RchiOBHm_Chr1g0352211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016201
Physical Location & Seq
Reverse (-)
45445007 .. 45445793
787 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57795

Sequence Viewer

Length: 507 bp
ATGGACTCCATGGATGAGGCGGAGTCAGAACCGCCGCCGCCGCTGTCGTCACTACCACCACTATCAAACCTTATTCTCTCCCTTGAACAAGCAACCCTCATGGCCAAGCAGCTCCCTTCCACCTCCGACCCAACTCGCCTCCTCCACATCAACTCCTCCCTCCACCAAGCCCACCACCACCTCTCCACCTTCCTCTCCACAACCCACTTCCCCCAGCCGCCTCCCGCCGCGGAGAACTCCCTCTCCTCCGCCACTGGCAACGATCCGATGGACTTCGGCGGCGATGAGGAGAATTCCAAGAGCACAATTGAGAGGGTGGAGGAGCAGATGAGGGGCTGCTTCATTAAGAATAAGAGGGGGAGGAAGAGGCAGCTTTCGCCTTCTGCGGCGGCCGTGGCGGAGGAGAGACGGCTCAACGGTGATGGGCTTGTGGGCAATGTGGTGGGCTTTGATCCTCATGAAACTAGGTCGAGGGCATTGGAGCTTGTGTACCAGTTTCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.45

Weight (kDa)

