pycom01g07700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016201
Physical Location & Seq
Forward (+)
8662675 .. 8663214
540 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07700.2

Sequence Viewer

Length: 489 bp
ATGATACTGTATGCGCTATTTCCATGTAATATGCAAAGAACAAGACTTTGTTGCTGGCTGAGATTTCAGCAGGAGGTTCTGTTTACACCCAATTCAGAGTGTACACGTGTTCAAATTTTGATTAAAAAAATCAAAACTTGGACAAGTATCCACCTGCGATTGGGTGTAAGCAGAAATTCCTTTAATTCCATATGCAAAATATACAACCAACGAGATGAATTGTCTTTTTTATCCATTTCTTTAGGCGACGATGACTGTGATGGCTTTGGAGAGGCGAATTCTGGGCCCAAAATTGACATGGTTGAGGAGCAGATGAGGGATTGCTTCATCAAGAACAAGCGGCCCAAAAGGCGGCTTTCTCCTTCTGCGGCCGCCCTGGCGGAGGAGAGGCGGCTTAACGTTGATGGGTTTTTGGGGAGTGTGAAGAGTTTTGACCCTCAGGGCTCAAAGGAGAGGGCTTTGGAGCTTGTGTACCAGTTTCATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.67

Weight (kDa)

8.89

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01840
malus_domestica MD07G1128600.v1.1
prunus_persica Prupe.2G154500_v2.0.a1
pyrus_communis pycom01g07660 pycom01g07700 pycom07g12440
rosa_chinensis RchiOBHm_Chr1g0352211
rosa_laevigata RLG00000028347
rosa_multiflora Rmu_sc0011915.1_g000008
rosa_roxburghii Rroxscaffold_4G00303080
rosa_rugosa Rorug01G0226100
rosa_samantha Rh1AG240400 Rh1BG211300 Rh1DG237800
rosa_wichuraiana Rw1G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 162
Acc36I ACCTGC 1 cut(s) 162
AciI CCGC 6 cut(s) 340, 352, 368, 372, 380, 391
AclI AACGTT 1 cut(s) 399
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 3 cut(s) 114, 175, 277
AcvI CACGTG 1 cut(s) 107
AfaI GTAC 2 cut(s) 103, 473
AfiI CCNNNNNNNGG 3 cut(s) 160, 351, 382
AflIII ACRYGT 2 cut(s) 104, 106
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 1 cut(s) 466
AluI AGCT 1 cut(s) 466
AoxI GGCC 3 cut(s) 284, 341, 369
ApaI GGGCCC 1 cut(s) 288
ApoI RAATTY 3 cut(s) 114, 175, 277
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 3 cut(s) 284, 285, 342
AxyI CCTNAGG 1 cut(s) 438
BaeGI GKGCMC 1 cut(s) 288
BanII GRGCYC 2 cut(s) 288, 446
BbrPI CACGTG 1 cut(s) 107
BccI CCATC 2 cut(s) 254, 398
BciT130I CCWGG 1 cut(s) 377
BciVI GTATCC 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 162
BfuI GTATCC 1 cut(s) 158
BglI GCCNNNNNGGC 2 cut(s) 349, 377
BisI GCNGC 5 cut(s) 341, 353, 369, 372, 392
BlsI GCNGC 5 cut(s) 342, 354, 370, 373, 393
Bme1390I CCNGG 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 284, 285, 342
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 375
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 455, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 351, 382
Bse1I ACTGG 1 cut(s) 475
Bse21I CCTNAGG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 375
BseLI CCNNNNNNNGG 3 cut(s) 160, 351, 382
BseMII CTCAG 2 cut(s) 50, 452
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 2 cut(s) 320, 398
BseSI GKGCMC 1 cut(s) 288
BseX3I CGGCCG 1 cut(s) 369
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 3 cut(s) 286, 343, 371
BsiEI CGRYCG 1 cut(s) 372
BslI CCNNNNNNNGG 3 cut(s) 160, 351, 382
BsnI GGCC 3 cut(s) 286, 343, 371
Bsp120I GGGCCC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 288, 446
Bsp1407I TGTACA 1 cut(s) 101
BspACI CCGC 6 cut(s) 340, 352, 368, 372, 380, 391
BspANI GGCC 3 cut(s) 286, 343, 371
BspCNI CTCAG 2 cut(s) 51, 451
BspLI GGNNCC 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 162
BsrGI TGTACA 1 cut(s) 101
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 9, 257
Bst6I CTCTTC 1 cut(s) 419
BstAUI TGTACA 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 59, 438
BstENI CCTNNNNNAGG 1 cut(s) 380
BstHHI GCGC 1 cut(s) 16
