Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004718

Physical Location & Seq

Genomic Coordinates Forward (+)

33038724 .. 33042989

Gene Structure 4266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAATTCATCACCTCATCTTCTTCTTCTTCAGCAATCTCTCCCGCCAATATCTTCCCTACAAAACCCAAAACCCACAGTGAGACCCCCACTCCCGGCGCACAATAGCACCCCCGGCGCACGAAAATCCACACCACTTTATATAACAGCTTGCGCCAAAACAACACGAAAAACAGGAGGAAGAAGAAAAAACCCAGATGACTACCACGGCACTCTTACAGCTCTCAACTCCAAAGGCCGCTTCCCCAGGAAATCACTTGGCCAGCATTATATGTTGGACTCAGAGATCAATGACCAGCTTGTGGCTGCGGCCGAAGTTGGGGAAGGTGATGTGGTGTTGGAAATTGGGCCGGGAACTGGTTCTTTGACTAATGTTCTTATCAATGCTGGTGCAACTGTGCTCGCAATCGAAAAGGATCCATACATGGCAACTCTTGTAAGCGAAAGATTTGCGCAGACTGGTCAGTTGAAGGTTCTACAAGAGGACTTTGTCAAATGTCATATTCATTCACACATGTCATCATTATTGAGAAGTATAGAGTCATCCGGTGCAAGTTCAAGACATGCAAAAGTAGTCGCTAATATACCCTTTAATATAAGTACAGATGTAGTCAAACAACTTCTTCCAATGGGTGACATCTTCTCTGAAGTAGTTCTCTTACTCCAGGAGGAGACAGCTTTCCGCTTGGTGGAGTCATATCTGCGGACATCTGAGTACAGGCCTATCAATGTCTTTGTCAATTTCTATTCAGGTATCTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008649 GO:0008757 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016422 GO:0016433 GO:0016556 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0080009 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

254

Amino Acids

27.73

Weight (kDa)

