MD07G1128600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016201
Physical Location & Seq
Forward (+)
18389409 .. 18390484
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1128600.v1.1.491

Sequence Viewer

Length: 531 bp
ATGGCAGAAGCAGACCCAGAACCGCCGCCGCCACCATTCCCACCACCACCACCACCGCCACCACTGTCCGACCTTATCCTCTCCCTAGAACAAGCAACCCTTATGGCCAAACAGCTCCCTTGCACCGCCGACCCCACTCACCTCCTCCACATCCATTCCTCCCTCCACCAAGCCCACCTGCACCTCTCCAATTTTCTCTCCACACACAAATTGCCCCAGCCCCAGCGACAGAACTCCCTCTCCTCCGCCACCGGCAACGAGCCCATGCAAGTCGGCGATGGCGATGGCGACGATGATTGTGATGGCTTTGGAGAGGGGGATTCCAGGCCCACAATTGACATGGTTGAGGAGCAGATGAGGGATTGCTTCATCAAGAACAAGCGGCCCAAGAGGCGGCTTTCGCCTTCTGCGGCGGCCCTGGCGGAGGAGAGGCGGATGAACGGTGATGGGTTTGTGGGGAGTGTGAAGGGTTTTGATCCTCATGGCTCAAAGGAGAGGGCTTTGGAGCTTGTGTACCAGTTTCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.24

Weight (kDa)