5.56

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01840
malus_domestica MD07G1128600.v1.1
prunus_persica Prupe.2G154500_v2.0.a1
pyrus_communis pycom01g07660 pycom01g07700 pycom07g12440
rosa_chinensis RchiOBHm_Chr1g0352211
rosa_laevigata RLG00000028347
rosa_multiflora Rmu_sc0011915.1_g000008
rosa_roxburghii Rroxscaffold_4G00303080
rosa_rugosa Rorug01G0226100
rosa_samantha Rh1AG240400 Rh1BG211300 Rh1DG237800
rosa_wichuraiana Rw1G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 230
AclWI GGATC 2 cut(s) 257, 446
AcoI YGGCCR 2 cut(s) 102, 390
AcsI RAATTY 1 cut(s) 292
AfaI GTAC 1 cut(s) 491
AgsI TTSAA 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 3 cut(s) 112, 373, 484
AluI AGCT 3 cut(s) 112, 373, 484
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 2 cut(s) 257, 446
AoxI GGCC 2 cut(s) 102, 390
ApeKI GCWGC 3 cut(s) 109, 336, 370
ApoI RAATTY 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 431
BalI TGGCCA 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 3 cut(s) 121, 323, 382
BccI CCATC 2 cut(s) 262, 416
BceAI ACGGC 2 cut(s) 377, 425
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 1 cut(s) 465
BsaJI CCNNGG 3 cut(s) 9, 228, 393
BsaXI ACNNNNNCTCC 8 cut(s) 137, 167, 167, 197, 227, 257, 473, 503
Bse1I ACTGG 2 cut(s) 259, 493
Bse3DI GCAATG 1 cut(s) 442
BseDI CCNNGG 3 cut(s) 9, 228, 393
BseGI GGATG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 442
BseNI ACTGG 2 cut(s) 259, 493
BseRI GAGGAG 6 cut(s) 131, 145, 235, 302, 335, 416
BseX3I CGGCCG 1 cut(s) 390
BseXI GCAGC 3 cut(s) 121, 323, 382
BseYI CCCAGC 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 2 cut(s) 104, 392
BsiEI CGRYCG 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 400
BsmBI CGTCTC 1 cut(s) 400
BsnI GGCC 2 cut(s) 104, 392
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 2 cut(s) 262, 451
Bsp19I CCATGG 1 cut(s) 9
BspANI GGCC 2 cut(s) 104, 392
BspFNI CGCG 1 cut(s) 230
BspHI TCATGA 1 cut(s) 457
BspPI GGATC 2 cut(s) 257, 446
BsrDI GCAATG 1 cut(s) 442
BsrI ACTGG 2 cut(s) 259, 493
BssECI CCNNGG 3 cut(s) 9, 228, 393
BssMI GATC 2 cut(s) 262, 451
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 1 cut(s) 359
BstDSI CCRYGG 3 cut(s) 9, 228, 393
BstF5I GGATG 1 cut(s) 19
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 2 cut(s) 265, 454
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 2 cut(s) 262, 451
BstMCI CGRYCG 1 cut(s) 393
BstMWI GCNNNNNNNGC 3 cut(s) 40, 376, 395
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 121, 323, 382
BstZI CGGCCG 1 cut(s) 390
BsuRI GGCC 2 cut(s) 104, 392
BtgI CCRYGG 3 cut(s) 9, 228, 393
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 252
CciI TCATGA 1 cut(s) 457
Cfr42I CCGCGG 1 cut(s) 231
Csp6I GTAC 1 cut(s) 490
CviAII CATG 3 cut(s) 10, 100, 458
CviQI GTAC 1 cut(s) 490
DpnI GATC 2 cut(s) 264, 453
DpnII GATC 2 cut(s) 262, 451
EaeI YGGCCR 2 cut(s) 102, 390
EagI CGGCCG 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
EciI GGCGGA 3 cut(s) 35, 238, 413
EclXI CGGCCG 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 9
Eco52I CGGCCG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 3 cut(s) 13, 103, 461
FaiI YATR 3 cut(s) 11, 101, 459
FatI CATG 3 cut(s) 9, 99, 457
FauI CCCGC 1 cut(s) 232
FokI GGATG 1 cut(s) 26
FspBI CTAG 1 cut(s) 465
GsaI CCCAGC 1 cut(s) 217
HaeIII GGCC 2 cut(s) 104, 392
Hin1II CATG 3 cut(s) 13, 103, 461
HinfI GANTC 2 cut(s) 5, 23
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 3 cut(s) 28, 127, 267
Hpy188III TCNNGA 1 cut(s) 458
Hpy8I GTNNAC 1 cut(s) 490
HpyAV CCTTC 3 cut(s) 126, 199, 390
HpyCH4III ACNGT 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 376, 395
Hsp92II CATG 3 cut(s) 13, 103, 461
KspI CCGCGG 1 cut(s) 231
Kzo9I GATC 2 cut(s) 262, 451
LmnI GCTCC 3 cut(s) 117, 322, 481
LpnPI CCDG 2 cut(s) 227, 240
Lsp1109I GCAGC 3 cut(s) 121, 323, 382
MaeI CTAG 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 48
MalI GATC 2 cut(s) 264, 453
MboI GATC 2 cut(s) 262, 451
MboII GAAGA 1 cut(s) 376
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 305
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 2 cut(s) 292, 306
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 150
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
MseI TTAA 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 43, 230
MunI CAATTG 1 cut(s) 306
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 3 cut(s) 40, 376, 395
NcoI CCATGG 1 cut(s) 9
NdeII GATC 2 cut(s) 262, 451
NlaIII CATG 3 cut(s) 13, 103, 461
NmuCI GTSAC 1 cut(s) 48
PagI TCATGA 1 cut(s) 457
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 213
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
SacII CCGCGG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 345
Sau3AI GATC 2 cut(s) 262, 451
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 305
SetI ASST 8 cut(s) 72, 114, 125, 183, 191, 375, 470, 486
Sfr303I CCGCGG 1 cut(s) 231
SgrBI CCGCGG 1 cut(s) 231
Sse9I AATT 2 cut(s) 292, 306
SspMI CTAG 1 cut(s) 465
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 419
TaqI TCGA 1 cut(s) 470
TasI AATT 2 cut(s) 292, 306
TauI GCSGC 8 cut(s) 37, 40, 43, 220, 230, 282, 389, 392
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 3 cut(s) 109, 336, 370
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 331, 474, 488
TspRI CASTG 1 cut(s) 259
XapI RAATTY 1 cut(s) 292
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.