8.83

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	83 - 248	4.6e-29	Ribosomal RNA adenine dimethylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01860 AT1G01860 AT1G01860 AT1G01860 AT1G01860
fragaria_vesca	FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110
malus_domestica	MD07G1128700.v1.1
prunus_persica	Prupe.2G154300_v2.0.a1 Prupe.2G154300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352201
rosa_laevigata	RLG00000028348
rosa_multiflora	Rmu_sc0011915.1_g000009
rosa_roxburghii	Rroxscaffold_4G00303070
rosa_rugosa	Rorug01G0226100 Rorug01G0226100
rosa_samantha	Rh1AG240300 Rh1BG211200 Rh1CG224300 Rh1DG237700
rosa_wichuraiana	Rw1G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	453
AccB7I	CCANNNNNTGG	1 cut(s)	301
AciI	CCGC	5 cut(s)	44, 238, 308, 682, 703
AclWI	GGATC	2 cut(s)	410, 423
AcoI	YGGCCR	2 cut(s)	259, 309
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	14, 666
AfaI	GTAC	2 cut(s)	601, 716
AfiI	CCNNNNNNNGG	5 cut(s)	94, 301, 318, 356, 688
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	2 cut(s)	469, 558
AjnI	CCWGG	2 cut(s)	245, 663
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	4 cut(s)	149, 221, 298, 677
AluI	AGCT	4 cut(s)	149, 221, 298, 677
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	2 cut(s)	76, 665
AlwI	GGATC	2 cut(s)	410, 423
AoxI	GGCC	5 cut(s)	235, 259, 309, 347, 719
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	2 cut(s)	358, 651
AspLEI	GCGC	4 cut(s)	100, 119, 155, 454
AspS9I	GGNCC	1 cut(s)	347
AsuC2I	CCSGG	3 cut(s)	95, 114, 351
AsuHPI	GGTGA	3 cut(s)	3, 338, 644
BalI	TGGCCA	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	2 cut(s)	247, 665
BcnI	CCSGG	3 cut(s)	95, 114, 351
BcoDI	GTCTC	2 cut(s)	76, 665
BisI	GCNGC	3 cut(s)	238, 306, 309
BlsI	GCNGC	3 cut(s)	239, 307, 310
Bme1390I	CCNGG	5 cut(s)	95, 114, 247, 351, 665
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	5 cut(s)	95, 114, 247, 351, 665
BpmI	CTGGAG	1 cut(s)	647
BpuMI	CCSGG	3 cut(s)	95, 114, 351
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	3 cut(s)	112, 205, 245
BsaWI	WCCGGW	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 301, 318, 356, 688
Bse1I	ACTGG	2 cut(s)	361, 463
BseBI	CCWGG	2 cut(s)	247, 665
BseDI	CCNNGG	3 cut(s)	112, 205, 245
BseGI	GGATG	1 cut(s)	542
BseLI	CCNNNNNNNGG	5 cut(s)	94, 301, 318, 356, 688
BseMII	CTCAG	2 cut(s)	294, 702
BseNI	ACTGG	2 cut(s)	361, 463
BseRI	GAGGAG	1 cut(s)	683
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	292
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	5 cut(s)	237, 261, 311, 349, 721
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	4 cut(s)	95, 114, 350, 546
BslI	CCNNNNNNNGG	5 cut(s)	94, 301, 318, 356, 688
BsmAI	GTCTC	2 cut(s)	76, 665
BsnI	GGCC	5 cut(s)	237, 261, 311, 349, 721
Bso31I	GGTCTC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	285, 415
BspACI	CCGC	5 cut(s)	44, 238, 308, 682, 703
BspANI	GGCC	5 cut(s)	237, 261, 311, 349, 721
BspCNI	CTCAG	2 cut(s)	293, 703
BspLI	GGNNCC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	410, 423
BspTNI	GGTCTC	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	361, 463
BssECI	CCNNGG	3 cut(s)	112, 205, 245
BssMI	GATC	2 cut(s)	285, 415
Bst2UI	CCWGG	2 cut(s)	247, 665
Bst4CI	ACNGT	2 cut(s)	79, 397
BstC8I	GCNNGC	3 cut(s)	151, 263, 402
BstDEI	CTNAG	2 cut(s)	280, 711
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	542
BstHHI	GCGC	4 cut(s)	100, 119, 155, 454
BstKTI	GATC	2 cut(s)	288, 418
BstMAI	GTCTC	2 cut(s)	76, 665
BstMBI	GATC	2 cut(s)	285, 415
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNI	CCWGG	2 cut(s)	247, 665
BstNSI	RCATGY	2 cut(s)	517, 566
BstSCI	CCNGG	5 cut(s)	93, 112, 245, 349, 663
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BstZI	CGGCCG	1 cut(s)	309
BsuRI	GGCC	5 cut(s)	237, 261, 311, 349, 721
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	542
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	151, 263, 402
CfoI	GCGC	4 cut(s)	100, 119, 155, 454
