Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004718

Physical Location & Seq

Genomic Coordinates Forward (+)

44590496 .. 44593348

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G020820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAATTCAGCACCTCATCTTCTTCTTCTTCAGCAATCTCTCCCGCCAATATCTTCCCCACAAAACCCAAGACCCACACTGACACCCTCACTCCCGGCGCATAATAACACCGCAGGCGCACGAAAATCCACACCAACTTACATAACAGCTTGCGCCAAAACAACACGAAAAACAGGAGGAAGAAGAAAAAACCCTGATGACTACCACGCCACTCTTACAGCTCTCAACTCCAAAGGCCGCTTCCCCAGAAAATCACTCGGCCAGCATTATATGTTGGACTCAGAGATCAATGACCAGCTTGTAGCTGCGGCCGAAGTTGGGGAAGGTGATGTGGTGTTGGAAATTGGGCCGGGAACTGGTTCTTTGACTAATGTTCTTATCAATGCTGGTGCAACTGTGCTCGCAATCGAAAAGGATCCATACATGGCTACTCTTGTAAGCGAAAGATTTGCGCAGACTGGTCAGTTGAAGGTTCTACAAGAGGACTTTGTCAAATGTCATATTCATTCACACATGTCATCATTATTGAGAAGTATAGAGTCATCCGGTGCAAGTTCAAGACATGCAAAAGTAGTCGCTAATATACCCTTTAATATAAGTACAGATGTAGTGAAACAACTTCTTCCAATGGGTGACATCTTCTCTGAAGTAATTCTCTTACTCCAGGAGGAGACAGCTTTCCGCTTGGTGGAGTCATATCTGCGGACATCTGAGTACCGGCCTATCAATGTCTTTGTCAATTTCTATTCAGATCCTGAATTTAAATTTAAGGTCCCCAGGACAAACTTCTTTCCTCAGCCTAATGTTGATGCTGCTGTTGTTAAGTTTAGGCTGAAGCAACCTACAGAGTATCCCCCAGTTTCCTCTACTAAAAGCTTCTTCTCAATGGTCAATTCAGCTTTTAATGGGAAACGCAAAATGTTGCGGAAATCACTTCAGCACATATGCACGCCCTCGGAGATTGAAAGTGCTTTGGAAAATGTTGGTCGACCTGCCACGTCAAGACCAGAAGAGCTAACCACGGATGATTTTGTGAAGTTGCATAATTTGATTGTGAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008649 GO:0008757 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016422 GO:0016433 GO:0016556 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0080009 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

354

Amino Acids

39.19

Weight (kDa)

