Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011915.1

Orthogroup ID

OG0004718

Physical Location & Seq

Genomic Coordinates Reverse (-)

25653 .. 29005

Gene Structure 3353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011915.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atgggcagtggttctcccgtccgacagcaaccccatgacggcgggaggccagaggccatcccaacatccagacgccgccggaagagaacaagaattcaaacgtctcactcctcagtcctcaacccagcaacagagacagacatgaattcagcccctcatcttcttcttcttcagcaatctctcccgccaatatcttccctacaaaacccaaaacccacactgagaccctcactcccggcgcataatagcacccccggcgcacgaaaatccacaccaacttacataacagcttgcgccaaaacaacacgaaaaacaggaggaagaagaaaaaaccctgatgactaccacgccactcttacagctctcaactccaaaggccgcttccccagaaaatcactcggccagcattatatgttggactcagagatcaatgaccagcttgtagctgcggccgaagtcggggaaggtgatgtggtgttggaaattgggccgggaactggttctttgactaatgttcttatcaatgctggtgcaactgtgctcgcaatcgaaaaggatccatacatggctactcttgtaagcgaaagatttgcgcagactggtcagttgaaggttctacaagaggactttgtcaaatgtcatattcattcacacatgtcatcattattgagaagtatagagtcatccggtgcaagttcaagacatgcaaaagtagtcgctaatataccctttaatataagtacagatgtagtgaaacaacttcttccaatgggtgacatcttctctgaagtagttctcttactccaggaggagacagctttccgcttggtggagtcatatctgcggacatctgagtaccggcctatcaatgtctttgtcaatttctattcagatcctgaatttaaatttaaggtccccaggacaaacttctttcctcagcctaatgttgatgctgctgttgttaagtttaggctgaagcaacctacagagtatcccccagtttcctctactaaaagcttcttctcaatggtcaattcagcttttaatgggaaacgcaaaatgttgcggaaatcacttcagcacatatgcacgccctcggagattgaaagtgctttggaaaatgttggtcgacctgccacgtcaagaccagaagagctaaccacggatgattttgtgaagttgcataatttgattgtgaaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008649 GO:0008757 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016422 GO:0016433 GO:0016556 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0080009 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

401

Amino Acids

44.41

Weight (kDa)

9.58

Isoelectric Point (pI)

