Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004718

Physical Location & Seq

Genomic Coordinates Forward (+)

20821811 .. 20825370

Gene Structure 3560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G154300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAACTCACCACCTCTTCTTCTTCTTCAGCAATCTCTCACGCCAATATCCCCAACTGAAAATCTAATTCAAGTGAAATCTCCACTCCCGGTGCACAATAGCACACTCGGCGCTCGAACACCTGCATCATCATCATCATCACTTTGTTATATAAGAGCTTGCGCTGGTAAAACAACAAGAAGAGTAGGAAGAGGAGGAAGAGGAAACCCAGATGACTACCATGGCACTCTCACTGCTCTCAACTCCAAAGGCCGCTTCCCTAGAAAATCCCTCGGCCAGCATTATATGTTGGACTCTGAGATCAACGAGCAGCTCACTGCTGCGGCTAATGTTGGAGAAGGTGATGTGGTGCTAGAAATTGGGCCAGGAACAGGTTCTTTGACTAATGTGCTTATTAGTGCCGGTGCATTTGTTCTCGCAATCGAAAAGGATCCACACATGGCTACTCTTGTGAGTGAAAGATTTTCAGAGACTGAACGGTTCAAGGTTTTGAAAGAGGACTTTGTCAAATGTCACATTCACTCTCATATGTCATCATTGTTGGCAAGTATAGAGCCATCCAGTGCAGATTCAAGACATGCGAAAGTAGTAGCTAATATACCCTTTAATATAAGTACAGATGTTGTCAAACGACTTCTTCCAATGGGTGACATCTTTTCTGAAGTAGTACTCTTACTCCAGGAGGAGACAGCTTTGCGGCTGGTGGAATCATCTTTGCGAACATCTGAGTACCGGCCCATCAATATCTTCGTCAATTTCTATTCAGATCCTCAATTCATATGTAAGGTTCCAAGGACAAAATTCTTTCCTCAGCCCAACGTTGATGCTGCTGTGGTTAAATTTAAGCTGAAGCAACCTGCACACCACCCCTCAGTTTCCTCAACTAAAAGCTTCTTCTCAATGGTAAATTCTGCTTTTAATGGGAAACGTAAGATGTTGAGGAGATCACTTCAGCACATATGCACGCCCATGGAGATTGAAAATGCTTTGGGAAATGTTGGTCGTCCTGCCACGTCAAGACCAGAAGAGCTATCCATGGATGATTTTGTGAAGTTGCATAATTTGATTGTGAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008649 GO:0008757 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016422 GO:0016433 GO:0016556 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0080009 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

360

Amino Acids

39.5

Weight (kDa)

9.25

Isoelectric Point (pI)