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 2 cut(s) 349, 377
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSLI GKGCMC 1 cut(s) 288
BstXI CCANNNNNNTGG 1 cut(s) 482
BstZI CGGCCG 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 438
BsuI GTATCC 1 cut(s) 158
BsuRI GGCC 3 cut(s) 286, 343, 371
BveI ACCTGC 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 56
CciNI GCGGCCGC 1 cut(s) 369
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 3 cut(s) 284, 285, 342
Csp6I GTAC 2 cut(s) 102, 472
CviAII CATG 3 cut(s) 24, 298, 482
CviQI GTAC 2 cut(s) 102, 472
DdeI CTNAG 2 cut(s) 59, 438
EaeI YGGCCR 1 cut(s) 369
EagI CGGCCG 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
EciI GGCGGA 1 cut(s) 395
EclXI CGGCCG 1 cut(s) 369
Eco24I GRGCYC 2 cut(s) 288, 446
Eco52I CGGCCG 1 cut(s) 369
Eco72I CACGTG 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 438
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 375
EcoT38I GRGCYC 2 cut(s) 288, 446
FaeI CATG 3 cut(s) 27, 301, 485
FaiI YATR 8 cut(s) 12, 25, 32, 191, 193, 202, 299, 483
FatI CATG 3 cut(s) 23, 297, 481
FauNDI CATATG 1 cut(s) 191
Fnu4HI GCNGC 5 cut(s) 341, 353, 369, 372, 392
FriOI GRGCYC 2 cut(s) 288, 446
Fsp4HI GCNGC 5 cut(s) 341, 353, 369, 372, 392
GlaI GCGC 1 cut(s) 15
GluI GCNGC 5 cut(s) 341, 353, 369, 372, 392
HaeIII GGCC 3 cut(s) 286, 343, 371
HhaI GCGC 1 cut(s) 16
Hin1II CATG 3 cut(s) 27, 301, 485
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
Hpy166II GTNNAC 4 cut(s) 84, 102, 104, 472
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 4 cut(s) 84, 102, 104, 472
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 2 cut(s) 9, 257
HpyCH4IV ACGT 2 cut(s) 106, 399
HpyCH4V TGCA 2 cut(s) 34, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 377
HpyF3I CTNAG 2 cut(s) 59, 438
HpySE526I ACGT 2 cut(s) 106, 399
Hsp92II CATG 3 cut(s) 27, 301, 485
HspAI GCGC 1 cut(s) 14
LmnI GCTCC 2 cut(s) 307, 463
LpnPI CCDG 7 cut(s) 40, 56, 167, 267, 362, 389, 425
MaeII ACGT 2 cut(s) 106, 399
MboII GAAGA 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 288, 446
MluCI AATT 7 cut(s) 91, 114, 175, 184, 218, 277, 291
MnlI CCTC 8 cut(s) 67, 265, 298, 309, 376, 381, 447, 447
MseI TTAA 3 cut(s) 123, 183, 396
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 2 cut(s) 349, 377
NdeI CATATG 1 cut(s) 191
NlaIII CATG 3 cut(s) 27, 301, 485
NlaIV GGNNCC 1 cut(s) 286
NotI GCGGCCGC 1 cut(s) 369
PaqCI CACCTGC 1 cut(s) 162
PkrI GCNGC 5 cut(s) 342, 354, 370, 373, 393
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 107
Psp1406I AACGTT 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 375
PspCI CACGTG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 286
PspOMI GGGCCC 1 cut(s) 284
PspPI GGNCC 3 cut(s) 284, 285, 342
RsaI GTAC 2 cut(s) 103, 473
RsaNI GTAC 2 cut(s) 102, 472
SaqAI TTAA 3 cut(s) 123, 183, 396
SatI GCNGC 5 cut(s) 341, 353, 369, 372, 392
Sau96I GGNCC 3 cut(s) 284, 285, 342
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 2 cut(s) 288, 446
SetI ASST 5 cut(s) 78, 109, 156, 402, 468
Sse9I AATT 7 cut(s) 91, 114, 175, 184, 218, 277, 291
SsiI CCGC 6 cut(s) 340, 352, 368, 372, 380, 391
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 2 cut(s) 9, 257
TaiI ACGT 2 cut(s) 109, 402
TasI AATT 7 cut(s) 91, 114, 175, 184, 218, 277, 291
TatI WGTACW 1 cut(s) 101
TauI GCSGC 5 cut(s) 343, 355, 371, 374, 394
Tru1I TTAA 3 cut(s) 123, 183, 396
Tru9I TTAA 3 cut(s) 123, 183, 396
TspDTI ATGAA 3 cut(s) 231, 316, 470
XagI CCTNNNNNAGG 1 cut(s) 380
XapI RAATTY 3 cut(s) 114, 175, 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.