Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004718

Physical Location & Seq

Genomic Coordinates Forward (+)

11832831 .. 11837039

Gene Structure 4209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13110.t10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAACTCAGCCCCTCATCTTCTTCTGCTTCACCAATCTCTCCCGCCAATACAAAACCCAAAACCCACACTCGCGGCGCAGAATAGCACCCCCGGCGCACGACAATCGACCCCAACTTATATAACAGCTTGCGCCAAAACAACACGAAAGACAGGCGGAGGAGGAGGAAGAAGAAAGAACCCAGATGACTACCACGCCACTCTTACCGCTCTCAACTCCAAAGGCCGGTTCCCCCGCAAATCACTTGGCCAGCATTACATGTTGGACTCGGAGGTCAATGACCAACTTGTGGCTGCGGCTGAAGTTGGGGAAGGTGATGTGGTGCTGGAAATTGGACCCGGAACTGGTTCTTTGACTAATGTTCTTATCAATGCTGGTGCCACTGTGCTCGCTATCGAAAAGGATCCATACATGGCTACCCTTGTTAGCGAAAGGTTTGCGCAGACTGGTCAGTTGAAGGTTTTGCAAGAGGACTTTGTCAAATGTCATATTCATTCACATATGTCATCATTGTTGAGTAGTATAGAGTCATCCGGGGCAAGTCCAAGACATGCGAAAGTAGTTGCTAACATACCCTTTAATATAAGTACAGATGTAGTCAAACAACTTCTTCCAATGGGTGACATCTTCTCTGAAGTAGTTCTCTTACTCCAGGAGGAGACAGCTTTTCGCTTGGTCAAGTCATATCTGCGGACATCTGAATACCGGCCTATCAATATCTTCATCAATTTCTATTCAGATCCTGAATTCAAATTTAAGGTCCCCAGGGCAAACTTCTTTCCTCAGCCTAACGTTGATGCTGCTGTTGTTAAGTTTAGGCTGAAGGAACCTACACAGTATCCCTCAGTTTCCTCGACTAAAAGCTTCTTTTCTATGGTGAATTCAGCTTTTAATGGGAAACGCAAAATGTTGCGGAAATCACTTCAGCACATATGCACACCCTCAGAGATTGAAAGTGCTTTGGAAAATGTCGGTCGACCTGCCACGTCAAGACCAGAAGAGCTAACCACGGAGGATTTTGTAAAGCTGCATAATATGATTGTGACAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008649 GO:0008757 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016422 GO:0016433 GO:0016556 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0080009 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

351

Amino Acids

38.54

Weight (kDa)