63.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01860 AT1G01860 AT1G01860 AT1G01860 AT1G01860
fragaria_vesca	FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110
malus_domestica	MD07G1128700.v1.1
prunus_persica	Prupe.2G154300_v2.0.a1 Prupe.2G154300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352201
rosa_laevigata	RLG00000028348
rosa_multiflora	Rmu_sc0011915.1_g000009
rosa_roxburghii	Rroxscaffold_4G00303070
rosa_rugosa	Rorug01G0226100 Rorug01G0226100
rosa_samantha	Rh1AG240300 Rh1BG211200 Rh1CG224300 Rh1DG237700
rosa_wichuraiana	Rw1G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	2 cut(s)	130, 865
AciI	CCGC	3 cut(s)	253, 323, 697
AclI	AACGTT	1 cut(s)	819
AclWI	GGATC	3 cut(s)	425, 438, 761
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	3 cut(s)	800, 839, 907
AcuI	CTGAAG	4 cut(s)	11, 681, 869, 935
AfaI	GTAC	3 cut(s)	616, 669, 731
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	71, 484, 493, 573, 980
AjiI	CACGTC	1 cut(s)	1014
AjnI	CCWGG	2 cut(s)	364, 678
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	7 cut(s)	158, 313, 593, 692, 847, 891, 1030
AluI	AGCT	7 cut(s)	158, 313, 593, 692, 847, 891, 1030
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	464, 680
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	3 cut(s)	425, 438, 761
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	4 cut(s)	250, 274, 362, 734
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	3 cut(s)	310, 320, 827
ApoI	RAATTY	3 cut(s)	800, 839, 907
Asp700I	GAANNNNTTC	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	113, 164
AspS9I	GGNCC	2 cut(s)	362, 735
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	353, 659
BaeGI	GKGCMC	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	810
BbvI	GCAGC	3 cut(s)	307, 322, 814
BccI	CCATC	2 cut(s)	565, 746
BciT130I	CCWGG	2 cut(s)	366, 680
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	464, 680
BfaI	CTAG	2 cut(s)	261, 353
BfoI	RGCGCY	1 cut(s)	114
BfuAI	ACCTGC	2 cut(s)	130, 865
BisI	GCNGC	6 cut(s)	253, 311, 321, 324, 698, 828
BlsI	GCNGC	6 cut(s)	254, 312, 322, 325, 699, 829
BmcAI	AGTACT	1 cut(s)	669
Bme1390I	CCNGG	3 cut(s)	89, 366, 680
BmgBI	CACGTC	1 cut(s)	1014
BmgT120I	GGNCC	2 cut(s)	362, 735
BmiI	GGNNCC	2 cut(s)	432, 789
BmrFI	CCNGG	3 cut(s)	89, 366, 680
BmsI	GCATC	2 cut(s)	134, 814
BpmI	CTGGAG	1 cut(s)	662
Bpu10I	CCTNAGC	1 cut(s)	810
BpuMI	CCSGG	1 cut(s)	89
BsaJI	CCNNGG	5 cut(s)	220, 271, 791, 969, 1035
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse118I	RCCGGY	2 cut(s)	401, 732
Bse1I	ACTGG	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	366, 680
BseDI	CCNNGG	5 cut(s)	220, 271, 791, 969, 1035
BseGI	GGATG	2 cut(s)	557, 1045
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	4 cut(s)	288, 717, 824, 885
BseNI	ACTGG	1 cut(s)	561
BseRI	GAGGAG	3 cut(s)	207, 698, 955
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	3 cut(s)	307, 322, 814
BsgI	GTGCAG	2 cut(s)	585, 843
BshFI	GGCC	4 cut(s)	252, 276, 364, 736
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	3 cut(s)	89, 402, 733
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	2 cut(s)	464, 680
BsnI	GGCC	4 cut(s)	252, 276, 364, 736
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	300, 430, 766, 944