9.11

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	83 - 329	2.3e-46	Ribosomal RNA adenine dimethylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01860 AT1G01860 AT1G01860 AT1G01860 AT1G01860
fragaria_vesca	FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110
malus_domestica	MD07G1128700.v1.1
prunus_persica	Prupe.2G154300_v2.0.a1 Prupe.2G154300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352201
rosa_laevigata	RLG00000028348
rosa_multiflora	Rmu_sc0011915.1_g000009
rosa_roxburghii	Rroxscaffold_4G00303070
rosa_rugosa	Rorug01G0226100 Rorug01G0226100
rosa_samantha	Rh1AG240300 Rh1BG211200 Rh1CG224300 Rh1DG237700
rosa_wichuraiana	Rw1G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	453
Acc36I	ACCTGC	1 cut(s)	1000
AccI	GTMKAC	1 cut(s)	988
AciI	CCGC	7 cut(s)	44, 111, 238, 308, 682, 703, 925
AclWI	GGATC	3 cut(s)	410, 423, 746
AcoI	YGGCCR	2 cut(s)	259, 309
AcsI	RAATTY	3 cut(s)	4, 758, 764
AcuI	CTGAAG	4 cut(s)	14, 666, 854, 920
AfaI	GTAC	2 cut(s)	601, 716
AfiI	CCNNNNNNNGG	3 cut(s)	318, 356, 688
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	3 cut(s)	469, 558, 965
AjiI	CACGTC	1 cut(s)	999
AjnI	CCWGG	2 cut(s)	663, 776
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	8 cut(s)	149, 221, 298, 305, 677, 876, 899, 1015
AluI	AGCT	8 cut(s)	149, 221, 298, 305, 677, 876, 899, 1015
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	3 cut(s)	410, 423, 746
AlwNI	CAGNNNCTG	1 cut(s)	755
AoxI	GGCC	5 cut(s)	235, 259, 309, 347, 719
ApeKI	GCWGC	2 cut(s)	305, 812
ApoI	RAATTY	3 cut(s)	4, 758, 764
Asp700I	GAANNNNTTC	2 cut(s)	358, 651
AspLEI	GCGC	4 cut(s)	100, 119, 155, 454
AspS9I	GGNCC	2 cut(s)	347, 772
AsuC2I	CCSGG	2 cut(s)	95, 351
AsuHPI	GGTGA	2 cut(s)	338, 644
AvaII	GGWCC	1 cut(s)	772
BamHI	GGATCC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	402
BbvCI	CCTCAGC	1 cut(s)	795
BbvI	GCAGC	2 cut(s)	292, 799
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	2 cut(s)	665, 778
BciVI	GTATCC	1 cut(s)	861
BcnI	CCSGG	2 cut(s)	95, 351
BcoDI	GTCTC	1 cut(s)	665
BfmI	CTRYAG	1 cut(s)	843
BfuAI	ACCTGC	1 cut(s)	1000
BfuI	GTATCC	1 cut(s)	861
BisI	GCNGC	4 cut(s)	238, 306, 309, 813
BlsI	GCNGC	4 cut(s)	239, 307, 310, 814
Bme1390I	CCNGG	4 cut(s)	95, 351, 665, 778
Bme18I	GGWCC	1 cut(s)	772
BmgBI	CACGTC	1 cut(s)	999
BmgT120I	GGNCC	2 cut(s)	347, 772
BmiI	GGNNCC	2 cut(s)	417, 774
BmrFI	CCNGG	4 cut(s)	95, 351, 665, 778
BmrI	ACTGGG	1 cut(s)	851
BmsI	GCATC	1 cut(s)	799
BmuI	ACTGGG	1 cut(s)	851
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	795
BpuMI	CCSGG	2 cut(s)	95, 351
BsaJI	CCNNGG	3 cut(s)	776, 954, 1020
BsaWI	WCCGGW	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	3 cut(s)	318, 356, 688
Bse118I	RCCGGY	1 cut(s)	717
Bse1I	ACTGG	3 cut(s)	361, 463, 857
BseBI	CCWGG	2 cut(s)	665, 778
BseDI	CCNNGG	3 cut(s)	776, 954, 1020
BseGI	GGATG	2 cut(s)	542, 1030
BseLI	CCNNNNNNNGG	3 cut(s)	318, 356, 688
BseMII	CTCAG	3 cut(s)	294, 702, 809
BseNI	ACTGG	3 cut(s)	361, 463, 857
BseRI	GAGGAG	1 cut(s)	683
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	292, 799
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	5 cut(s)	237, 261, 311, 349, 721
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	4 cut(s)	95, 350, 546, 718
