Rw1G020830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016201
Physical Location & Seq
Reverse (-)
44593978 .. 44594487
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020830.1

Sequence Viewer

Length: 510 bp
ATGGACTCCATGGAAGAGGCGGAGTCAGAAGCACCGCCGCCGCCGCCGCCGTCACTACCACCACTTTCAAACCTTATTCTCTCCCTTGAACAAGCAACCCTCATGGCCAAGCAGCTCCCTTCCACCTCCGACCCAACTCACCTCCTCCACATCAACTCCTCCCTCCGCCAAGCCCACCACTACCTCTCCACCTTCCTCTCCACAACCCACATCCCCCAGCCGCCTCCCGCCGCCGAGAACTCCCTCTCCTCCGCCACCGGCAACGATCCGATGGACTTCGGCGGCGATGAGGAGAATTCCAAGAGCACAATTGAGAGGGTGGAGGAGCAGATGAGGGGCTGCTTCATTAAGAATAAGAGGGGGAGGAAGAGGCAGCTTTCGCCTTCTGCGGCGGCCGTGGCGGAGGAGAGACGGCTCAATGGTGATGGGCTTGTGGGGAATGTGGTGGGTTTTGATCCTCATGAAACCAGGTCGAGGGCATTGGAGCTCGTGTACCAGTTTCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.52

Weight (kDa)

5.45

Isoelectric Point (pI)

