Rh1AG240400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016201
Physical Location & Seq
Reverse (-)
45114854 .. 45115354
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG240400.1

Sequence Viewer

Length: 501 bp
ATGGACTCCATGGATGAGGCGGAGTCAGAACCGCCGCCGCCGTCACTACCACCACTATCAAACCTTATTCTCTCCCTTGAACAAGCAACCCTCATGGCCAAGCAGCTCCCTTCCACCTCCGACCCAACTCACCTCCTCCACATCCACTCCTCCCTCCACCAAGCCCACCACCACCTCTCCACCTTCCTCTCCACAACCCGCATCCCCCAGCCGCCTCCCGCCGCCGAGAACTCCCTCTCCTCCGCCACCGGCAACGATCCGATGGACTTCGGCGGCGATGAGGAGAATTCCAAGAGCACAATTGAGAGGGTGGAGGAGCAGATGAGGGGCTGCTTCATTAAGAATAAGAGGGGGAGGAAGAGGCAGCTTTCGCCTTCTGCGGCGGCCGTGGCGGAGGAGAGACGGCTCAATGGTGATGGGCTTGTGGGGAATGTGGTGGGTTTTGATCCTCATGAAACCAGGTCGAGGGCATTGGAGCTCGTGTACCAGTTTCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.24

Weight (kDa)

5.67

Isoelectric Point (pI)