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	3 cut(s)	318, 356, 688
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	758
BsnI	GGCC	5 cut(s)	237, 261, 311, 349, 721
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	3 cut(s)	285, 415, 751
BspACI	CCGC	7 cut(s)	44, 111, 238, 308, 682, 703, 925
BspANI	GGCC	5 cut(s)	237, 261, 311, 349, 721
BspCNI	CTCAG	3 cut(s)	293, 703, 808
BspLI	GGNNCC	2 cut(s)	417, 774
BspMI	ACCTGC	1 cut(s)	1000
BspPI	GGATC	3 cut(s)	410, 423, 746
BspQI	GCTCTTC	1 cut(s)	1005
BsrFI	RCCGGY	1 cut(s)	717
BsrI	ACTGG	3 cut(s)	361, 463, 857
BssAI	RCCGGY	1 cut(s)	717
BssECI	CCNNGG	3 cut(s)	776, 954, 1020
BssMI	GATC	3 cut(s)	285, 415, 751
Bst2UI	CCWGG	2 cut(s)	665, 778
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	1005
BstC8I	GCNNGC	5 cut(s)	115, 151, 263, 402, 950
BstDEI	CTNAG	3 cut(s)	280, 711, 795
BstDSI	CCRYGG	1 cut(s)	1020
BstF5I	GGATG	2 cut(s)	542, 1030
BstHHI	GCGC	4 cut(s)	100, 119, 155, 454
BstKTI	GATC	3 cut(s)	288, 418, 754
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	3 cut(s)	285, 415, 751
BstMCI	CGRYCG	1 cut(s)	312
BstNI	CCWGG	2 cut(s)	665, 778
BstNSI	RCATGY	2 cut(s)	517, 566
BstSCI	CCNGG	4 cut(s)	93, 349, 663, 776
BstSFI	CTRYAG	1 cut(s)	843
BstV1I	GCAGC	2 cut(s)	292, 799
BstX2I	RGATCY	2 cut(s)	415, 751
BstYI	RGATCY	2 cut(s)	415, 751
BstZI	CGGCCG	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	861
BsuRI	GGCC	5 cut(s)	237, 261, 311, 349, 721
BtgI	CCRYGG	1 cut(s)	1020
BtrI	CACGTC	1 cut(s)	999
BtsCI	GGATG	2 cut(s)	542, 1030
BtsIMutI	CAGTG	1 cut(s)	77
BveI	ACCTGC	1 cut(s)	1000
Cac8I	GCNNGC	5 cut(s)	115, 151, 263, 402, 950
CaiI	CAGNNNCTG	1 cut(s)	755
CfoI	GCGC	4 cut(s)	100, 119, 155, 454
Cfr10I	RCCGGY	1 cut(s)	717
Cfr13I	GGNCC	2 cut(s)	347, 772
Csp6I	GTAC	2 cut(s)	600, 715
CviAII	CATG	3 cut(s)	424, 514, 563
CviQI	GTAC	2 cut(s)	600, 715
DdeI	CTNAG	3 cut(s)	280, 711, 795
DpnI	GATC	3 cut(s)	287, 417, 753
DpnII	GATC	3 cut(s)	285, 415, 751
DraI	TTTAAA	1 cut(s)	763
EaeI	YGGCCR	2 cut(s)	259, 309
EagI	CGGCCG	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	1005
EarI	CTCTTC	1 cut(s)	1005
EclXI	CGGCCG	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	772
Eco52I	CGGCCG	1 cut(s)	309
Eco57I	CTGAAG	4 cut(s)	14, 666, 854, 920
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	663, 776
FaeI	CATG	3 cut(s)	427, 517, 566
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	3 cut(s)	423, 513, 562
FauI	CCCGC	1 cut(s)	51
FauNDI	CATATG	1 cut(s)	944
FblI	GTMKAC	1 cut(s)	988
Fnu4HI	GCNGC	4 cut(s)	238, 306, 309, 813
FokI	GGATG	2 cut(s)	529, 1037
Fsp4HI	GCNGC	4 cut(s)	238, 306, 309, 813
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	4 cut(s)	99, 118, 154, 453
GluI	GCNGC	4 cut(s)	238, 306, 309, 813
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	5 cut(s)	237, 261, 311, 349, 721
HapII	CCGG	4 cut(s)	95, 350, 546, 718
HhaI	GCGC	4 cut(s)	100, 119, 155, 454
Hin1II	CATG	3 cut(s)	427, 517, 566
Hin6I	GCGC	4 cut(s)	98, 117, 153, 452
HinP1I	GCGC	4 cut(s)	98, 117, 153, 452
HincII	GTYRAC	1 cut(s)	989
HindII	GTYRAC	1 cut(s)	989
HindIII	AAGCTT	1 cut(s)	874
HinfI	GANTC	3 cut(s)	278, 539, 692
HpaII	CCGG	4 cut(s)	95, 350, 546, 718
HphI	GGTGA	2 cut(s)	338, 644
Hpy166II	GTNNAC	1 cut(s)	989
Hpy188I	TCNGA	5 cut(s)	283, 646, 712, 751, 958
Hpy188III	TCNNGA	3 cut(s)	558, 755, 1002
