pycom01g07660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016201
Physical Location & Seq
Forward (+)
8611379 .. 8611570
192 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07660.1

Sequence Viewer

Length: 192 bp
ATGGTTGAGGAGCAGATGAGGGATTGCTTCATCAAGAACAAGCGGCCCAAAAGGCGGCTTTCTCCTTCTGCGGCCGCCCTGGCGGAGGAGAGGCGGCTTAACGGTGATGGGTTTTTGGGGAGTGTGAAGAGTTTTGACCCTCAGGGCTCAAAGGAGAGGGCTTTGGAGCTTGTGTACCAGTTTCATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.2

Weight (kDa)

9.42

Isoelectric Point (pI)

64.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01840
malus_domestica MD07G1128600.v1.1
prunus_persica Prupe.2G154500_v2.0.a1
pyrus_communis pycom01g07660 pycom01g07700 pycom07g12440
rosa_chinensis RchiOBHm_Chr1g0352211
rosa_laevigata RLG00000028347
rosa_multiflora Rmu_sc0011915.1_g000008
rosa_roxburghii Rroxscaffold_4G00303080
rosa_rugosa Rorug01G0226100
rosa_samantha Rh1AG240400 Rh1BG211300 Rh1DG237800
rosa_wichuraiana Rw1G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 43, 55, 71, 75, 83, 94
AcoI YGGCCR 1 cut(s) 72
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 54, 85
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AoxI GGCC 2 cut(s) 44, 72
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 116
AxyI CCTNAGG 1 cut(s) 141
BanII GRGCYC 1 cut(s) 149
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 80
BglI GCCNNNNNGGC 2 cut(s) 52, 80
BisI GCNGC 5 cut(s) 44, 56, 72, 75, 95
BlsI GCNGC 5 cut(s) 45, 57, 73, 76, 96
Bme1390I CCNGG 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 85
Bse1I ACTGG 1 cut(s) 178
Bse21I CCTNAGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 54, 85
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 2 cut(s) 23, 101
BseX3I CGGCCG 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 46, 74
BsiEI CGRYCG 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 54, 85
BsnI GGCC 2 cut(s) 46, 74
Bsp1286I GDGCHC 1 cut(s) 149
BspACI CCGC 6 cut(s) 43, 55, 71, 75, 83, 94
BspANI GGCC 2 cut(s) 46, 74
BspCNI CTCAG 1 cut(s) 154
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 141
BstENI CCTNNNNNAGG 1 cut(s) 83
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 52, 80
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 185
BstZI CGGCCG 1 cut(s) 72
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 46, 74
CciNI GCGGCCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 185
CviJI RGCY 7 cut(s) 46, 58, 74, 97, 147, 161, 169
CviKI_1 RGCY 7 cut(s) 46, 58, 74, 97, 147, 161, 169
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 72
EagI CGGCCG 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 1 cut(s) 98
EclXI CGGCCG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 149
Eco52I CGGCCG 1 cut(s) 72
Eco81I CCTNAGG 1 cut(s) 141
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 149
FaeI CATG 1 cut(s) 188
FaiI YATR 1 cut(s) 186
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 5 cut(s) 44, 56, 72, 75, 95
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 5 cut(s) 44, 56, 72, 75, 95
GluI GCNGC 5 cut(s) 44, 56, 72, 75, 95
HaeIII GGCC 2 cut(s) 46, 74
Hin1II CATG 1 cut(s) 188
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 80
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 1 cut(s) 188
LmnI GCTCC 2 cut(s) 10, 166
LpnPI CCDG 3 cut(s) 65, 92, 128
MboII GAAGA 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 149
MnlI CCTC 5 cut(s) 12, 79, 84, 150, 150
MseI TTAA 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 52, 80
NlaIII CATG 1 cut(s) 188
NotI GCGGCCGC 1 cut(s) 72
PkrI GCNGC 5 cut(s) 45, 57, 73, 76, 96
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspPI GGNCC 1 cut(s) 45
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 5 cut(s) 44, 56, 72, 75, 95
Sau96I GGNCC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 149
SetI ASST 1 cut(s) 171
SgeI CNNG 6 cut(s) 46, 52, 91, 92, 155, 182
SsiI CCGC 6 cut(s) 43, 55, 71, 75, 83, 94
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 104
TauI GCSGC 5 cut(s) 46, 58, 74, 77, 97
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 19, 173
XagI CCTNNNNNAGG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.