Rh1DG237800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016201
Physical Location & Seq
Reverse (-)
45206329 .. 45206736
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG237800.1

Sequence Viewer

Length: 408 bp
ATGGCCAAGCAGCTCCCTTCCACCTCCGACCCAACTCACCTCCTCCACATCCACTCCTCCCTCCACCAAGCCCACCACCACCTCTCCACCTTCCTCTCCACAACCCACATCCCCCAGCCGCCTCCCGCCGCCGAGAACTCCCTCTCCTCCGCCACCGGCAACGACCCGATGGACTTCGGCGGCGATGAGGAGAATTCCAAGAGCACAATTGAGAGGGTGGAGGAGCAGATGAGGGGCTGCTTCATTAAGAATAAGAGGGGGAGGAAGAGGCAGCTTTCGCCTTCTGCGGCGGCCGTGGCGGAGGAGAGACGGCTCAACGGTGATGGGCTTGTGGGCAATGTGGTGGGTTTTGATCCTCATGAAACCAGGTCGAGGGCATTGGAGCTTGTGTACCAGTTTCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.91

Weight (kDa)

6.54

Isoelectric Point (pI)

59.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01840
malus_domestica MD07G1128600.v1.1
prunus_persica Prupe.2G154500_v2.0.a1
pyrus_communis pycom01g07660 pycom01g07700 pycom07g12440
rosa_chinensis RchiOBHm_Chr1g0352211
rosa_laevigata RLG00000028347
rosa_multiflora Rmu_sc0011915.1_g000008
rosa_roxburghii Rroxscaffold_4G00303080
rosa_rugosa Rorug01G0226100
rosa_samantha Rh1AG240400 Rh1BG211300 Rh1DG237800
rosa_wichuraiana Rw1G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 119, 126, 129, 150, 180, 287, 290, 299
AclWI GGATC 1 cut(s) 347
AcoI YGGCCR 2 cut(s) 3, 291
AcsI RAATTY 1 cut(s) 193
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 372
AjnI CCWGG 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 3 cut(s) 13, 274, 385
AluI AGCT 3 cut(s) 13, 274, 385
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 1 cut(s) 347
AoxI GGCC 2 cut(s) 3, 291
ApeKI GCWGC 3 cut(s) 10, 237, 271
ApoI RAATTY 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 29, 332
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 3 cut(s) 22, 224, 283
BccI CCATC 2 cut(s) 163, 317
BceAI ACGGC 2 cut(s) 278, 326
BciT130I CCWGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 301
BisI GCNGC 8 cut(s) 11, 119, 129, 181, 238, 272, 288, 291
BlsI GCNGC 8 cut(s) 12, 120, 130, 182, 239, 273, 289, 292
Bme1390I CCNGG 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 294
BsaXI ACNNNNNCTCC 8 cut(s) 38, 68, 68, 98, 128, 158, 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 48, 108
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMI GCAATG 1 cut(s) 343
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 6 cut(s) 32, 46, 136, 203, 236, 317
BseX3I CGGCCG 1 cut(s) 291
BseXI GCAGC 3 cut(s) 22, 224, 283
BseYI CCCAGC 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 5, 293
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 301
BsmBI CGTCTC 1 cut(s) 301
BsnI GGCC 2 cut(s) 5, 293
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 8 cut(s) 119, 126, 129, 150, 180, 287, 290, 299
BspANI GGCC 2 cut(s) 5, 293
BspHI TCATGA 1 cut(s) 358
BspPI GGATC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 260
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 48, 108
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 1 cut(s) 352
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 277, 296
BstNI CCWGG 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 365
BstV1I GCAGC 3 cut(s) 22, 224, 283
BstZI CGGCCG 1 cut(s) 291
BsuRI GGCC 2 cut(s) 5, 293
BtgI CCRYGG 1 cut(s) 294
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 48, 108
CciI TCATGA 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 155
CsiI ACCWGGT 1 cut(s) 365
Csp6I GTAC 1 cut(s) 391
CviAII CATG 1 cut(s) 359
CviQI GTAC 1 cut(s) 391
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
EaeI YGGCCR 2 cut(s) 3, 291
EagI CGGCCG 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 2 cut(s) 139, 314
EclXI CGGCCG 1 cut(s) 291
Eco52I CGGCCG 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 365
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 1 cut(s) 362
FaiI YATR 1 cut(s) 360
FatI CATG 1 cut(s) 358
FauI CCCGC 1 cut(s) 133
Fnu4HI GCNGC 8 cut(s) 11, 119, 129, 181, 238, 272, 288, 291
FokI GGATG 2 cut(s) 35, 95
Fsp4HI GCNGC 8 cut(s) 11, 119, 129, 181, 238, 272, 288, 291
GluI GCNGC 8 cut(s) 11, 119, 129, 181, 238, 272, 288, 291
GsaI CCCAGC 1 cut(s) 118
HaeIII GGCC 2 cut(s) 5, 293
HapII CCGG 1 cut(s) 156
Hin1II CATG 1 cut(s) 362
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 29, 332
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 3 cut(s) 27, 100, 291
HpyCH4III ACNGT 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 296
Hsp92II CATG 1 cut(s) 362
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 3 cut(s) 18, 223, 382
LpnPI CCDG 4 cut(s) 128, 169, 352, 379
Lsp1109I GCAGC 3 cut(s) 22, 224, 283
MabI ACCWGGT 1 cut(s) 365
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 1 cut(s) 277
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 206
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 193, 207
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 51
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 246
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 367
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 367
MwoI GCNNNNNNNGC 2 cut(s) 277, 296
NdeII GATC 1 cut(s) 352
NlaIII CATG 1 cut(s) 362
NmeAIII GCCGAG 1 cut(s) 157
PagI TCATGA 1 cut(s) 358
PkrI GCNGC 8 cut(s) 12, 120, 130, 182, 239, 273, 289, 292
Psp6I CCWGG 1 cut(s) 365
PspFI CCCAGC 1 cut(s) 114
PspGI CCWGG 1 cut(s) 365
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 8 cut(s) 11, 119, 129, 181, 238, 272, 288, 291
Sau3AI GATC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 1 cut(s) 206
SetI ASST 8 cut(s) 15, 26, 42, 84, 92, 276, 371, 387
SexAI ACCWGGT 1 cut(s) 365
Sse9I AATT 2 cut(s) 193, 207
SsiI CCGC 8 cut(s) 119, 126, 129, 150, 180, 287, 290, 299
StyD4I CCNGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 371
TasI AATT 2 cut(s) 193, 207
TauI GCSGC 5 cut(s) 121, 131, 183, 290, 293
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseI GCWGC 3 cut(s) 10, 237, 271
TspDTI ATGAA 3 cut(s) 232, 375, 389
XapI RAATTY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.