Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004718

Physical Location & Seq

Genomic Coordinates Reverse (-)

304133 .. 306310

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01860.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGATGAATGCGGTAATAACATCAGCCACCATCAACTGCAACTCTCTGTCGCCGTCATGGACATGCGGAGACAATTCGCCGTCAAAGCTTCTGTTGGGGGAAATATCTGCCGCGTTATCACGACGGAGGACCGTGAAGGTGTCATGCGGCAAGAGCAGCCCAGATGATTACCACTCAACCCTCAAATCACTCAATTCTCGTGGTCGGTTTCCCAGAAAGTCCCTCGGCCAGCATTACATGTTGAATTCGGACATCAACGACCAGCTAGCCTCTGCGGCTGATGTGAAAGAAGGAGATTTTGTATTAGAGATTGGTCCTGGGACTGGTTCTTTAACCAATGTCCTTATCAATTTAGGTGCTACAGTTCTTGCCATCGAAAAGGATCCTCATATGGTTGATTTGGTGAGCGAACGATTTGCTGGTTCTGACAAGTTCAAGGTTTTGCAAGAGGATTTTGTCAAGTGTCACATCCGTTCTCACATGCTCTCCATTTTAGAGACTAGAAGGTTATCACATCCAGATTCTGCTCTTGCAAAGGTTGTTTCCAATTTACCTTTCAATATAAGTACTGATGTTGTGAAGCTTCTACTTCCTATGGGTGATATCTTCTCAAAAGTTGTTCTCTTACTCCAGGACGAGGCAGCATTGCGATTGGTTGAACCAGCACTGCGAACATCTGAATACCGTCCCATCAACATTTTGATCAACTTCTATTCTGAACCGGAATACAATTTCAGAGTTCCTAGGGAAAACTTCTTCCCTCAGCCCAAGGTTGATGCTGCTGTCGTAACATTCAAGCTGAAGCATCCGAGGGACTATCCTGATGTTTCCTCCACCAAAAATTTCTTCTCTTTGGTGAATTCTGCATTCAATGGGAAGAGGAAAATGTTGAGAAAGTCCCTCCAGCACATATCATCATCTCCTGATATCGAAAAAGCACTAGGAGTTGCTGGTCTTCCAGCCACTTCAAGGCCTGAAGAGCTTACCTTGGATGACTTTGTCAAGTTGCATAACGTAATCGCCAGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008649 GO:0008757 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016422 GO:0016433 GO:0016556 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0080009 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

343

Amino Acids

38.02

Weight (kDa)

