Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004718

Physical Location & Seq

Genomic Coordinates Forward (+)

32511498 .. 32513200

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0226100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGAGTCGATCTCAATTCGAATTGGAGAAGGAGACACCTTCTTGTACTCCCAATAAAAAGGAAGGCTCCGTCGCTTGGCTCTATACCCCTTCTCCTACGCGCAGAATCTGAAATTGCTCCCTTGTGCGCAGAAATTGGATTGAGCACTTGGTGTGACAAATTGGACGAGCGACTGGTGTGCAGTGTTAACGCGATCCAATTCAATTTGTGCTCTTTGGACATTCCTCCACAATCAAAGCTCCAGAAAGCTTCTGTATATGCAGGCTTAATTGAGTCTCCATCGCAAAACCCCGCAGCCCACTTTCAGAGAGAATTGTATTTCTTTTTGGAAGTGGTGGTGGAAAAATTTTGCTACGGTGGAAAGAGAAAAGCAAGGCAGCAACGAAAACTTTTTATGTGGCGTCTTGTGCAAATTCTTAGCATTAGAAATCGGCCGCTCATGAATGATCCTATGTTCCAGCGCTGGAAATTGCAGCAGCCAAGTGCATTAAGACTCCGACCTTTCATGAACGACCATATATGTCTTAAGAACAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008649 GO:0008757 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016422 GO:0016433 GO:0016556 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0080009 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

180

Amino Acids

20.87

Weight (kDa)

9.94

Isoelectric Point (pI)