8.98

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	65 - 206	3.8e-23	Ribosomal RNA adenine dimethylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01860 AT1G01860 AT1G01860 AT1G01860 AT1G01860
fragaria_vesca	FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110 FvH4_7g13110
malus_domestica	MD07G1128700.v1.1
prunus_persica	Prupe.2G154300_v2.0.a1 Prupe.2G154300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352201
rosa_laevigata	RLG00000028348
rosa_multiflora	Rmu_sc0011915.1_g000009
rosa_roxburghii	Rroxscaffold_4G00303070
rosa_rugosa	Rorug01G0226100 Rorug01G0226100
rosa_samantha	Rh1AG240300 Rh1BG211200 Rh1CG224300 Rh1DG237700
rosa_wichuraiana	Rw1G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc16I	TGCGCA	1 cut(s)	441
Acc36I	ACCTGC	1 cut(s)	988
AccB1I	GGYRCC	1 cut(s)	377
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	976
AccII	CGCG	1 cut(s)	74
AciI	CCGC	8 cut(s)	44, 74, 156, 207, 235, 296, 691, 913
AclI	AACGTT	1 cut(s)	792
AclWI	GGATC	3 cut(s)	398, 411, 734
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	3 cut(s)	746, 752, 880
AcuI	CTGAAG	4 cut(s)	321, 654, 842, 908
AfaI	GTAC	1 cut(s)	589
AfiI	CCNNNNNNNGG	3 cut(s)	225, 289, 344
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	457, 751, 953
AjiI	CACGTC	1 cut(s)	987
AjnI	CCWGG	2 cut(s)	651, 764
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	6 cut(s)	128, 665, 864, 887, 1003, 1027
AluI	AGCT	6 cut(s)	128, 665, 864, 887, 1003, 1027
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	3 cut(s)	398, 411, 734
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	3 cut(s)	223, 247, 707
ApeKI	GCWGC	3 cut(s)	293, 800, 1027
ApoI	RAATTY	3 cut(s)	746, 752, 880
ArsI	GACNNNNNNTTYG	2 cut(s)	744, 776
Asp700I	GAANNNNTTC	2 cut(s)	346, 639
AspLEI	GCGC	4 cut(s)	79, 98, 134, 442
AspS9I	GGNCC	2 cut(s)	335, 760
AsuC2I	CCSGG	3 cut(s)	93, 339, 535
AsuHPI	GGTGA	4 cut(s)	23, 326, 632, 889
AvaII	GGWCC	2 cut(s)	335, 760
BalI	TGGCCA	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	3 cut(s)	280, 787, 1014
BcgI	CGANNNNNNTGC	4 cut(s)	87, 121, 419, 453
BciT130I	CCWGG	2 cut(s)	653, 766
BciVI	GTATCC	1 cut(s)	849
BcnI	CCSGG	3 cut(s)	93, 339, 535
BcoDI	GTCTC	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	988
BfuI	GTATCC	1 cut(s)	849
BisI	GCNGC	5 cut(s)	75, 294, 297, 801, 1028
BlsI	GCNGC	5 cut(s)	76, 295, 298, 802, 1029
Bme1390I	CCNGG	5 cut(s)	93, 339, 535, 653, 766
Bme18I	GGWCC	2 cut(s)	335, 760
BmgBI	CACGTC	1 cut(s)	987
BmgT120I	GGNCC	2 cut(s)	335, 760
BmiI	GGNNCC	6 cut(s)	230, 337, 379, 405, 762, 828
BmrFI	CCNGG	5 cut(s)	93, 339, 535, 653, 766
BmsI	GCATC	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	635
Bpu10I	CCTNAGC	1 cut(s)	783
BpuMI	CCSGG	3 cut(s)	93, 339, 535
BsaJI	CCNNGG	5 cut(s)	91, 534, 764, 765, 1008
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 289, 344
Bse118I	RCCGGY	2 cut(s)	225, 705
Bse1I	ACTGG	2 cut(s)	349, 451
BseBI	CCWGG	2 cut(s)	653, 766
BseDI	CCNNGG	5 cut(s)	91, 534, 764, 765, 1008
BseGI	GGATG	1 cut(s)	530
BseLI	CCNNNNNNNGG	3 cut(s)	225, 289, 344
BseMII	CTCAG	4 cut(s)	21, 797, 858, 957
BseNI	ACTGG	2 cut(s)	349, 451
BseRI	GAGGAG	3 cut(s)	174, 177, 671
BseXI	GCAGC	3 cut(s)	280, 787, 1014
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	976
BshFI	GGCC	3 cut(s)	225, 249, 709
BshNI	GGYRCC	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	976
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	5 cut(s)	93, 226, 339, 534, 706
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	3 cut(s)	225, 289, 344