61.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01840
malus_domestica MD07G1128600.v1.1
prunus_persica Prupe.2G154500_v2.0.a1
pyrus_communis pycom01g07660 pycom01g07700 pycom07g12440
rosa_chinensis RchiOBHm_Chr1g0352211
rosa_laevigata RLG00000028347
rosa_multiflora Rmu_sc0011915.1_g000008
rosa_roxburghii Rroxscaffold_4G00303080
rosa_rugosa Rorug01G0226100
rosa_samantha Rh1AG240400 Rh1BG211300 Rh1DG237800
rosa_wichuraiana Rw1G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 251, 440
AcoI YGGCCR 2 cut(s) 96, 384
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 1 cut(s) 465
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 458
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 3 cut(s) 106, 367, 478
AluI AGCT 3 cut(s) 106, 367, 478
Alw21I GWGCWC 2 cut(s) 299, 480
Alw26I GTCTC 1 cut(s) 394
AlwI GGATC 2 cut(s) 251, 440
AoxI GGCC 2 cut(s) 96, 384
ApeKI GCWGC 3 cut(s) 103, 330, 364
ApoI RAATTY 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 122, 425
BalI TGGCCA 1 cut(s) 98
BanII GRGCYC 1 cut(s) 480
BauI CACGAG 1 cut(s) 479
Bbv12I GWGCWC 2 cut(s) 299, 480
BbvI GCAGC 3 cut(s) 115, 317, 376
BccI CCATC 2 cut(s) 256, 410
BceAI ACGGC 3 cut(s) 25, 371, 419
BciT130I CCWGG 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 460
BmsI GCATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 9, 387
BsaXI ACNNNNNCTCC 8 cut(s) 131, 161, 161, 191, 221, 251, 467, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 465
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 487
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 2 cut(s) 9, 387
BseGI GGATG 3 cut(s) 19, 141, 201
BseLI CCNNNNNNNGG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 6 cut(s) 125, 139, 229, 296, 329, 410
BseX3I CGGCCG 1 cut(s) 384
BseXI GCAGC 3 cut(s) 115, 317, 376
BseYI CCCAGC 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 2 cut(s) 98, 386
BsiEI CGRYCG 1 cut(s) 387
BsiHKAI GWGCWC 2 cut(s) 299, 480
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 465
BsmAI GTCTC 1 cut(s) 394
BsmBI CGTCTC 1 cut(s) 394
BsnI GGCC 2 cut(s) 98, 386
Bsp1286I GDGCHC 2 cut(s) 299, 480
Bsp143I GATC 2 cut(s) 256, 445
Bsp19I CCATGG 1 cut(s) 9
BspANI GGCC 2 cut(s) 98, 386
BspHI TCATGA 1 cut(s) 451
BspPI GGATC 2 cut(s) 251, 440
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 487
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 9, 387
BssMI GATC 2 cut(s) 256, 445
BssSI CACGAG 1 cut(s) 479
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 1 cut(s) 460
Bst6I CTCTTC 1 cut(s) 353
BstDSI CCRYGG 2 cut(s) 9, 387
BstF5I GGATG 3 cut(s) 19, 141, 201
BstKTI GATC 2 cut(s) 259, 448
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 2 cut(s) 256, 445
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 2 cut(s) 370, 389
BstNI CCWGG 1 cut(s) 460
BstSCI CCNGG 1 cut(s) 458
BstV1I GCAGC 3 cut(s) 115, 317, 376
BstZI CGGCCG 1 cut(s) 384
BsuRI GGCC 2 cut(s) 98, 386
BtgI CCRYGG 2 cut(s) 9, 387
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 19, 141, 201
CciI TCATGA 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 248
CsiI ACCWGGT 1 cut(s) 458
Csp6I GTAC 1 cut(s) 484
CviAII CATG 3 cut(s) 10, 94, 452
CviQI GTAC 1 cut(s) 484
DpnI GATC 2 cut(s) 258, 447
DpnII GATC 2 cut(s) 256, 445
EaeI YGGCCR 2 cut(s) 96, 384
EagI CGGCCG 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 3 cut(s) 35, 232, 407
Ecl136II GAGCTC 1 cut(s) 478
EclXI CGGCCG 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 480
Eco52I CGGCCG 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 478
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 3 cut(s) 13, 97, 455
FaiI YATR 3 cut(s) 11, 95, 453
FatI CATG 3 cut(s) 9, 93, 451
FauI CCCGC 2 cut(s) 206, 226
FokI GGATG 3 cut(s) 26, 128, 188
FriOI GRGCYC 1 cut(s) 480
GsaI CCCAGC 1 cut(s) 211
HaeIII GGCC 2 cut(s) 98, 386
HapII CCGG 1 cut(s) 249
Hin1II CATG 3 cut(s) 13, 97, 455
HinfI GANTC 2 cut(s) 5, 23
HpaII CCGG 1 cut(s) 249
HphI GGTGA 2 cut(s) 122, 425
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 3 cut(s) 28, 121, 261
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 3 cut(s) 120, 193, 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 370, 389
Hsp92II CATG 3 cut(s) 13, 97, 455
Kzo9I GATC 2 cut(s) 256, 445
LmnI GCTCC 3 cut(s) 111, 316, 475
LpnPI CCDG 4 cut(s) 221, 262, 445, 472
Lsp1109I GCAGC 3 cut(s) 115, 317, 376
LweI GCATC 1 cut(s) 210
MabI ACCWGGT 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 42
MalI GATC 2 cut(s) 258, 447
MboI GATC 2 cut(s) 256, 445
MboII GAAGA 1 cut(s) 370
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 2 cut(s) 299, 480
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 2 cut(s) 286, 300
MluNI TGGCCA 1 cut(s) 98
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 98
MscI TGGCCA 1 cut(s) 98
MseI TTAA 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 98
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 460
MunI CAATTG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 460
MwoI GCNNNNNNNGC 2 cut(s) 370, 389
NcoI CCATGG 1 cut(s) 9
NdeII GATC 2 cut(s) 256, 445
NlaIII CATG 3 cut(s) 13, 97, 455
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 42
PagI TCATGA 1 cut(s) 451
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 1 cut(s) 458
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 339
Sau3AI GATC 2 cut(s) 256, 445
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 460
SduI GDGCHC 2 cut(s) 299, 480
SetI ASST 9 cut(s) 66, 108, 119, 135, 177, 185, 369, 464, 480
SexAI ACCWGGT 1 cut(s) 458
SfaNI GCATC 1 cut(s) 210
Sse9I AATT 2 cut(s) 286, 300
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 458
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 1 cut(s) 464
TasI AATT 2 cut(s) 286, 300
TauI GCSGC 7 cut(s) 37, 40, 214, 224, 276, 383, 386
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 3 cut(s) 103, 330, 364
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 325, 468, 482
XapI RAATTY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.