8.77

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	3 - 231	4e-38	Ribosomal RNA adenine dimethylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01860 AT1G01860 AT1G01860 AT1G01860 AT1G01860
fragaria_vesca	FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110
malus_domestica	MD07G1128700.v1.1
prunus_persica	Prupe.2G154300_v2.0.a1 Prupe.2G154300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352201
rosa_laevigata	RLG00000028348
rosa_multiflora	Rmu_sc0011915.1_g000009
rosa_roxburghii	Rroxscaffold_4G00303070
rosa_rugosa	Rorug01G0226100 Rorug01G0226100
rosa_samantha	Rh1AG240300 Rh1BG211200 Rh1CG224300 Rh1DG237700
rosa_wichuraiana	Rw1G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	5 cut(s)	11, 66, 111, 147, 275
AclWI	GGATC	2 cut(s)	377, 390
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	244, 841, 859
AcuI	CTGAAG	2 cut(s)	821, 996
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	3 cut(s)	323, 637, 969
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	7 cut(s)	244, 436, 559, 659, 796, 871, 969
AjnI	CCWGG	2 cut(s)	316, 630
AjuI	GAANNNNNNNTTGG	4 cut(s)	539, 571, 830, 862
AluBI	AGCT	5 cut(s)	88, 265, 583, 799, 982
AluI	AGCT	5 cut(s)	88, 265, 583, 799, 982
Alw26I	GTCTC	2 cut(s)	63, 491
AlwI	GGATC	2 cut(s)	377, 390
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	226, 971
ApeKI	GCWGC	3 cut(s)	156, 641, 779
ApoI	RAATTY	3 cut(s)	244, 841, 859
AspA2I	CCTAGG	1 cut(s)	743
AspS9I	GGNCC	2 cut(s)	129, 314
AsuHPI	GGTGA	3 cut(s)	415, 611, 868
AsuNHI	GCTAGC	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	129, 314
AvrII	CCTAGG	1 cut(s)	743
BamHI	GGATCC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	947
BbvCI	CCTCAGC	1 cut(s)	762
BbvI	GCAGC	3 cut(s)	168, 653, 766
BccI	CCATC	3 cut(s)	38, 380, 698
BceAI	ACGGC	2 cut(s)	37, 64
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	2 cut(s)	318, 632
BclI	TGATCA	1 cut(s)	702
BcoDI	GTCTC	2 cut(s)	63, 491
BfaI	CTAG	4 cut(s)	266, 501, 744, 941
BfmI	CTRYAG	1 cut(s)	360
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	6 cut(s)	111, 148, 157, 276, 642, 780
BlnI	CCTAGG	1 cut(s)	743
BlsI	GCNGC	6 cut(s)	112, 149, 158, 277, 643, 781
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	2 cut(s)	318, 632
Bme18I	GGWCC	2 cut(s)	129, 314
BmgT120I	GGNCC	2 cut(s)	129, 314
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	318, 632
BmsI	GCATC	2 cut(s)	766, 814
BmtI	GCTAGC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	947
BpmI	CTGGAG	2 cut(s)	614, 887
Bpu10I	CCTNAGC	1 cut(s)	762
BsaJI	CCNNGG	6 cut(s)	223, 317, 743, 768, 809, 987
BsaWI	WCCGGW	1 cut(s)	721
BsaXI	ACNNNNNCTCC	4 cut(s)	285, 315, 470, 500
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 637, 969
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	644
BseBI	CCWGG	2 cut(s)	318, 632
BseDI	CCNNGG	6 cut(s)	223, 317, 743, 768, 809, 987
BseGI	GGATG	4 cut(s)	468, 514, 805, 997
BseLI	CCNNNNNNNGG	3 cut(s)	323, 637, 969
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	1 cut(s)	776
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	3 cut(s)	168, 653, 766
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	2 cut(s)	228, 973
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	5 cut(s)	205, 334, 672, 827, 883
BslI	CCNNNNNNNGG	3 cut(s)	323, 637, 969
BsmAI	GTCTC	2 cut(s)	63, 491
BsmFI	GGGAC	5 cut(s)	205, 334, 672, 827, 883
BsmI	GAATGC	2 cut(s)	13, 866
BsnI	GGCC	2 cut(s)	228, 973
Bsp143I	GATC	2 cut(s)	382, 702
BspACI	CCGC	5 cut(s)	11, 66, 111, 147, 275
BspANI	GGCC	2 cut(s)	228, 973
BspCNI	CTCAG	1 cut(s)	775
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	384
BspOI	GCTAGC	1 cut(s)	269
BspPI	GGATC	2 cut(s)	377, 390
BspQI	GCTCTTC	1 cut(s)	972
BsrDI	GCAATG	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	6 cut(s)	223, 317, 743, 768, 809, 987
BssMI	GATC	2 cut(s)	382, 702
BssSI	CACGAG	1 cut(s)	198
BssT1I	CCWWGG	3 cut(s)	743, 768, 987
Bst2BI	CACGAG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	318, 632
Bst4CI	ACNGT	3 cut(s)	133, 364, 686
Bst6I	CTCTTC	2 cut(s)	872, 972
BstC8I	GCNNGC	2 cut(s)	230, 267
BstDEI	CTNAG	1 cut(s)	762
BstF5I	GGATG	4 cut(s)	468, 514, 805, 997
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	2 cut(s)	385, 705
BstMAI	GTCTC	2 cut(s)	63, 491
BstMBI	GATC	2 cut(s)	382, 702
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 153, 156, 275, 979
BstNI	CCWGG	2 cut(s)	318, 632
BstNSI	RCATGY	3 cut(s)	66, 241, 484
BstSCI	CCNGG	2 cut(s)	316, 630
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	168, 653, 766
BstV2I	GAAGAC	1 cut(s)	947
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	228, 973
BtsCI	GGATG	4 cut(s)	468, 514, 805, 997
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	1 cut(s)	665