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	746
BsnI	GGCC	3 cut(s)	225, 249, 709
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	403, 739
BspACI	CCGC	8 cut(s)	44, 74, 156, 207, 235, 296, 691, 913
BspANI	GGCC	3 cut(s)	225, 249, 709
BspCNI	CTCAG	4 cut(s)	20, 796, 857, 956
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	6 cut(s)	230, 337, 379, 405, 762, 828
BspMI	ACCTGC	1 cut(s)	988
BspPI	GGATC	3 cut(s)	398, 411, 734
BspQI	GCTCTTC	1 cut(s)	993
BspT107I	GGYRCC	1 cut(s)	377
BsrBI	CCGCTC	1 cut(s)	209
BsrFI	RCCGGY	2 cut(s)	225, 705
BsrI	ACTGG	2 cut(s)	349, 451
BssAI	RCCGGY	2 cut(s)	225, 705
BssECI	CCNNGG	5 cut(s)	91, 534, 764, 765, 1008
BssMI	GATC	2 cut(s)	403, 739
Bst2UI	CCWGG	2 cut(s)	653, 766
Bst4CI	ACNGT	2 cut(s)	385, 837
Bst6I	CTCTTC	1 cut(s)	993
BstC8I	GCNNGC	3 cut(s)	130, 251, 390
BstDEI	CTNAG	4 cut(s)	7, 783, 844, 943
BstDSI	CCRYGG	1 cut(s)	1008
BstF5I	GGATG	1 cut(s)	530
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	4 cut(s)	79, 98, 134, 442
BstKTI	GATC	2 cut(s)	406, 742
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	2 cut(s)	403, 739
BstMCI	CGRYCG	1 cut(s)	976
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	2 cut(s)	653, 766
BstNSI	RCATGY	2 cut(s)	262, 554
BstSCI	CCNGG	5 cut(s)	91, 337, 533, 651, 764
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	3 cut(s)	280, 787, 1014
BstX2I	RGATCY	2 cut(s)	403, 739
BstYI	RGATCY	2 cut(s)	403, 739
BsuI	GTATCC	1 cut(s)	849
BsuRI	GGCC	3 cut(s)	225, 249, 709
BtgI	CCRYGG	1 cut(s)	1008
BtrI	CACGTC	1 cut(s)	987
BtsCI	GGATG	1 cut(s)	530
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	1 cut(s)	988
Cac8I	GCNNGC	3 cut(s)	130, 251, 390
CaiI	CAGNNNCTG	1 cut(s)	743
CfoI	GCGC	4 cut(s)	79, 98, 134, 442
Cfr10I	RCCGGY	2 cut(s)	225, 705
Cfr13I	GGNCC	2 cut(s)	335, 760
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	3 cut(s)	259, 412, 551
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	4 cut(s)	7, 783, 844, 943
DpnI	GATC	2 cut(s)	405, 741
DpnII	GATC	2 cut(s)	403, 739
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	993
EarI	CTCTTC	1 cut(s)	993
EciI	GGCGGA	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	335, 760
Eco57I	CTGAAG	4 cut(s)	321, 654, 842, 908
EcoO109I	RGGNCCY	1 cut(s)	760
EcoRI	GAATTC	2 cut(s)	746, 880
EcoRII	CCWGG	2 cut(s)	651, 764
FaeI	CATG	3 cut(s)	262, 415, 554
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	3 cut(s)	258, 411, 550
FauI	CCCGC	2 cut(s)	51, 242
FauNDI	CATATG	2 cut(s)	501, 932
FblI	GTMKAC	1 cut(s)	976
Fnu4HI	GCNGC	5 cut(s)	75, 294, 297, 801, 1028
FokI	GGATG	1 cut(s)	517
Fsp4HI	GCNGC	5 cut(s)	75, 294, 297, 801, 1028
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	4 cut(s)	78, 97, 133, 441
GluI	GCNGC	5 cut(s)	75, 294, 297, 801, 1028
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	3 cut(s)	225, 249, 709
HapII	CCGG	5 cut(s)	93, 226, 339, 534, 706
HhaI	GCGC	4 cut(s)	79, 98, 134, 442
Hin1II	CATG	3 cut(s)	262, 415, 554
Hin6I	GCGC	4 cut(s)	77, 96, 132, 440
HinP1I	GCGC	4 cut(s)	77, 96, 132, 440
HincII	GTYRAC	1 cut(s)	977
HindII	GTYRAC	1 cut(s)	977
HindIII	AAGCTT	1 cut(s)	862
HinfI	GANTC	2 cut(s)	266, 527
HpaII	CCGG	5 cut(s)	93, 226, 339, 534, 706
HphI	GGTGA	4 cut(s)	23, 326, 632, 889
Hpy166II	GTNNAC	1 cut(s)	977
Hpy188I	TCNGA	5 cut(s)	271, 634, 700, 739, 946
Hpy188III	TCNNGA	2 cut(s)	743, 990
Hpy8I	GTNNAC	1 cut(s)	977
HpyAV	CCTTC	3 cut(s)	305, 451, 817
HpyCH4III	ACNGT	2 cut(s)	385, 837
HpyCH4IV	ACGT	2 cut(s)	792, 986