Hpy8I	GTNNAC	1 cut(s)	989
HpyAV	CCTTC	2 cut(s)	317, 463
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	998
HpyCH4V	TGCA	5 cut(s)	392, 551, 566, 948, 1042
HpyF3I	CTNAG	3 cut(s)	280, 711, 795
HpySE526I	ACGT	1 cut(s)	998
Hsp92II	CATG	3 cut(s)	427, 517, 566
HspAI	GCGC	4 cut(s)	98, 117, 153, 452
Kzo9I	GATC	3 cut(s)	285, 415, 751
LguI	GCTCTTC	1 cut(s)	1005
Lsp1109I	GCAGC	2 cut(s)	292, 799
LweI	GCATC	1 cut(s)	799
MaeII	ACGT	1 cut(s)	998
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	3 cut(s)	287, 417, 753
MboI	GATC	3 cut(s)	285, 415, 751
MflI	RGATCY	2 cut(s)	415, 751
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	8 cut(s)	4, 342, 651, 739, 758, 764, 892, 1045
MlyI	GAGTC	3 cut(s)	272, 548, 701
MmeI	TCCRAC	2 cut(s)	255, 318
MnlI	CCTC	8 cut(s)	24, 97, 170, 475, 661, 804, 874, 964
MroXI	GAANNNNTTC	2 cut(s)	358, 651
MseI	TTAA	5 cut(s)	591, 762, 768, 822, 903
MspI	CCGG	4 cut(s)	95, 350, 546, 718
MspR9I	CCNGG	4 cut(s)	95, 351, 665, 778
MvaI	CCWGG	2 cut(s)	665, 778
NciI	CCSGG	2 cut(s)	95, 351
NdeI	CATATG	1 cut(s)	944
NdeII	GATC	3 cut(s)	285, 415, 751
NlaIII	CATG	3 cut(s)	427, 517, 566
NlaIV	GGNNCC	2 cut(s)	417, 774
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	632
NsbI	TGCGCA	1 cut(s)	453
NspI	RCATGY	2 cut(s)	517, 566
PciI	ACATGT	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	1005
PdmI	GAANNNNTTC	2 cut(s)	358, 651
PflFI	GACNNNGTC	1 cut(s)	488
PfoI	TCCNGGA	1 cut(s)	663
PkrI	GCNGC	4 cut(s)	239, 307, 310, 814
PleI	GAGTC	3 cut(s)	272, 547, 700
PpsI	GAGTC	3 cut(s)	272, 547, 700
PpuMI	RGGWCCY	1 cut(s)	772
PscI	ACATGT	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	663, 776
PspGI	CCWGG	2 cut(s)	663, 776
PspN4I	GGNNCC	2 cut(s)	417, 774
PspPI	GGNCC	2 cut(s)	347, 772
PspPPI	RGGWCCY	1 cut(s)	772
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	2 cut(s)	415, 751
PsyI	GACNNNGTC	1 cut(s)	488
RsaI	GTAC	2 cut(s)	601, 716
RsaNI	GTAC	2 cut(s)	600, 715
SalI	GTCGAC	1 cut(s)	987
SapI	GCTCTTC	1 cut(s)	1005
SaqAI	TTAA	5 cut(s)	591, 762, 768, 822, 903
SatI	GCNGC	4 cut(s)	238, 306, 309, 813
Sau3AI	GATC	3 cut(s)	285, 415, 751
Sau96I	GGNCC	2 cut(s)	347, 772
SchI	GAGTC	3 cut(s)	272, 548, 701
ScrFI	CCNGG	4 cut(s)	95, 351, 665, 778
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	799
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	1 cut(s)	772
SmiI	ATTTAAAT	1 cut(s)	763
Sse9I	AATT	8 cut(s)	4, 342, 651, 739, 758, 764, 892, 1045
SsiI	CCGC	7 cut(s)	44, 111, 238, 308, 682, 703, 925
StyD4I	CCNGG	4 cut(s)	93, 349, 663, 776
SwaI	ATTTAAAT	1 cut(s)	763
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	1001
TaqI	TCGA	2 cut(s)	408, 988
TasI	AATT	8 cut(s)	4, 342, 651, 739, 758, 764, 892, 1045
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	2 cut(s)	240, 311
Tru1I	TTAA	5 cut(s)	591, 762, 768, 822, 903
Tru9I	TTAA	5 cut(s)	591, 762, 768, 822, 903
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	2 cut(s)	305, 812
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	2 cut(s)	17, 494
TspGWI	ACGGA	1 cut(s)	1037
TspRI	CASTG	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	3 cut(s)	4, 758, 764
XceI	RCATGY	2 cut(s)	517, 566
XmiI	GTMKAC	1 cut(s)	988
XmnI	GAANNNNTTC	2 cut(s)	358, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.