Rmu_sc0011915.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011915.1
OG0016201
Physical Location & Seq
Forward (+)
24531 .. 25022
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011915.1_g000008.1.cds

Sequence Viewer

Length: 492 bp
atggatgaggcggagtcagaaccgccgccgccgtcactaccaccactatcaaaccttattctctcccttgaacaagcaaccctcatggccaagcagctcccttccacctccgacccaactcacctcctccacatccactcctccctccaccaagcccaccaccacctctccaccttcctctccacaacccacatcccccagccgcctcccgccgccgagaactccctctcctccgccaccggcaacgatccgatggacttcggcggcgatgaggagaattccaagagcacaattgagagggtggaggagcagatgaggggctgcttcattaagaataagagggggagaaagaggcagctttcgccttctgcggcggccgtggcggaggagagacggctcaatggtgatgggcttgtggggaatgtggtgggttttgatcctcatgaaaccaggtcgagggcattggagctcgtgtaccagtttcatttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.88

Weight (kDa)

5.76

Isoelectric Point (pI)

63.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01840
malus_domestica MD07G1128600.v1.1
prunus_persica Prupe.2G154500_v2.0.a1
pyrus_communis pycom01g07660 pycom01g07700 pycom07g12440
rosa_chinensis RchiOBHm_Chr1g0352211
rosa_laevigata RLG00000028347
rosa_multiflora Rmu_sc0011915.1_g000008
rosa_roxburghii Rroxscaffold_4G00303080
rosa_rugosa Rorug01G0226100
rosa_samantha Rh1AG240400 Rh1BG211300 Rh1DG237800
rosa_wichuraiana Rw1G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 242, 431
AcoI YGGCCR 2 cut(s) 87, 375
AcsI RAATTY 1 cut(s) 277
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 456
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 1 cut(s) 449
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 97, 358, 469
AluI AGCT 3 cut(s) 97, 358, 469
Alw21I GWGCWC 2 cut(s) 290, 471
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 2 cut(s) 242, 431
AoxI GGCC 2 cut(s) 87, 375
ApeKI GCWGC 3 cut(s) 94, 321, 355
ApoI RAATTY 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 113, 416
BalI TGGCCA 1 cut(s) 89
BanII GRGCYC 1 cut(s) 471
BauI CACGAG 1 cut(s) 470
Bbv12I GWGCWC 2 cut(s) 290, 471
BbvI GCAGC 3 cut(s) 106, 308, 367
BccI CCATC 2 cut(s) 247, 401
BceAI ACGGC 3 cut(s) 16, 362, 410
BciT130I CCWGG 1 cut(s) 451
BcoDI GTCTC 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 451
BmrFI CCNGG 1 cut(s) 451
BsaJI CCNNGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 8 cut(s) 122, 152, 152, 182, 212, 242, 458, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 478
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 3 cut(s) 10, 132, 192
BseLI CCNNNNNNNGG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 6 cut(s) 116, 130, 220, 287, 320, 401
BseX3I CGGCCG 1 cut(s) 375
BseXI GCAGC 3 cut(s) 106, 308, 367
BseYI CCCAGC 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 89, 377
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 290, 471
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 1 cut(s) 385
BsmBI CGTCTC 1 cut(s) 385
BsnI GGCC 2 cut(s) 89, 377
Bsp1286I GDGCHC 2 cut(s) 290, 471
Bsp143I GATC 2 cut(s) 247, 436
BspANI GGCC 2 cut(s) 89, 377
BspHI TCATGA 1 cut(s) 442
BspPI GGATC 2 cut(s) 242, 431
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 2 cut(s) 247, 436
BssSI CACGAG 1 cut(s) 470
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 451
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 10, 132, 192
BstKTI GATC 2 cut(s) 250, 439
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 247, 436
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 2 cut(s) 361, 380
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 449
BstV1I GCAGC 3 cut(s) 106, 308, 367
BstZI CGGCCG 1 cut(s) 375
BsuRI GGCC 2 cut(s) 89, 377
BtgI CCRYGG 1 cut(s) 378
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 3 cut(s) 10, 132, 192
CciI TCATGA 1 cut(s) 442
Cfr10I RCCGGY 1 cut(s) 239
CsiI ACCWGGT 1 cut(s) 449
Csp6I GTAC 1 cut(s) 475
CviAII CATG 2 cut(s) 85, 443
CviQI GTAC 1 cut(s) 475
DpnI GATC 2 cut(s) 249, 438
DpnII GATC 2 cut(s) 247, 436
EaeI YGGCCR 2 cut(s) 87, 375
EagI CGGCCG 1 cut(s) 375
EciI GGCGGA 3 cut(s) 26, 223, 398
Ecl136II GAGCTC 1 cut(s) 469
EclXI CGGCCG 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 471
Eco52I CGGCCG 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 449
EcoT38I GRGCYC 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 2 cut(s) 88, 446
FaiI YATR 2 cut(s) 86, 444
FatI CATG 2 cut(s) 84, 442
FauI CCCGC 1 cut(s) 217
FokI GGATG 3 cut(s) 17, 119, 179
FriOI GRGCYC 1 cut(s) 471
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 2 cut(s) 89, 377
HapII CCGG 1 cut(s) 240
Hin1II CATG 2 cut(s) 88, 446
HinfI GANTC 1 cut(s) 14
HpaII CCGG 1 cut(s) 240
HphI GGTGA 2 cut(s) 113, 416
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 19, 112, 252
Hpy188III TCNNGA 1 cut(s) 443
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 3 cut(s) 111, 184, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 380
Hsp92II CATG 2 cut(s) 88, 446
Kzo9I GATC 2 cut(s) 247, 436
LmnI GCTCC 3 cut(s) 102, 307, 466
LpnPI CCDG 4 cut(s) 212, 253, 436, 463
Lsp1109I GCAGC 3 cut(s) 106, 308, 367
MabI ACCWGGT 1 cut(s) 449
MaeIII GTNAC 1 cut(s) 33
MalI GATC 2 cut(s) 249, 438
MboI GATC 2 cut(s) 247, 436
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 2 cut(s) 290, 471
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 2 cut(s) 277, 291
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 135
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 330
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 451
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 451
MwoI GCNNNNNNNGC 2 cut(s) 361, 380
NdeII GATC 2 cut(s) 247, 436
NlaIII CATG 2 cut(s) 88, 446
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 33
PagI TCATGA 1 cut(s) 442
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 1 cut(s) 449
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SacI GAGCTC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 2 cut(s) 247, 436
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 2 cut(s) 290, 471
SetI ASST 9 cut(s) 57, 99, 110, 126, 168, 176, 360, 455, 471
SexAI ACCWGGT 1 cut(s) 449
Sse9I AATT 2 cut(s) 277, 291
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 1 cut(s) 449
TaqI TCGA 1 cut(s) 455
TasI AATT 2 cut(s) 277, 291
TauI GCSGC 7 cut(s) 28, 31, 205, 215, 267, 374, 377
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 1 cut(s) 33
TseI GCWGC 3 cut(s) 94, 321, 355
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 3 cut(s) 316, 459, 473
XapI RAATTY 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.