67.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01860 AT1G01860 AT1G01860 AT1G01860 AT1G01860
fragaria_vesca	FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110
malus_domestica	MD07G1128700.v1.1
prunus_persica	Prupe.2G154300_v2.0.a1 Prupe.2G154300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352201
rosa_laevigata	RLG00000028348
rosa_multiflora	Rmu_sc0011915.1_g000009
rosa_roxburghii	Rroxscaffold_4G00303070
rosa_rugosa	Rorug01G0226100 Rorug01G0226100
rosa_samantha	Rh1AG240300 Rh1BG211200 Rh1CG224300 Rh1DG237700
rosa_wichuraiana	Rw1G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	594
Acc36I	ACCTGC	1 cut(s)	1141
AccI	GTMKAC	1 cut(s)	1129
AciI	CCGC	8 cut(s)	42, 76, 185, 379, 449, 823, 844, 1066
AclWI	GGATC	3 cut(s)	551, 564, 887
AcoI	YGGCCR	2 cut(s)	400, 450
AcsI	RAATTY	4 cut(s)	93, 145, 899, 905
AcuI	CTGAAG	4 cut(s)	155, 807, 995, 1061
AcyI	GRCGYC	1 cut(s)	73
AfaI	GTAC	2 cut(s)	742, 857
AfiI	CCNNNNNNNGG	4 cut(s)	38, 459, 497, 829
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	4 cut(s)	98, 610, 699, 1106
AjiI	CACGTC	1 cut(s)	1140
AjnI	CCWGG	2 cut(s)	804, 917
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	8 cut(s)	290, 362, 439, 446, 818, 1017, 1040, 1156
AluI	AGCT	8 cut(s)	290, 362, 439, 446, 818, 1017, 1040, 1156
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	4 cut(s)	108, 128, 217, 806
AlwI	GGATC	3 cut(s)	551, 564, 887
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	7 cut(s)	47, 54, 376, 400, 450, 488, 860
ApeKI	GCWGC	2 cut(s)	446, 953
ApoI	RAATTY	4 cut(s)	93, 145, 899, 905
Asp700I	GAANNNNTTC	2 cut(s)	499, 792
AspLEI	GCGC	4 cut(s)	241, 260, 296, 595
AspS9I	GGNCC	2 cut(s)	488, 913
AsuC2I	CCSGG	3 cut(s)	236, 255, 492
AsuHPI	GGTGA	2 cut(s)	479, 785
AvaII	GGWCC	1 cut(s)	913
BamHI	GGATCC	1 cut(s)	556
Bbv12I	GWGCWC	1 cut(s)	543
BbvCI	CCTCAGC	1 cut(s)	936
BbvI	GCAGC	2 cut(s)	433, 940
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciT130I	CCWGG	2 cut(s)	806, 919
BciVI	GTATCC	1 cut(s)	1002
BcnI	CCSGG	3 cut(s)	236, 255, 492
BcoDI	GTCTC	4 cut(s)	108, 128, 217, 806
BfmI	CTRYAG	1 cut(s)	984
BfuAI	ACCTGC	1 cut(s)	1141
BfuI	GTATCC	1 cut(s)	1002
BisI	GCNGC	5 cut(s)	76, 379, 447, 450, 954
BlsI	GCNGC	5 cut(s)	77, 380, 448, 451, 955
Bme1390I	CCNGG	5 cut(s)	236, 255, 492, 806, 919
Bme18I	GGWCC	1 cut(s)	913
BmgBI	CACGTC	1 cut(s)	1140
BmgT120I	GGNCC	2 cut(s)	488, 913
BmiI	GGNNCC	2 cut(s)	558, 915
BmrFI	CCNGG	5 cut(s)	236, 255, 492, 806, 919
BmrI	ACTGGG	1 cut(s)	992
BmsI	GCATC	1 cut(s)	940
BmuI	ACTGGG	1 cut(s)	992
BpmI	CTGGAG	1 cut(s)	788
Bpu10I	CCTNAGC	1 cut(s)	936
BpuMI	CCSGG	3 cut(s)	236, 255, 492
BsaHI	GRCGYC	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	4 cut(s)	253, 917, 1095, 1161
BsaWI	WCCGGW	1 cut(s)	686
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 459, 497, 829
Bse118I	RCCGGY	1 cut(s)	858
Bse1I	ACTGG	3 cut(s)	502, 604, 998
BseBI	CCWGG	2 cut(s)	806, 919
BseDI	CCNNGG	4 cut(s)	253, 917, 1095, 1161
BseGI	GGATG	4 cut(s)	57, 65, 683, 1171
BseLI	CCNNNNNNNGG	4 cut(s)	38, 459, 497, 829
BseMII	CTCAG	5 cut(s)	126, 212, 435, 843, 950
BseNI	ACTGG	3 cut(s)	502, 604, 998
BseRI	GAGGAG	2 cut(s)	100, 824
BseX3I	CGGCCG	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	433, 940
BseYI	CCCAGC	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	7 cut(s)	49, 56, 378, 402, 452, 490, 862
BsiEI	CGRYCG	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	543
BsiSI	CCGG	6 cut(s)	79, 236, 255, 491, 687, 859
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	4 cut(s)	38, 459, 497, 829
BsmAI	GTCTC	4 cut(s)	108, 128, 217, 806
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	899