5.38

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01840
malus_domestica MD07G1128600.v1.1
prunus_persica Prupe.2G154500_v2.0.a1
pyrus_communis pycom01g07660 pycom01g07700 pycom07g12440
rosa_chinensis RchiOBHm_Chr1g0352211
rosa_laevigata RLG00000028347
rosa_multiflora Rmu_sc0011915.1_g000008
rosa_roxburghii Rroxscaffold_4G00303080
rosa_rugosa Rorug01G0226100
rosa_samantha Rh1AG240400 Rh1BG211300 Rh1DG237800
rosa_wichuraiana Rw1G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 470
AcoI YGGCCR 1 cut(s) 105
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 393, 424
AjnI CCWGG 2 cut(s) 323, 417
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 2 cut(s) 115, 508
AluI AGCT 2 cut(s) 115, 508
AlwI GGATC 1 cut(s) 470
AoxI GGCC 4 cut(s) 105, 326, 383, 414
AspS9I GGNCC 3 cut(s) 327, 384, 415
AsuHPI GGTGA 2 cut(s) 131, 455
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 264
BccI CCATC 4 cut(s) 272, 278, 296, 440
BciT130I CCWGG 2 cut(s) 325, 419
BfaI CTAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 186
BglI GCCNNNNNGGC 1 cut(s) 391
BisI GCNGC 6 cut(s) 26, 29, 383, 395, 411, 414
BlsI GCNGC 6 cut(s) 27, 30, 384, 396, 412, 415
Bme1390I CCNGG 2 cut(s) 325, 419
BmgT120I GGNCC 3 cut(s) 327, 384, 415
BmrFI CCNGG 2 cut(s) 325, 419
BsaJI CCNNGG 1 cut(s) 417
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 497, 527
Bsc4I CCNNNNNNNGG 2 cut(s) 393, 424
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 517
BseBI CCWGG 2 cut(s) 325, 419
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 2 cut(s) 150, 441
BseLI CCNNNNNNNGG 2 cut(s) 393, 424
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 4 cut(s) 134, 232, 362, 440
BseYI CCCAGC 2 cut(s) 216, 222
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 4 cut(s) 107, 328, 385, 416
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 393, 424
BsnI GGCC 4 cut(s) 107, 328, 385, 416
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 475
BspANI GGCC 4 cut(s) 107, 328, 385, 416
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 1 cut(s) 475
Bst2UI CCWGG 2 cut(s) 325, 419
Bst4CI ACNGT 2 cut(s) 66, 443
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 150, 441
BstKTI GATC 1 cut(s) 478
BstMBI GATC 1 cut(s) 475
BstMWI GCNNNNNNNGC 3 cut(s) 391, 400, 419
BstNI CCWGG 2 cut(s) 325, 419
BstSCI CCNGG 2 cut(s) 323, 417
BstXI CCANNNNNNTGG 1 cut(s) 524
BsuRI GGCC 4 cut(s) 107, 328, 385, 416
BtgZI GCGATG 2 cut(s) 291, 297
BtsCI GGATG 2 cut(s) 150, 441
BtsIMutI CAGTG 1 cut(s) 62
BveI ACCTGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 3 cut(s) 327, 384, 415
Csp6I GTAC 1 cut(s) 514
CviAII CATG 4 cut(s) 265, 340, 482, 524
CviQI GTAC 1 cut(s) 514
DpnI GATC 1 cut(s) 477
DpnII GATC 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 105
EciI GGCGGA 3 cut(s) 235, 437, 448
Eco24I GRGCYC 1 cut(s) 264
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 323, 417
EcoT38I GRGCYC 1 cut(s) 264
FaeI CATG 4 cut(s) 268, 343, 485, 527
FaiI YATR 5 cut(s) 104, 266, 341, 483, 525
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 4 cut(s) 264, 339, 481, 523
Fnu4HI GCNGC 6 cut(s) 26, 29, 383, 395, 411, 414
FokI GGATG 2 cut(s) 137, 448
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 6 cut(s) 26, 29, 383, 395, 411, 414
FspBI CTAG 1 cut(s) 86
GluI GCNGC 6 cut(s) 26, 29, 383, 395, 411, 414
GsaI CCCAGC 2 cut(s) 220, 226
HaeIII GGCC 4 cut(s) 107, 328, 385, 416
HapII CCGG 1 cut(s) 252
Hin1II CATG 4 cut(s) 268, 343, 485, 527
HinfI GANTC 1 cut(s) 320
HpaII CCGG 1 cut(s) 252
HphI GGTGA 2 cut(s) 131, 455
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 414, 460
HpyCH4III ACNGT 2 cut(s) 66, 443
HpyCH4V TGCA 3 cut(s) 123, 181, 268
HpyF10VI GCNNNNNNNGC 3 cut(s) 391, 400, 419
Hsp92II CATG 4 cut(s) 268, 343, 485, 527
Kzo9I GATC 1 cut(s) 475
LmnI GCTCC 3 cut(s) 120, 349, 505
LpnPI CCDG 9 cut(s) 30, 191, 230, 236, 265, 310, 337, 404, 431
MaeI CTAG 1 cut(s) 86
MalI GATC 1 cut(s) 477
MboI GATC 1 cut(s) 475
MfeI CAATTG 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 3 cut(s) 190, 209, 333
MluNI TGGCCA 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 93
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 325, 419
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 2 cut(s) 325, 419
MwoI GCNNNNNNNGC 3 cut(s) 391, 400, 419
NdeII GATC 1 cut(s) 475
NlaIII CATG 4 cut(s) 268, 343, 485, 527
PaqCI CACCTGC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 6 cut(s) 27, 30, 384, 396, 412, 415
Psp6I CCWGG 2 cut(s) 323, 417
PspFI CCCAGC 2 cut(s) 216, 222
PspGI CCWGG 2 cut(s) 323, 417
PspPI GGNCC 3 cut(s) 327, 384, 415
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SatI GCNGC 6 cut(s) 26, 29, 383, 395, 411, 414
Sau3AI GATC 1 cut(s) 475
Sau96I GGNCC 3 cut(s) 327, 384, 415
ScrFI CCNGG 2 cut(s) 325, 419
SduI GDGCHC 1 cut(s) 264
SetI ASST 6 cut(s) 75, 117, 144, 180, 186, 510
Sse9I AATT 3 cut(s) 190, 209, 333
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 323, 417
TaaI ACNGT 2 cut(s) 66, 443
TasI AATT 3 cut(s) 190, 209, 333
TauI GCSGC 6 cut(s) 28, 31, 385, 397, 413, 416
TfiI GAWTC 1 cut(s) 320
TscAI CASTG 1 cut(s) 69
TspDTI ATGAA 3 cut(s) 358, 452, 512
TspRI CASTG 1 cut(s) 69
XagI CCTNNNNNAGG 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.