Bsp19I	CCATGG	3 cut(s)	220, 969, 1035
BspACI	CCGC	3 cut(s)	253, 323, 697
BspANI	GGCC	4 cut(s)	252, 276, 364, 736
BspCNI	CTCAG	4 cut(s)	289, 718, 823, 884
BspLI	GGNNCC	2 cut(s)	432, 789
BspMI	ACCTGC	2 cut(s)	130, 865
BspPI	GGATC	3 cut(s)	425, 438, 761
BspQI	GCTCTTC	1 cut(s)	1020
BsrFI	RCCGGY	2 cut(s)	401, 732
BsrI	ACTGG	1 cut(s)	561
BssAI	RCCGGY	2 cut(s)	401, 732
BssECI	CCNNGG	5 cut(s)	220, 271, 791, 969, 1035
BssMI	GATC	4 cut(s)	300, 430, 766, 944
BssT1I	CCWWGG	4 cut(s)	220, 791, 969, 1035
Bst2UI	CCWGG	2 cut(s)	366, 680
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	5 cut(s)	21, 175, 184, 193, 1020
BstC8I	GCNNGC	3 cut(s)	160, 278, 965
BstDEI	CTNAG	4 cut(s)	297, 726, 810, 871
BstDSI	CCRYGG	3 cut(s)	220, 969, 1035
BstF5I	GGATG	2 cut(s)	557, 1045
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 164
BstKTI	GATC	4 cut(s)	303, 433, 769, 947
BstMAI	GTCTC	2 cut(s)	464, 680
BstMBI	GATC	4 cut(s)	300, 430, 766, 944
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	2 cut(s)	366, 680
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	3 cut(s)	87, 364, 678
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	307, 322, 814
BstX2I	RGATCY	2 cut(s)	430, 766
BstYI	RGATCY	2 cut(s)	430, 766
BsuRI	GGCC	4 cut(s)	252, 276, 364, 736
BtgI	CCRYGG	3 cut(s)	220, 969, 1035
BtrI	CACGTC	1 cut(s)	1014
BtsCI	GGATG	2 cut(s)	557, 1045
BtsI	GCAGTG	2 cut(s)	231, 315
BtsIMutI	CAGTG	3 cut(s)	231, 315, 568
BveI	ACCTGC	2 cut(s)	130, 865
Cac8I	GCNNGC	3 cut(s)	160, 278, 965
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	2 cut(s)	113, 164
Cfr10I	RCCGGY	2 cut(s)	401, 732
Cfr13I	GGNCC	2 cut(s)	362, 735
Csp6I	GTAC	3 cut(s)	615, 668, 730
CviAII	CATG	5 cut(s)	221, 439, 578, 970, 1036
CviQI	GTAC	3 cut(s)	615, 668, 730
DdeI	CTNAG	4 cut(s)	297, 726, 810, 871
DpnI	GATC	4 cut(s)	302, 432, 768, 946
DpnII	GATC	4 cut(s)	300, 430, 766, 944
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	5 cut(s)	21, 175, 184, 193, 1020
EarI	CTCTTC	5 cut(s)	21, 175, 184, 193, 1020
Eco130I	CCWWGG	4 cut(s)	220, 791, 969, 1035
Eco57I	CTGAAG	4 cut(s)	11, 681, 869, 935
EcoRII	CCWGG	2 cut(s)	364, 678
EcoT14I	CCWWGG	4 cut(s)	220, 791, 969, 1035
ErhI	CCWWGG	4 cut(s)	220, 791, 969, 1035
FaeI	CATG	5 cut(s)	224, 442, 581, 973, 1039
FatI	CATG	5 cut(s)	220, 438, 577, 969, 1035
FauNDI	CATATG	3 cut(s)	528, 779, 959
Fnu4HI	GCNGC	6 cut(s)	253, 311, 321, 324, 698, 828
FokI	GGATG	2 cut(s)	544, 1052
Fsp4HI	GCNGC	6 cut(s)	253, 311, 321, 324, 698, 828
FspBI	CTAG	2 cut(s)	261, 353
GlaI	GCGC	2 cut(s)	112, 163
GluI	GCNGC	6 cut(s)	253, 311, 321, 324, 698, 828
GsuI	CTGGAG	1 cut(s)	662
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	4 cut(s)	252, 276, 364, 736
HapII	CCGG	3 cut(s)	89, 402, 733
HhaI	GCGC	2 cut(s)	113, 164
Hin1II	CATG	5 cut(s)	224, 442, 581, 973, 1039
Hin6I	GCGC	2 cut(s)	111, 162
HinP1I	GCGC	2 cut(s)	111, 162
HindIII	AAGCTT	1 cut(s)	889
HinfI	GANTC	3 cut(s)	293, 569, 707
HpaII	CCGG	3 cut(s)	89, 402, 733
HphI	GGTGA	2 cut(s)	353, 659
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	5 cut(s)	298, 469, 661, 727, 766
Hpy188III	TCNNGA	2 cut(s)	573, 1017
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	3 cut(s)	819, 928, 1013
HpyCH4V	TGCA	7 cut(s)	94, 125, 407, 566, 860, 963, 1057