BsnI	GGCC	7 cut(s)	49, 56, 378, 402, 452, 490, 862
Bso31I	GGTCTC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	426, 556, 892
BspACI	CCGC	8 cut(s)	42, 76, 185, 379, 449, 823, 844, 1066
BspANI	GGCC	7 cut(s)	49, 56, 378, 402, 452, 490, 862
BspCNI	CTCAG	5 cut(s)	125, 213, 434, 844, 949
BspLI	GGNNCC	2 cut(s)	558, 915
BspMI	ACCTGC	1 cut(s)	1141
BspPI	GGATC	3 cut(s)	551, 564, 887
BspQI	GCTCTTC	1 cut(s)	1146
BspTNI	GGTCTC	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	858
BsrI	ACTGG	3 cut(s)	502, 604, 998
BssAI	RCCGGY	1 cut(s)	858
BssECI	CCNNGG	4 cut(s)	253, 917, 1095, 1161
BssMI	GATC	3 cut(s)	426, 556, 892
BssNI	GRCGYC	1 cut(s)	73
Bst2UI	CCWGG	2 cut(s)	806, 919
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	2 cut(s)	77, 1146
BstACI	GRCGYC	1 cut(s)	73
BstC8I	GCNNGC	4 cut(s)	292, 404, 543, 1091
BstDEI	CTNAG	5 cut(s)	112, 221, 421, 852, 936
BstDSI	CCRYGG	1 cut(s)	1161
BstF5I	GGATG	4 cut(s)	57, 65, 683, 1171
BstHHI	GCGC	4 cut(s)	241, 260, 296, 595
BstKTI	GATC	3 cut(s)	429, 559, 895
BstMAI	GTCTC	4 cut(s)	108, 128, 217, 806
BstMBI	GATC	3 cut(s)	426, 556, 892
BstMCI	CGRYCG	1 cut(s)	453
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	2 cut(s)	806, 919
BstNSI	RCATGY	2 cut(s)	658, 707
BstSCI	CCNGG	5 cut(s)	234, 253, 490, 804, 917
BstSFI	CTRYAG	1 cut(s)	984
BstV1I	GCAGC	2 cut(s)	433, 940
BstX2I	RGATCY	2 cut(s)	556, 892
BstYI	RGATCY	2 cut(s)	556, 892
BstZI	CGGCCG	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	1002
BsuRI	GGCC	7 cut(s)	49, 56, 378, 402, 452, 490, 862
BtgI	CCRYGG	1 cut(s)	1161
BtrI	CACGTC	1 cut(s)	1140
BtsCI	GGATG	4 cut(s)	57, 65, 683, 1171
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 218
BveI	ACCTGC	1 cut(s)	1141
Cac8I	GCNNGC	4 cut(s)	292, 404, 543, 1091
CaiI	CAGNNNCTG	1 cut(s)	896
CfoI	GCGC	4 cut(s)	241, 260, 296, 595
Cfr10I	RCCGGY	1 cut(s)	858
Cfr13I	GGNCC	2 cut(s)	488, 913
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	741, 856
CviAII	CATG	5 cut(s)	35, 142, 565, 655, 704
CviQI	GTAC	2 cut(s)	741, 856
DdeI	CTNAG	5 cut(s)	112, 221, 421, 852, 936
DpnI	GATC	3 cut(s)	428, 558, 894
DpnII	GATC	3 cut(s)	426, 556, 892
DraI	TTTAAA	1 cut(s)	904
EaeI	YGGCCR	2 cut(s)	400, 450
EagI	CGGCCG	1 cut(s)	450
Eam1104I	CTCTTC	2 cut(s)	77, 1146
EarI	CTCTTC	2 cut(s)	77, 1146
EclXI	CGGCCG	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	913
Eco52I	CGGCCG	1 cut(s)	450
Eco57I	CTGAAG	4 cut(s)	155, 807, 995, 1061
EcoO109I	RGGNCCY	1 cut(s)	913
EcoRI	GAATTC	2 cut(s)	93, 145
EcoRII	CCWGG	2 cut(s)	804, 917
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	5 cut(s)	38, 145, 568, 658, 707
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	5 cut(s)	34, 141, 564, 654, 703
FauI	CCCGC	2 cut(s)	35, 192
FauNDI	CATATG	1 cut(s)	1085
FblI	GTMKAC	1 cut(s)	1129
Fnu4HI	GCNGC	5 cut(s)	76, 379, 447, 450, 954
FokI	GGATG	4 cut(s)	44, 52, 670, 1178
Fsp4HI	GCNGC	5 cut(s)	76, 379, 447, 450, 954
FspI	TGCGCA	1 cut(s)	594
GlaI	GCGC	4 cut(s)	240, 259, 295, 594
GluI	GCNGC	5 cut(s)	76, 379, 447, 450, 954
GsaI	CCCAGC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	7 cut(s)	49, 56, 378, 402, 452, 490, 862
HapII	CCGG	6 cut(s)	79, 236, 255, 491, 687, 859
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	4 cut(s)	241, 260, 296, 595
Hin1I	GRCGYC	1 cut(s)	73
Hin1II	CATG	5 cut(s)	38, 145, 568, 658, 707
Hin6I	GCGC	4 cut(s)	239, 258, 294, 593
HinP1I	GCGC	4 cut(s)	239, 258, 294, 593
HincII	GTYRAC	1 cut(s)	1130
HindII	GTYRAC	1 cut(s)	1130
HindIII	AAGCTT	1 cut(s)	1015
HinfI	GANTC	3 cut(s)	419, 680, 833
HpaII	CCGG	6 cut(s)	79, 236, 255, 491, 687, 859
HphI	GGTGA	2 cut(s)	479, 785
Hpy166II	GTNNAC	1 cut(s)	1130