71.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01840
malus_domestica MD07G1128600.v1.1
prunus_persica Prupe.2G154500_v2.0.a1
pyrus_communis pycom01g07660 pycom01g07700 pycom07g12440
rosa_chinensis RchiOBHm_Chr1g0352211
rosa_laevigata RLG00000028347
rosa_multiflora Rmu_sc0011915.1_g000008
rosa_roxburghii Rroxscaffold_4G00303080
rosa_rugosa Rorug01G0226100
rosa_samantha Rh1AG240400 Rh1BG211300 Rh1DG237800
rosa_wichuraiana Rw1G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 260, 449
AcoI YGGCCR 2 cut(s) 105, 393
AcsI RAATTY 1 cut(s) 295
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 1 cut(s) 474
AgsI TTSAA 2 cut(s) 69, 89
AjnI CCWGG 1 cut(s) 467
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 3 cut(s) 115, 376, 487
AluI AGCT 3 cut(s) 115, 376, 487
Alw21I GWGCWC 2 cut(s) 308, 489
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 2 cut(s) 260, 449
AoxI GGCC 2 cut(s) 105, 393
ApeKI GCWGC 3 cut(s) 112, 339, 373
ApoI RAATTY 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 131, 434
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 489
BauI CACGAG 1 cut(s) 488
Bbv12I GWGCWC 2 cut(s) 308, 489
BbvI GCAGC 3 cut(s) 124, 326, 385
BccI CCATC 2 cut(s) 265, 419
BceAI ACGGC 3 cut(s) 34, 380, 428
BciT130I CCWGG 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 469
BmrFI CCNGG 1 cut(s) 469
BsaJI CCNNGG 2 cut(s) 9, 396
BsaXI ACNNNNNCTCC 8 cut(s) 140, 170, 170, 200, 230, 260, 476, 506
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 496
BseBI CCWGG 1 cut(s) 469
BseDI CCNNGG 2 cut(s) 9, 396
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 6 cut(s) 134, 148, 238, 305, 338, 419
BseX3I CGGCCG 1 cut(s) 393
BseXI GCAGC 3 cut(s) 124, 326, 385
BseYI CCCAGC 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 2 cut(s) 107, 395
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 308, 489
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 1 cut(s) 403
BsmBI CGTCTC 1 cut(s) 403
BsnI GGCC 2 cut(s) 107, 395
Bsp1286I GDGCHC 2 cut(s) 308, 489
Bsp143I GATC 2 cut(s) 265, 454
Bsp19I CCATGG 1 cut(s) 9
BspANI GGCC 2 cut(s) 107, 395
BspHI TCATGA 1 cut(s) 460
BspPI GGATC 2 cut(s) 260, 449
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 9, 396
BssMI GATC 2 cut(s) 265, 454
BssSI CACGAG 1 cut(s) 488
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 469
Bst6I CTCTTC 2 cut(s) 9, 362
BstDSI CCRYGG 2 cut(s) 9, 396
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 2 cut(s) 268, 457
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 2 cut(s) 265, 454
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 4 cut(s) 43, 46, 379, 398
BstNI CCWGG 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 467
BstV1I GCAGC 3 cut(s) 124, 326, 385
BstZI CGGCCG 1 cut(s) 393
BsuRI GGCC 2 cut(s) 107, 395
BtgI CCRYGG 2 cut(s) 9, 396
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 210
CciI TCATGA 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 467
Csp6I GTAC 1 cut(s) 493
CviAII CATG 3 cut(s) 10, 103, 461
CviQI GTAC 1 cut(s) 493
DpnI GATC 2 cut(s) 267, 456
DpnII GATC 2 cut(s) 265, 454
EaeI YGGCCR 2 cut(s) 105, 393
EagI CGGCCG 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 9, 362
EarI CTCTTC 2 cut(s) 9, 362
EciI GGCGGA 4 cut(s) 35, 155, 241, 416
Ecl136II GAGCTC 1 cut(s) 487
EclXI CGGCCG 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 489
Eco52I CGGCCG 1 cut(s) 393
Eco53kI GAGCTC 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 487
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 3 cut(s) 13, 106, 464
FaiI YATR 3 cut(s) 11, 104, 462
FatI CATG 3 cut(s) 9, 102, 460
FauI CCCGC 1 cut(s) 235
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 489
GsaI CCCAGC 1 cut(s) 220
HaeIII GGCC 2 cut(s) 107, 395
HapII CCGG 1 cut(s) 258
Hin1II CATG 3 cut(s) 13, 106, 464
HinfI GANTC 2 cut(s) 5, 23
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 131, 434
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 3 cut(s) 28, 130, 270
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 1 cut(s) 493
HpyAV CCTTC 3 cut(s) 129, 202, 393
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 46, 379, 398
Hsp92II CATG 3 cut(s) 13, 106, 464
Kzo9I GATC 2 cut(s) 265, 454
LmnI GCTCC 3 cut(s) 120, 325, 484
LpnPI CCDG 4 cut(s) 230, 271, 454, 481
Lsp1109I GCAGC 3 cut(s) 124, 326, 385
MabI ACCWGGT 1 cut(s) 467
MaeIII GTNAC 1 cut(s) 51
MalI GATC 2 cut(s) 267, 456
MboI GATC 2 cut(s) 265, 454
MboII GAAGA 2 cut(s) 26, 379
MfeI CAATTG 1 cut(s) 309
MhlI GDGCHC 2 cut(s) 308, 489
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 2 cut(s) 295, 309
MluNI TGGCCA 1 cut(s) 107
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 153
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
MseI TTAA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 469
MunI CAATTG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 469
MwoI GCNNNNNNNGC 4 cut(s) 43, 46, 379, 398
NcoI CCATGG 1 cut(s) 9
NdeII GATC 2 cut(s) 265, 454
NlaIII CATG 3 cut(s) 13, 106, 464
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 51
PagI TCATGA 1 cut(s) 460
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 1 cut(s) 467
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SacI GAGCTC 1 cut(s) 489
SaqAI TTAA 1 cut(s) 348
Sau3AI GATC 2 cut(s) 265, 454
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 469
SduI GDGCHC 2 cut(s) 308, 489
SetI ASST 9 cut(s) 75, 117, 128, 144, 186, 194, 378, 473, 489
SexAI ACCWGGT 1 cut(s) 467
Sse9I AATT 2 cut(s) 295, 309
SstI GAGCTC 1 cut(s) 489
StyD4I CCNGG 1 cut(s) 467
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 1 cut(s) 473
TasI AATT 2 cut(s) 295, 309
TauI GCSGC 9 cut(s) 40, 43, 46, 49, 223, 233, 285, 392, 395
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 3 cut(s) 112, 339, 373
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 3 cut(s) 334, 477, 491
XapI RAATTY 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.