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	4 cut(s)	297, 726, 810, 871
HpySE526I	ACGT	3 cut(s)	819, 928, 1013
Hsp92II	CATG	5 cut(s)	224, 442, 581, 973, 1039
HspAI	GCGC	2 cut(s)	111, 162
Kzo9I	GATC	4 cut(s)	300, 430, 766, 944
LguI	GCTCTTC	1 cut(s)	1020
Lsp1109I	GCAGC	3 cut(s)	307, 322, 814
LweI	GCATC	2 cut(s)	134, 814
MaeI	CTAG	2 cut(s)	261, 353
MaeII	ACGT	3 cut(s)	819, 928, 1013
MaeIII	GTNAC	2 cut(s)	512, 647
MalI	GATC	4 cut(s)	302, 432, 768, 946
MboI	GATC	4 cut(s)	300, 430, 766, 944
MflI	RGATCY	2 cut(s)	430, 766
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	8 cut(s)	66, 357, 754, 773, 800, 839, 907, 1060
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	270, 313
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	4 cut(s)	606, 837, 843, 918
MslI	CAYNNNNRTG	1 cut(s)	968
MspI	CCGG	3 cut(s)	89, 402, 733
MspR9I	CCNGG	3 cut(s)	89, 366, 680
MvaI	CCWGG	2 cut(s)	366, 680
MwoI	GCNNNNNNNGC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	89
NcoI	CCATGG	3 cut(s)	220, 969, 1035
NdeI	CATATG	3 cut(s)	528, 779, 959
NdeII	GATC	4 cut(s)	300, 430, 766, 944
NlaIII	CATG	5 cut(s)	224, 442, 581, 973, 1039
NlaIV	GGNNCC	2 cut(s)	432, 789
NmeAIII	GCCGAG	2 cut(s)	87, 252
NmuCI	GTSAC	2 cut(s)	512, 647
NspI	RCATGY	1 cut(s)	581
PaqCI	CACCTGC	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	1020
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	569, 707
PflFI	GACNNNGTC	1 cut(s)	503
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	6 cut(s)	254, 312, 322, 325, 699, 829
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp1406I	AACGTT	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	364, 678
PspGI	CCWGG	2 cut(s)	364, 678
PspN4I	GGNNCC	2 cut(s)	432, 789
PspPI	GGNCC	2 cut(s)	362, 735
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	430, 766
PsyI	GACNNNGTC	1 cut(s)	503
RsaI	GTAC	3 cut(s)	616, 669, 731
RsaNI	GTAC	3 cut(s)	615, 668, 730
RseI	CAYNNNNRTG	1 cut(s)	968
SapI	GCTCTTC	1 cut(s)	1020
SaqAI	TTAA	4 cut(s)	606, 837, 843, 918
SatI	GCNGC	6 cut(s)	253, 311, 321, 324, 698, 828
Sau3AI	GATC	4 cut(s)	300, 430, 766, 944
Sau96I	GGNCC	2 cut(s)	362, 735
ScaI	AGTACT	1 cut(s)	669
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	89, 366, 680
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	134, 814
SmiMI	CAYNNNNRTG	1 cut(s)	968
Sse9I	AATT	8 cut(s)	66, 357, 754, 773, 800, 839, 907, 1060
SsiI	CCGC	3 cut(s)	253, 323, 697
SspMI	CTAG	2 cut(s)	261, 353
StyD4I	CCNGG	3 cut(s)	87, 364, 678
StyI	CCWWGG	4 cut(s)	220, 791, 969, 1035
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	3 cut(s)	822, 931, 1016
TaqI	TCGA	2 cut(s)	115, 423
TasI	AATT	8 cut(s)	66, 357, 754, 773, 800, 839, 907, 1060
TatI	WGTACW	2 cut(s)	614, 667
TauI	GCSGC	3 cut(s)	255, 326, 700
TfiI	GAWTC	2 cut(s)	569, 707
Tru1I	TTAA	4 cut(s)	606, 837, 843, 918
Tru9I	TTAA	4 cut(s)	606, 837, 843, 918
TscAI	CASTG	3 cut(s)	238, 322, 568
TseFI	GTSAC	2 cut(s)	512, 647
TseI	GCWGC	3 cut(s)	310, 320, 827
Tsp45I	GTSAC	2 cut(s)	512, 647
TspDTI	ATGAA	2 cut(s)	17, 766
TspRI	CASTG	3 cut(s)	238, 322, 568
Tth111I	GACNNNGTC	1 cut(s)	503
VneI	GTGCAC	1 cut(s)	92
XapI	RAATTY	3 cut(s)	800, 839, 907
XceI	RCATGY	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	2 cut(s)	261, 353
ZrmI	AGTACT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.