Cac8I	GCNNGC	2 cut(s)	230, 267
CaiI	CAGNNNCTG	1 cut(s)	524
Cfr13I	GGNCC	2 cut(s)	129, 314
Csp6I	GTAC	1 cut(s)	567
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	5 cut(s)	57, 63, 144, 238, 481
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	1 cut(s)	762
DpnI	GATC	2 cut(s)	384, 704
DpnII	GATC	2 cut(s)	382, 702
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	872, 972
EarI	CTCTTC	2 cut(s)	872, 972
Eco130I	CCWWGG	3 cut(s)	743, 768, 987
Eco147I	AGGCCT	1 cut(s)	973
Eco32I	GATATC	2 cut(s)	604, 928
Eco47I	GGWCC	2 cut(s)	129, 314
Eco57I	CTGAAG	2 cut(s)	821, 996
EcoRI	GAATTC	2 cut(s)	244, 859
EcoRII	CCWGG	2 cut(s)	316, 630
EcoRV	GATATC	2 cut(s)	604, 928
EcoT14I	CCWWGG	3 cut(s)	743, 768, 987
ErhI	CCWWGG	3 cut(s)	743, 768, 987
FaeI	CATG	5 cut(s)	60, 66, 147, 241, 484
FaqI	GGGAC	5 cut(s)	205, 334, 672, 827, 883
FatI	CATG	5 cut(s)	56, 62, 143, 237, 480
FauNDI	CATATG	1 cut(s)	390
FbaI	TGATCA	1 cut(s)	702
Fnu4HI	GCNGC	6 cut(s)	111, 148, 157, 276, 642, 780
FokI	GGATG	4 cut(s)	455, 501, 792, 1004
Fsp4HI	GCNGC	6 cut(s)	111, 148, 157, 276, 642, 780
FspBI	CTAG	4 cut(s)	266, 501, 744, 941
GluI	GCNGC	6 cut(s)	111, 148, 157, 276, 642, 780
GsuI	CTGGAG	2 cut(s)	614, 887
HaeIII	GGCC	2 cut(s)	228, 973
HapII	CCGG	1 cut(s)	722
Hin1II	CATG	5 cut(s)	60, 66, 147, 241, 484
HindIII	AAGCTT	2 cut(s)	86, 581
HinfI	GANTC	1 cut(s)	521
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	3 cut(s)	415, 611, 868
Hpy188I	TCNGA	6 cut(s)	250, 427, 679, 718, 737, 810
Hpy188III	TCNNGA	4 cut(s)	120, 518, 821, 923
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	3 cut(s)	130, 284, 498
HpyCH4III	ACNGT	3 cut(s)	133, 364, 686
HpyCH4IV	ACGT	1 cut(s)	1014
HpyCH4V	TGCA	5 cut(s)	39, 445, 533, 866, 1009
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 153, 156, 275, 979
HpyF3I	CTNAG	1 cut(s)	762
HpySE526I	ACGT	1 cut(s)	1014
Hsp92II	CATG	5 cut(s)	60, 66, 147, 241, 484
Ksp22I	TGATCA	1 cut(s)	702
Kzo9I	GATC	2 cut(s)	382, 702
LguI	GCTCTTC	1 cut(s)	972
Lsp1109I	GCAGC	3 cut(s)	168, 653, 766
LweI	GCATC	2 cut(s)	766, 814
MaeI	CTAG	4 cut(s)	266, 501, 744, 941
MaeII	ACGT	1 cut(s)	1014
MaeIII	GTNAC	2 cut(s)	464, 787
MalI	GATC	2 cut(s)	384, 704
MboI	GATC	2 cut(s)	382, 702
MboII	GAAGA	6 cut(s)	598, 748, 838, 889, 947, 989
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	8 cut(s)	73, 193, 244, 349, 547, 730, 841, 859
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	61
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	2 cut(s)	318, 632
Mva1269I	GAATGC	2 cut(s)	13, 866
MvaI	CCWGG	2 cut(s)	318, 632
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	5 cut(s)	85, 153, 156, 275, 979
NdeI	CATATG	1 cut(s)	390
NdeII	GATC	2 cut(s)	382, 702
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	5 cut(s)	60, 66, 147, 241, 484
NlaIV	GGNNCC	1 cut(s)	384
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	3 cut(s)	66, 241, 484
PceI	AGGCCT	1 cut(s)	973
PciI	ACATGT	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	972
PctI	GAATGC	2 cut(s)	13, 866
PfeI	GAWTC	1 cut(s)	521
PflFI	GACNNNGTC	1 cut(s)	998
PfoI	TCCNGGA	1 cut(s)	630
PkrI	GCNGC	6 cut(s)	112, 149, 158, 277, 643, 781
PscI	ACATGT	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	316, 630
PspGI	CCWGG	2 cut(s)	316, 630
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	129, 314
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	382
PsyI	GACNNNGTC	1 cut(s)	998
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	972
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	6 cut(s)	111, 148, 157, 276, 642, 780
Sau3AI	GATC	2 cut(s)	382, 702
Sau96I	GGNCC	2 cut(s)	129, 314
ScaI	AGTACT	1 cut(s)	568
ScrFI	CCNGG	2 cut(s)	318, 632
SfaNI	GCATC	2 cut(s)	766, 814
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	2 cut(s)	129, 314
SmiMI	CAYNNNNRTG	1 cut(s)	61
Sse9I	AATT	8 cut(s)	73, 193, 244, 349, 547, 730, 841, 859
SseBI	AGGCCT	1 cut(s)	973
SsiI	CCGC	5 cut(s)	11, 66, 111, 147, 275
SspMI	CTAG	4 cut(s)	266, 501, 744, 941
StuI	AGGCCT	1 cut(s)	973
StyD4I	CCNGG	2 cut(s)	316, 630
StyI	CCWWGG	3 cut(s)	743, 768, 987
TaaI	ACNGT	3 cut(s)	133, 364, 686
TaiI	ACGT	1 cut(s)	1017
TaqI	TCGA	2 cut(s)	375, 930
TasI	AATT	8 cut(s)	73, 193, 244, 349, 547, 730, 841, 859
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	3 cut(s)	113, 150, 278
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	3 cut(s)	156, 641, 779
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	2 cut(s)	139, 461
TspRI	CASTG	1 cut(s)	672
Tth111I	GACNNNGTC	1 cut(s)	998
VpaK11BI	GGWCC	2 cut(s)	129, 314
XapI	RAATTY	3 cut(s)	244, 841, 859
XceI	RCATGY	3 cut(s)	66, 241, 484
XmaJI	CCTAGG	1 cut(s)	743
XspI	CTAG	4 cut(s)	266, 501, 744, 941
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.