, 1982, 2188
PspXI	VCTCGAGB	1 cut(s)	964
PstI	CTGCAG	2 cut(s)	1186, 2539
PstNI	CAGNNNCTG	3 cut(s)	542, 1376, 2555
PsuI	RGATCY	4 cut(s)	739, 1126, 1453, 2467
PvuII	CAGCTG	1 cut(s)	1913
RsaI	GTAC	4 cut(s)	225, 267, 2220, 2506
RsaNI	GTAC	4 cut(s)	224, 266, 2219, 2505
SacI	GAGCTC	1 cut(s)	2608
SapI	GCTCTTC	2 cut(s)	312, 1881
SatI	GCNGC	5 cut(s)	651, 845, 1182, 1911, 1914
Sau3AI	GATC	8 cut(s)	739, 991, 1126, 1337, 1453, 1741, 2284, 2467
Sau96I	GGNCC	8 cut(s)	130, 770, 912, 998, 1011, 1541, 1982, 2188
ScaI	AGTACT	2 cut(s)	2220, 2506
SchI	GAGTC	4 cut(s)	119, 228, 1841, 2394
ScrFI	CCNGG	5 cut(s)	388, 1014, 2148, 2206, 2289
SduI	GDGCHC	3 cut(s)	48, 189, 2608
SfcI	CTRYAG	3 cut(s)	543, 1182, 2535
Sfr274I	CTCGAG	1 cut(s)	964
SfuI	TTCGAA	2 cut(s)	1883, 2314
SinI	GGWCC	4 cut(s)	770, 912, 998, 1982
SlaI	CTCGAG	1 cut(s)	964
SmlI	CTYRAG	5 cut(s)	964, 1756, 1810, 1841, 2052
SmoI	CTYRAG	5 cut(s)	964, 1756, 1810, 1841, 2052
SnaBI	TACGTA	1 cut(s)	196
SsiI	CCGC	2 cut(s)	586, 1310
SspI	AATATT	3 cut(s)	625, 1671, 1958
SspMI	CTAG	5 cut(s)	801, 894, 1632, 2157, 2240
SstI	GAGCTC	1 cut(s)	2608
StyD4I	CCNGG	5 cut(s)	386, 1012, 2146, 2204, 2287
StyI	CCWWGG	3 cut(s)	399, 666, 1590
TaaI	ACNGT	6 cut(s)	544, 792, 901, 1714, 1774, 2453
TaiI	ACGT	4 cut(s)	198, 1173, 2070, 2271
TaqI	TCGA	6 cut(s)	965, 1519, 1586, 1883, 2314, 2619
TaqII	GACCGA	1 cut(s)	2087
TatI	WGTACW	2 cut(s)	2218, 2504
TfiI	GAWTC	7 cut(s)	927, 1019, 1222, 1373, 1521, 2275, 2545
TscAI	CASTG	6 cut(s)	93, 795, 1108, 1191, 1897, 2287
TseFI	GTSAC	5 cut(s)	792, 1117, 1150, 1701, 2068
TseI	GCWGC	5 cut(s)	650, 844, 1181, 1910, 1913
Tsp45I	GTSAC	5 cut(s)	792, 1117, 1150, 1701, 2068
TspDTI	ATGAA	6 cut(s)	346, 1938, 1952, 2030, 2352, 2473
TspRI	CASTG	6 cut(s)	93, 795, 1108, 1191, 1897, 2287
Van91I	CCANNNNNTGG	2 cut(s)	1041, 2522
Vha464I	CTTAAG	3 cut(s)	1756, 1810, 1841
VpaK11BI	GGWCC	4 cut(s)	770, 912, 998, 1982
XapI	RAATTY	7 cut(s)	481, 496, 557, 823, 2309, 2328, 2436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1972
XhoI	CTCGAG	1 cut(s)	964
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	5 cut(s)	801, 894, 1632, 2157, 2240
ZraI	GACGTC	1 cut(s)	1171
ZrmI	AGTACT	2 cut(s)	2220, 2506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.