Hpy188I	TCNGA	6 cut(s)	23, 424, 787, 853, 892, 1099
Hpy188III	TCNNGA	4 cut(s)	69, 699, 896, 1143
Hpy8I	GTNNAC	1 cut(s)	1130
HpyAV	CCTTC	2 cut(s)	458, 604
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	2 cut(s)	101, 1139
HpyCH4V	TGCA	5 cut(s)	533, 692, 707, 1089, 1183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	5 cut(s)	112, 221, 421, 852, 936
HpySE526I	ACGT	2 cut(s)	101, 1139
Hsp92I	GRCGYC	1 cut(s)	73
Hsp92II	CATG	5 cut(s)	38, 145, 568, 658, 707
HspAI	GCGC	4 cut(s)	239, 258, 294, 593
Kzo9I	GATC	3 cut(s)	426, 556, 892
LguI	GCTCTTC	1 cut(s)	1146
Lsp1109I	GCAGC	2 cut(s)	433, 940
LweI	GCATC	1 cut(s)	940
MaeII	ACGT	2 cut(s)	101, 1139
MaeIII	GTNAC	1 cut(s)	773
MalI	GATC	3 cut(s)	428, 558, 894
MboI	GATC	3 cut(s)	426, 556, 892
MflI	RGATCY	2 cut(s)	556, 892
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	8 cut(s)	93, 145, 483, 880, 899, 905, 1033, 1186
MlyI	GAGTC	3 cut(s)	413, 689, 842
MmeI	TCCRAC	3 cut(s)	46, 396, 459
MroXI	GAANNNNTTC	2 cut(s)	499, 792
MseI	TTAA	5 cut(s)	732, 903, 909, 963, 1044
MspI	CCGG	6 cut(s)	79, 236, 255, 491, 687, 859
MspR9I	CCNGG	5 cut(s)	236, 255, 492, 806, 919
MvaI	CCWGG	2 cut(s)	806, 919
MwoI	GCNNNNNNNGC	1 cut(s)	255
NciI	CCSGG	3 cut(s)	236, 255, 492
NdeI	CATATG	1 cut(s)	1085
NdeII	GATC	3 cut(s)	426, 556, 892
NlaIII	CATG	5 cut(s)	38, 145, 568, 658, 707
NlaIV	GGNNCC	2 cut(s)	558, 915
NmeAIII	GCCGAG	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	773
NsbI	TGCGCA	1 cut(s)	594
NspI	RCATGY	2 cut(s)	658, 707
PciI	ACATGT	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	1146
PdmI	GAANNNNTTC	2 cut(s)	499, 792
PflFI	GACNNNGTC	1 cut(s)	629
PfoI	TCCNGGA	1 cut(s)	804
PkrI	GCNGC	5 cut(s)	77, 380, 448, 451, 955
PleI	GAGTC	3 cut(s)	413, 688, 841
PpsI	GAGTC	3 cut(s)	413, 688, 841
PpuMI	RGGWCCY	1 cut(s)	913
PscI	ACATGT	1 cut(s)	654
Psp5II	RGGWCCY	1 cut(s)	913
Psp6I	CCWGG	2 cut(s)	804, 917
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	2 cut(s)	804, 917
PspN4I	GGNNCC	2 cut(s)	558, 915
PspPI	GGNCC	2 cut(s)	488, 913
PspPPI	RGGWCCY	1 cut(s)	913
PstNI	CAGNNNCTG	1 cut(s)	896
PsuI	RGATCY	2 cut(s)	556, 892
PsyI	GACNNNGTC	1 cut(s)	629
RsaI	GTAC	2 cut(s)	742, 857
RsaNI	GTAC	2 cut(s)	741, 856
SalI	GTCGAC	1 cut(s)	1128
SapI	GCTCTTC	1 cut(s)	1146
SaqAI	TTAA	5 cut(s)	732, 903, 909, 963, 1044
SatI	GCNGC	5 cut(s)	76, 379, 447, 450, 954
Sau3AI	GATC	3 cut(s)	426, 556, 892
Sau96I	GGNCC	2 cut(s)	488, 913
SchI	GAGTC	3 cut(s)	413, 689, 842
ScrFI	CCNGG	5 cut(s)	236, 255, 492, 806, 919
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	940
SfcI	CTRYAG	1 cut(s)	984
SinI	GGWCC	1 cut(s)	913
SmiI	ATTTAAAT	1 cut(s)	904
Sse9I	AATT	8 cut(s)	93, 145, 483, 880, 899, 905, 1033, 1186
SsiI	CCGC	8 cut(s)	42, 76, 185, 379, 449, 823, 844, 1066
StyD4I	CCNGG	5 cut(s)	234, 253, 490, 804, 917
SwaI	ATTTAAAT	1 cut(s)	904
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	2 cut(s)	104, 1142
TaqI	TCGA	2 cut(s)	549, 1129
TasI	AATT	8 cut(s)	93, 145, 483, 880, 899, 905, 1033, 1186
TatI	WGTACW	1 cut(s)	740
TauI	GCSGC	3 cut(s)	78, 381, 452
Tru1I	TTAA	5 cut(s)	732, 903, 909, 963, 1044
Tru9I	TTAA	5 cut(s)	732, 903, 909, 963, 1044
TscAI	CASTG	2 cut(s)	13, 225
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	2 cut(s)	446, 953
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	2 cut(s)	158, 635
TspGWI	ACGGA	1 cut(s)	1178
TspRI	CASTG	2 cut(s)	13, 225
Tth111I	GACNNNGTC	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	913
XapI	RAATTY	4 cut(s)	93, 145, 899, 905
XceI	RCATGY	2 cut(s)	658, 707
XmiI	GTMKAC	1 cut(s)	1129
XmnI	GAANNNNTTC	2 cut(s)	499, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.