60.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01860 AT1G01860 AT1G01860 AT1G01860 AT1G01860
fragaria_vesca	FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110
malus_domestica	MD07G1128700.v1.1
prunus_persica	Prupe.2G154300_v2.0.a1 Prupe.2G154300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352201
rosa_laevigata	RLG00000028348
rosa_multiflora	Rmu_sc0011915.1_g000009
rosa_roxburghii	Rroxscaffold_4G00303070
rosa_rugosa	Rorug01G0226100 Rorug01G0226100
rosa_samantha	Rh1AG240300 Rh1BG211200 Rh1CG224300 Rh1DG237700
rosa_wichuraiana	Rw1G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	130
AccBSI	CCGCTC	1 cut(s)	439
AccII	CGCG	2 cut(s)	102, 194
AciI	CCGC	2 cut(s)	294, 437
AclWI	GGATC	2 cut(s)	190, 443
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	347, 414
AcyI	GRCGYC	1 cut(s)	403
AdeI	CACNNNGTG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	48
AfeI	AGCGCT	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	2 cut(s)	241, 251
AluI	AGCT	2 cut(s)	241, 251
Alw21I	GWGCWC	2 cut(s)	149, 215
Alw26I	GTCTC	2 cut(s)	28, 282
AlwI	GGATC	2 cut(s)	190, 443
AlwNI	CAGNNNCTG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	464
AoxI	GGCC	1 cut(s)	434
ApeKI	GCWGC	4 cut(s)	296, 379, 475, 478
ApoI	RAATTY	2 cut(s)	347, 414
AspLEI	GCGC	3 cut(s)	104, 131, 465
AsuII	TTCGAA	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	149, 215
BbvI	GCAGC	4 cut(s)	308, 391, 487, 490
BccI	CCATC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BcoDI	GTCTC	2 cut(s)	28, 282
BfoI	RGCGCY	1 cut(s)	466
BfrI	CTTAAG	1 cut(s)	527
BisI	GCNGC	5 cut(s)	297, 380, 437, 476, 479
BlsI	GCNGC	5 cut(s)	298, 381, 438, 477, 480
BmiI	GGNNCC	1 cut(s)	69
BplI	GAGNNNNNCTC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	434
BseXI	GCAGC	4 cut(s)	308, 391, 487, 490
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	2 cut(s)	102, 194
Bsh1285I	CGRYCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	436
BsiEI	CGRYCG	1 cut(s)	437
BsiHKAI	GWGCWC	2 cut(s)	149, 215
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	28, 282
BsnI	GGCC	1 cut(s)	436
Bsp119I	TTCGAA	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	149, 215
Bsp143I	GATC	3 cut(s)	10, 195, 448
BspACI	CCGC	2 cut(s)	294, 437
BspANI	GGCC	1 cut(s)	436
BspFNI	CGCG	2 cut(s)	102, 194
BspHI	TCATGA	2 cut(s)	441, 507
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	190, 443
BspT104I	TTCGAA	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	10, 195, 448
BssNI	GRCGYC	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	359
BstACI	GRCGYC	1 cut(s)	403
BstAFI	CTTAAG	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	419, 540
BstFNI	CGCG	2 cut(s)	102, 194
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	3 cut(s)	104, 131, 465
BstKTI	GATC	3 cut(s)	13, 198, 451
BstMAI	GTCTC	2 cut(s)	28, 282
BstMBI	GATC	3 cut(s)	10, 195, 448
BstMCI	CGRYCG	1 cut(s)	437
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstUI	CGCG	2 cut(s)	102, 194
BstV1I	GCAGC	4 cut(s)	308, 391, 487, 490
BstZI	CGGCCG	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	436
BtgZI	GCGATG	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	110
CciI	TCATGA	2 cut(s)	441, 507
CfoI	GCGC	3 cut(s)	104, 131, 465
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	442, 508
CviJI	RGCY	8 cut(s)	68, 81, 241, 251, 267, 299, 436, 481
CviKI_1	RGCY	8 cut(s)	68, 81, 241, 251, 267, 299, 436, 481
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	2 cut(s)	419, 540
DpnI	GATC	3 cut(s)	12, 197, 450
DpnII	GATC	3 cut(s)	10, 195, 448
DraIII	CACNNNGTG	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	434
EagI	CGGCCG	1 cut(s)	434
EclXI	CGGCCG	1 cut(s)	434
Eco47III	AGCGCT	1 cut(s)	464
Eco52I	CGGCCG	1 cut(s)	434
FaeI	CATG	2 cut(s)	445, 511
FatI	CATG	2 cut(s)	441, 507
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	297, 380, 437, 476, 479
Fsp4HI	GCNGC	5 cut(s)	297, 380, 437, 476, 479
FspI	TGCGCA	1 cut(s)	130
GlaI	GCGC	3 cut(s)	103, 130, 464
GluI	GCNGC	5 cut(s)	297, 380, 437, 476, 479
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	436
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	3 cut(s)	104, 131, 465
Hin1I	GRCGYC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	445, 511
Hin6I	GCGC	3 cut(s)	102, 129, 463
HinP1I	GCGC	3 cut(s)	102, 129, 463
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	4 cut(s)	6, 107, 275, 495
HpaI	GTTAAC	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	112, 309, 500
Hpy188III	TCNNGA	3 cut(s)	244, 442, 508
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	4 cut(s)	24, 50, 58, 101
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	5 cut(s)	183, 263, 412, 475, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	2 cut(s)	419, 540
Hsp92I	GRCGYC	1 cut(s)	403
Hsp92II	CATG	2 cut(s)	445, 511
HspAI	GCGC	3 cut(s)	102, 129, 463
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	10, 195, 448
LmnI	GCTCC	3 cut(s)	73, 124, 246
LpnPI	CCDG	5 cut(s)	161, 249, 257, 451, 473
Lsp1109I	GCAGC	4 cut(s)	308, 391, 487, 490
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	3 cut(s)	12, 197, 450
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	3 cut(s)	10, 195, 448
MhlI	GDGCHC	2 cut(s)	149, 215
MlyI	GAGTC	3 cut(s)	15, 284, 489
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	1 cut(s)	237
MseI	TTAA	4 cut(s)	189, 269, 491, 528
MspCI	CTTAAG	1 cut(s)	527
MvnI	CGCG	2 cut(s)	102, 194
MwoI	GCNNNNNNNGC	1 cut(s)	409
NdeII	GATC	3 cut(s)	10, 195, 448
NlaIII	CATG	2 cut(s)	445, 511
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	155
NsbI	TGCGCA	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	20
PagI	TCATGA	2 cut(s)	441, 507
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	5 cut(s)	298, 381, 438, 477, 480
PleI	GAGTC	3 cut(s)	14, 283, 489
PpsI	GAGTC	3 cut(s)	14, 283, 489
PspN4I	GGNNCC	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	4 cut(s)	189, 269, 491, 528
SatI	GCNGC	5 cut(s)	297, 380, 437, 476, 479
Sau3AI	GATC	3 cut(s)	10, 195, 448
SchI	GAGTC	3 cut(s)	15, 284, 489
SduI	GDGCHC	2 cut(s)	149, 215
SetI	ASST	4 cut(s)	42, 243, 253, 505
SfuI	TTCGAA	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
SsiI	CCGC	2 cut(s)	294, 437
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	9, 20
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	439
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	4 cut(s)	189, 269, 491, 528
Tru9I	TTAA	4 cut(s)	189, 269, 491, 528
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	4 cut(s)	296, 379, 475, 478
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	458, 496, 524
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	527
XapI	RAATTY	2 cut(s)	347, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.