HpyCH4V	TGCA	3 cut(s)	466, 936, 1030
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	4 cut(s)	7, 783, 844, 943
HpySE526I	ACGT	2 cut(s)	792, 986
Hsp92II	CATG	3 cut(s)	262, 415, 554
HspAI	GCGC	4 cut(s)	77, 96, 132, 440
Kzo9I	GATC	2 cut(s)	403, 739
LguI	GCTCTTC	1 cut(s)	993
Lsp1109I	GCAGC	3 cut(s)	280, 787, 1014
LweI	GCATC	1 cut(s)	787
MaeII	ACGT	2 cut(s)	792, 986
MaeIII	GTNAC	2 cut(s)	620, 1042
MalI	GATC	2 cut(s)	405, 741
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	2 cut(s)	403, 739
MboII	GAAGA	8 cut(s)	11, 14, 180, 183, 602, 619, 712, 1010
MflI	RGATCY	2 cut(s)	403, 739
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	5 cut(s)	330, 727, 746, 752, 880
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	2 cut(s)	260, 536
MmeI	TCCRAC	1 cut(s)	243
Mox20I	TGGCCA	1 cut(s)	249
MroXI	GAANNNNTTC	2 cut(s)	346, 639
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	4 cut(s)	579, 756, 810, 891
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	5 cut(s)	93, 226, 339, 534, 706
MspR9I	CCNGG	5 cut(s)	93, 339, 535, 653, 766
MvaI	CCWGG	2 cut(s)	653, 766
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	93
NciI	CCSGG	3 cut(s)	93, 339, 535
NdeI	CATATG	2 cut(s)	501, 932
NdeII	GATC	2 cut(s)	403, 739
NlaIII	CATG	3 cut(s)	262, 415, 554
NlaIV	GGNNCC	6 cut(s)	230, 337, 379, 405, 762, 828
NmuCI	GTSAC	2 cut(s)	620, 1042
NsbI	TGCGCA	1 cut(s)	441
NspI	RCATGY	2 cut(s)	262, 554
PasI	CCCWGGG	1 cut(s)	765
PciI	ACATGT	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	993
PdmI	GAANNNNTTC	2 cut(s)	346, 639
PflFI	GACNNNGTC	1 cut(s)	476
PflMI	CCANNNNNTGG	1 cut(s)	289
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	5 cut(s)	76, 295, 298, 802, 1029
PleI	GAGTC	2 cut(s)	260, 535
PpsI	GAGTC	2 cut(s)	260, 535
PpuMI	RGGWCCY	1 cut(s)	760
PscI	ACATGT	1 cut(s)	258
Psp1406I	AACGTT	1 cut(s)	792
Psp5II	RGGWCCY	1 cut(s)	760
Psp6I	CCWGG	2 cut(s)	651, 764
PspGI	CCWGG	2 cut(s)	651, 764
PspN4I	GGNNCC	6 cut(s)	230, 337, 379, 405, 762, 828
PspPI	GGNCC	2 cut(s)	335, 760
PspPPI	RGGWCCY	1 cut(s)	760
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	2 cut(s)	403, 739
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
SalI	GTCGAC	1 cut(s)	975
SapI	GCTCTTC	1 cut(s)	993
SaqAI	TTAA	4 cut(s)	579, 756, 810, 891
SatI	GCNGC	5 cut(s)	75, 294, 297, 801, 1028
Sau3AI	GATC	2 cut(s)	403, 739
Sau96I	GGNCC	2 cut(s)	335, 760
SchI	GAGTC	2 cut(s)	260, 536
ScrFI	CCNGG	5 cut(s)	93, 339, 535, 653, 766
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	1 cut(s)	787
SinI	GGWCC	2 cut(s)	335, 760
Sse9I	AATT	5 cut(s)	330, 727, 746, 752, 880
SsiI	CCGC	8 cut(s)	44, 74, 156, 207, 235, 296, 691, 913
StyD4I	CCNGG	5 cut(s)	91, 337, 533, 651, 764
TaaI	ACNGT	2 cut(s)	385, 837
TaiI	ACGT	2 cut(s)	795, 989
TaqI	TCGA	4 cut(s)	107, 396, 854, 976
TaqII	GACCGA	1 cut(s)	962
TasI	AATT	5 cut(s)	330, 727, 746, 752, 880
TatI	WGTACW	1 cut(s)	587
TauI	GCSGC	2 cut(s)	77, 299
Tru1I	TTAA	4 cut(s)	579, 756, 810, 891
Tru9I	TTAA	4 cut(s)	579, 756, 810, 891
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	620, 1042
TseI	GCWGC	3 cut(s)	293, 800, 1027
Tsp45I	GTSAC	2 cut(s)	620, 1042
TspDTI	ATGAA	3 cut(s)	17, 482, 712
TspGWI	ACGGA	1 cut(s)	1025
TspRI	CASTG	1 cut(s)	388
Tth111I	GACNNNGTC	1 cut(s)	476
Van91I	CCANNNNNTGG	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	335, 760
XapI	RAATTY	3 cut(s)	746, 752, 880
XceI	RCATGY	2 cut(s)	262, 554
XmiI	GTMKAC	1 cut(s)	976
XmnI	GAANNNNTTC	2 cut(s)	346, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.