Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0016387

Physical Location & Seq

Genomic Coordinates Forward (+)

11664565 .. 11665170

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g11200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGTTGTATCAGAATTTTCTTGGAATCAACCATCCAGAGGATGACAAGTGGATGCAAGAAAAGAAAGCCACCAAAACTTTCTTCCATCTTCGACGCGCCAGCGGCTACAACCTCATCTTTTGCAGCCATGGAAGTCTCCAACCAGTTCAAGCAAGTGTTTGAAGTCATGGATGCAAACGGGGACGGGAAAATCTCCCCTCTTGAGCTGAGTGTCATGCTTTCATGCCTTGGATACAAGAAGTCGATCGCCACAAAGGAAGCTGAAGGGATTGTGAGGGAAATGGATTTTAATGGAGACGGATTCATAGACTTGGATGAATTCATGACTGCAGTGAATGTTGATAGATCAAGAAATAATAGTAAAATGTTGGGTTTGGGAATGAGGAAGAAGAGTGAACTCATGGATGCTTTTCGTATTTTCGATGCGGATAAGAACGGGAAAATTTCAGCCGAGGAGTTGCAGAAGGTTTTGGTGAGCCTTGGATGCCAAAAATGTAGTCTGAAAGAGTGTAGGAAGATGATTAAAGGGGTTGATAGGAATGGAGATGGAGCTGTGGATTTTGAAGAATTTAGGTTGATGATGACAAGAAATTATGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

202

Amino Acids

22.44

Weight (kDa)

