Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007810.1

Orthogroup ID

OG0016387

Physical Location & Seq

Genomic Coordinates Forward (+)

5879 .. 6376

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007810.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgtcttccaactttgatgcaccggcgactactgcatcgtcgtttgcggccatggaagtgtcaaatcagttcaagcaagtgtttgaggtgatagacgcaaacggggacgggaagatatctccggtggagctcagtgaagttctctgctgcctcgggtacaagaacaagtcctcggcggcgaaagaagccgaaggaatggtgagagagatggactgcaatggagacgggttcattgacttggatgagttcatgaatgctgtgaatgttaatgatacgaagaataacggctgtgatgatctcatggatgcttttcttatatttgatactgataagaacggaaagatttcagccaaggagttgaggagggtgctagttagccttggatgtgaaaaaagcagtctcaaagagtgtaagcaaatgatcaaaggggttgataagaatggagatggggtggtggattttgaagaatttaggttgatgatgacaagaaatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

165

Amino Acids

18.1

Weight (kDa)

4.53

Isoelectric Point (pI)

25.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016387)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12030
malus_domestica	MD02G1202000.v1.1 MD07G1123300.v1.1
prunus_persica	Prupe.2G146900_v2.0.a1
pyrus_communis	pycom07g11200
rosa_chinensis	RchiOBHm_Chr1g0350741
rosa_laevigata	RLG00000028458
rosa_multiflora	Rmu_sc0007810.1_g000002
rosa_roxburghii	Rroxscaffold_4G00304540
rosa_rugosa	Rorug01G0213700
rosa_samantha	Rh1AG227900 Rh1BG197400 Rh1CG212800 Rh1DG225300
rosa_wichuraiana	Rw1G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	47, 176
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	467
AfaI	GTAC	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	73, 464
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	216, 404
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	100, 211
AvaI	CYCGRG	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	2 cut(s)	202, 440
BceAI	ACGGC	1 cut(s)	301
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	216, 404
BfaI	CTAG	1 cut(s)	371
BisI	GCNGC	3 cut(s)	48, 148, 177
BlsI	GCNGC	3 cut(s)	49, 149, 178
BmeT110I	CYCGRG	1 cut(s)	152
BmsI	GCATC	3 cut(s)	7, 44, 295
BsaJI	CCNNGG	5 cut(s)	51, 151, 171, 351, 379
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bse118I	RCCGGY	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	223
BseDI	CCNNGG	5 cut(s)	51, 151, 171, 351, 379
BseGI	GGATG	3 cut(s)	247, 310, 389
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	23, 122
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	216, 404
BsmBI	CGTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	295, 420
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	2 cut(s)	47, 176
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	5 cut(s)	51, 151, 171, 351, 379
BssMI	GATC	2 cut(s)	295, 420
BssT1I	CCWWGG	3 cut(s)	51, 351, 379
BstDEI	CTNAG	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	247, 310, 389
BstKTI	GATC	2 cut(s)	298, 423
BstMAI	GTCTC	2 cut(s)	216, 404
BstMBI	GATC	2 cut(s)	295, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 185
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	247, 310, 389
BtsIMutI	CAGTG	1 cut(s)	139
CciI	TCATGA	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	22
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	3 cut(s)	52, 250, 301
CviJI	RGCY	6 cut(s)	50, 130, 188, 288, 350, 378
CviKI_1	RGCY	6 cut(s)	50, 130, 188, 288, 350, 378
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	297, 422
DpnII	GATC	2 cut(s)	295, 420
EaeI	YGGCCR	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	3 cut(s)	51, 351, 379
Eco24I	GRGCYC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	117
EcoT14I	CCWWGG	3 cut(s)	51, 351, 379
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	3 cut(s)	51, 351, 379
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	3 cut(s)	55, 253, 304
FaiI	YATR	4 cut(s)	53, 251, 302, 317
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	3 cut(s)	51, 249, 300
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	48, 148, 177
FokI	GGATG	3 cut(s)	254, 317, 396
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	3 cut(s)	48, 148, 177
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	3 cut(s)	48, 148, 177
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	23, 122
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	3 cut(s)	55, 253, 304
HpaII	CCGG	2 cut(s)	23, 122
HphI	GGTGA	2 cut(s)	100, 211
Hpy188III	TCNNGA	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	20, 35, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 185
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	55, 253, 304
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	295, 420
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	2 cut(s)	36, 135
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	3 cut(s)	7, 44, 295
MaeI	CTAG	1 cut(s)	371
MalI	GATC	2 cut(s)	297, 422
MboI	GATC	2 cut(s)	295, 420
MboII	GAAGA	3 cut(s)	124, 289, 476
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	467
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	79, 161, 181, 354, 357
MroXI	GAANNNNTTC	1 cut(s)	343
MseI	TTAA	2 cut(s)	267, 496
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	2 cut(s)	23, 122
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	32, 185
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	295, 420
NlaIII	CATG	3 cut(s)	55, 253, 304
NmeAIII	GCCGAG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	249
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	49, 149, 178
Psp124BI	GAGCTC	1 cut(s)	132
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	267, 496
SatI	GCNGC	3 cut(s)	48, 148, 177
Sau3AI	GATC	2 cut(s)	295, 420
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	3 cut(s)	90, 132, 476
SfaNI	GCATC	3 cut(s)	7, 44, 295
SgrAI	CRCCGGYG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	467
SsiI	CCGC	2 cut(s)	47, 176
SspMI	CTAG	1 cut(s)	371
SstI	GAGCTC	1 cut(s)	132
StyI	CCWWGG	3 cut(s)	51, 351, 379
TasI	AATT	1 cut(s)	467
TauI	GCSGC	2 cut(s)	50, 179
Tru1I	TTAA	2 cut(s)	267, 496
Tru9I	TTAA	2 cut(s)	267, 496
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	3 cut(s)	220, 238, 266
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	343
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.