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	600, 715
CviAII	CATG	3 cut(s)	424, 514, 563
CviQI	GTAC	2 cut(s)	600, 715
DdeI	CTNAG	2 cut(s)	280, 711
DpnI	GATC	2 cut(s)	287, 417
DpnII	GATC	2 cut(s)	285, 415
EaeI	YGGCCR	2 cut(s)	259, 309
EagI	CGGCCG	1 cut(s)	309
EclXI	CGGCCG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	721
Eco31I	GGTCTC	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	309
Eco57I	CTGAAG	2 cut(s)	14, 666
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	245, 663
FaeI	CATG	3 cut(s)	427, 517, 566
FatI	CATG	3 cut(s)	423, 513, 562
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	238, 306, 309
FokI	GGATG	1 cut(s)	529
Fsp4HI	GCNGC	3 cut(s)	238, 306, 309
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	4 cut(s)	99, 118, 154, 453
GluI	GCNGC	3 cut(s)	238, 306, 309
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	5 cut(s)	237, 261, 311, 349, 721
HapII	CCGG	4 cut(s)	95, 114, 350, 546
HhaI	GCGC	4 cut(s)	100, 119, 155, 454
Hin1II	CATG	3 cut(s)	427, 517, 566
Hin6I	GCGC	4 cut(s)	98, 117, 153, 452
HinP1I	GCGC	4 cut(s)	98, 117, 153, 452
HinfI	GANTC	3 cut(s)	278, 539, 692
HpaII	CCGG	4 cut(s)	95, 114, 350, 546
HphI	GGTGA	3 cut(s)	3, 338, 644
Hpy188I	TCNGA	3 cut(s)	283, 646, 712
Hpy188III	TCNNGA	1 cut(s)	558
HpyAV	CCTTC	2 cut(s)	317, 463
HpyCH4III	ACNGT	2 cut(s)	79, 397
HpyCH4V	TGCA	3 cut(s)	392, 551, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	280, 711
Hsp92II	CATG	3 cut(s)	427, 517, 566
HspAI	GCGC	4 cut(s)	98, 117, 153, 452
Kzo9I	GATC	2 cut(s)	285, 415
Lsp1109I	GCAGC	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	2 cut(s)	287, 417
MboI	GATC	2 cut(s)	285, 415
MboII	GAAGA	9 cut(s)	11, 14, 17, 20, 45, 192, 195, 614, 631
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	402
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	4 cut(s)	4, 342, 739, 759
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	3 cut(s)	272, 548, 701
MmeI	TCCRAC	2 cut(s)	255, 318
MnlI	CCTC	4 cut(s)	24, 170, 475, 661
Mox20I	TGGCCA	1 cut(s)	261
MroXI	GAANNNNTTC	2 cut(s)	358, 651
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	261
MspI	CCGG	4 cut(s)	95, 114, 350, 546
MspR9I	CCNGG	5 cut(s)	95, 114, 247, 351, 665
MvaI	CCWGG	2 cut(s)	247, 665
MwoI	GCNNNNNNNGC	1 cut(s)	114
NciI	CCSGG	3 cut(s)	95, 114, 351
NdeII	GATC	2 cut(s)	285, 415
NlaIII	CATG	3 cut(s)	427, 517, 566
NlaIV	GGNNCC	1 cut(s)	417
NmuCI	GTSAC	1 cut(s)	632
NsbI	TGCGCA	1 cut(s)	453
NspI	RCATGY	2 cut(s)	517, 566
PceI	AGGCCT	1 cut(s)	721
PciI	ACATGT	1 cut(s)	513
PdmI	GAANNNNTTC	2 cut(s)	358, 651
PflFI	GACNNNGTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	301
PfoI	TCCNGGA	1 cut(s)	663
PkrI	GCNGC	3 cut(s)	239, 307, 310
PleI	GAGTC	3 cut(s)	272, 547, 700
PpsI	GAGTC	3 cut(s)	272, 547, 700
PscI	ACATGT	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	245, 663
PspGI	CCWGG	2 cut(s)	245, 663
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	488
RsaI	GTAC	2 cut(s)	601, 716
RsaNI	GTAC	2 cut(s)	600, 715
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	3 cut(s)	238, 306, 309
Sau3AI	GATC	2 cut(s)	285, 415
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	3 cut(s)	272, 548, 701
ScrFI	CCNGG	5 cut(s)	95, 114, 247, 351, 665
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	8 cut(s)	16, 151, 223, 300, 328, 474, 679, 754
Sse9I	AATT	4 cut(s)	4, 342, 739, 759
SseBI	AGGCCT	1 cut(s)	721
SsiI	CCGC	5 cut(s)	44, 238, 308, 682, 703
StuI	AGGCCT	1 cut(s)	721
StyD4I	CCNGG	5 cut(s)	93, 112, 245, 349, 663
TaaI	ACNGT	2 cut(s)	79, 397
TaqI	TCGA	1 cut(s)	408
TasI	AATT	4 cut(s)	4, 342, 739, 759
TatI	WGTACW	2 cut(s)	599, 714
TauI	GCSGC	2 cut(s)	240, 311
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	2 cut(s)	17, 494
TspRI	CASTG	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	488
Van91I	CCANNNNNTGG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	2 cut(s)	517, 566
XmnI	GAANNNNTTC	2 cut(s)	358, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.