8.49

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	49 - 111	3.7e-13	EF-hand domain pair
EF-hand_5	PF13202	50 - 73	1.2e-06	EF hand
EF-hand_7	PF13499	132 - 195	1.7e-13	EF-hand domain pair
EF-hand_1	PF00036	133 - 160	1.3e-07	EF hand domain
EF-hand_6	PF13405	133 - 162	1.4e-08	EF-hand domain
EF-hand_5	PF13202	135 - 158	3.7e-08	EF hand
EF-hand_8	PF13833	146 - 198	9.8e-12	EF-hand domain pair
EF-hand_1	PF00036	170 - 197	2e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016387)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12030
malus_domestica	MD02G1202000.v1.1 MD07G1123300.v1.1
prunus_persica	Prupe.2G146900_v2.0.a1
pyrus_communis	pycom07g11200
rosa_chinensis	RchiOBHm_Chr1g0350741
rosa_laevigata	RLG00000028458
rosa_multiflora	Rmu_sc0007810.1_g000002
rosa_roxburghii	Rroxscaffold_4G00304540
rosa_rugosa	Rorug01G0213700
rosa_samantha	Rh1AG227900 Rh1BG197400 Rh1CG212800 Rh1DG225300
rosa_wichuraiana	Rw1G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	98
AciI	CCGC	2 cut(s)	104, 428
AcsI	RAATTY	4 cut(s)	15, 320, 444, 569
AcuI	CTGAAG	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	151, 164, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	3 cut(s)	208, 263, 554
AluI	AGCT	3 cut(s)	208, 263, 554
Alw26I	GTCTC	2 cut(s)	142, 291
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	4 cut(s)	15, 320, 444, 569
ArsI	GACNNNNNNTTYG	2 cut(s)	484, 516
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	3 cut(s)	41, 95, 542
BciVI	GTATCC	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	142, 291
BfmI	CTRYAG	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	105, 126
BlsI	GCNGC	2 cut(s)	106, 127
BmsI	GCATC	5 cut(s)	44, 163, 397, 415, 476
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	4 cut(s)	129, 229, 453, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	4 cut(s)	129, 229, 453, 481
BseGI	GGATG	7 cut(s)	33, 48, 59, 178, 322, 412, 491
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	2 cut(s)	142, 291
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	246, 347
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	2 cut(s)	104, 428
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	4 cut(s)	129, 229, 453, 481
BssMI	GATC	2 cut(s)	246, 347
BssT1I	CCWWGG	3 cut(s)	129, 229, 481
Bst6I	CTCTTC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	7 cut(s)	33, 48, 59, 178, 322, 412, 491
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	249, 350
BstMAI	GTCTC	2 cut(s)	142, 291
BstMBI	GATC	2 cut(s)	246, 347
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 486
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	7 cut(s)	33, 48, 59, 178, 322, 412, 491
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	102
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	1 cut(s)	100
CseI	GACGC	1 cut(s)	104
CviAII	CATG	6 cut(s)	130, 169, 217, 225, 325, 403
CviJI	RGCY	8 cut(s)	70, 107, 128, 208, 263, 452, 480, 554
CviKI_1	RGCY	8 cut(s)	70, 107, 128, 208, 263, 452, 480, 554
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	2 cut(s)	248, 349
DpnII	GATC	2 cut(s)	246, 347
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco130I	CCWWGG	3 cut(s)	129, 229, 481
Eco57I	CTGAAG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	320
EcoT14I	CCWWGG	3 cut(s)	129, 229, 481
ErhI	CCWWGG	3 cut(s)	129, 229, 481
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	6 cut(s)	133, 172, 220, 228, 328, 406
FaiI	YATR	8 cut(s)	131, 170, 218, 226, 308, 326, 404, 597
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	6 cut(s)	129, 168, 216, 224, 324, 402
Fnu4HI	GCNGC	2 cut(s)	105, 126
FokI	GGATG	7 cut(s)	20, 55, 66, 185, 329, 419, 498
Fsp4HI	GCNGC	2 cut(s)	105, 126
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	105, 126
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	6 cut(s)	133, 172, 220, 228, 328, 406
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	2 cut(s)	26, 303
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	2 cut(s)	14, 504
Hpy188III	TCNNGA	4 cut(s)	37, 203, 325, 351
Hpy8I	GTNNAC	1 cut(s)	398
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	260, 460
HpyCH4V	TGCA	5 cut(s)	57, 125, 176, 332, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 486
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	6 cut(s)	133, 172, 220, 228, 328, 406
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	246, 347
LmnI	GCTCC	1 cut(s)	551
LpnPI	CCDG	3 cut(s)	50, 114, 158
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	5 cut(s)	44, 163, 397, 415, 476
MalI	GATC	2 cut(s)	248, 349
MboI	GATC	2 cut(s)	246, 347
MboII	GAAGA	6 cut(s)	75, 82, 400, 403, 529, 578
MluCI	AATT	5 cut(s)	15, 320, 444, 569, 592
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	33, 124, 210, 270, 378, 448
MseI	TTAA	2 cut(s)	291, 525
MspA1I	CMGCKG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	104, 486
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	246, 347
NlaIII	CATG	6 cut(s)	133, 172, 220, 228, 328, 406
NmeAIII	GCCGAG	1 cut(s)	478
PagI	TCATGA	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	26, 303
PkrI	GCNGC	2 cut(s)	106, 127
Ple19I	CGATCG	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	334
PvuI	CGATCG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	291, 525
SatI	GCNGC	2 cut(s)	105, 126
Sau3AI	GATC	2 cut(s)	246, 347
SetI	ASST	6 cut(s)	116, 210, 265, 471, 556, 578
SfaNI	GCATC	5 cut(s)	44, 163, 397, 415, 476
SfcI	CTRYAG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	15, 320, 444, 569, 592
SsiI	CCGC	2 cut(s)	104, 428
StyI	CCWWGG	3 cut(s)	129, 229, 481
TaqI	TCGA	3 cut(s)	93, 245, 423
TasI	AATT	5 cut(s)	15, 320, 444, 569, 592
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	26, 303
Tru1I	TTAA	2 cut(s)	291, 525
Tru9I	TTAA	2 cut(s)	291, 525
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	4 cut(s)	213, 295, 313, 333
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	339
XapI	RAATTY	4 cut(s)	15, 320, 444, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.