Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008931

Physical Location & Seq

Genomic Coordinates Forward (+)

20341263 .. 20342774

Gene Structure 1512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1140000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCAAACGCAGCGTCTGGAATGGCTGTGCACGATGATTGTAAGCTCAAATTCTTGGAACTAAAAGCGAAGAGAAATTTCCGATTTATTGTGTTCAAGATCGAGGAGAAGATACAACAGGTGATTGTAGAGAAGCTAGGAGGTCCTGATGAAAGCTACGATGATTTCAGTGCCTCCTTGCCTGCCGATGAGTGCCGCTATGCCGTTTATGATTTTGATTTTACAACCAATGAGAACTGCCAGAAAAGCAAAATATTCTTCATTGCATGGGCACCTGATACATCGAGGGTCAGAAGTAAGATGCTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAGTTGGAAGGCATTCAAGTGGAGTTGCAGGCTACAGATCCTAGTGAGATGAGCTTGGATATCATAAAAGGCCGGGCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0008154 GO:0009987 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0032984 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

140

Amino Acids

15.92

Weight (kDa)

5.51

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	7 - 137	3e-42	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01750 AT1G01750
fragaria_vesca	FvH4_7g13880 FvH4_7g13880
malus_domestica	MD01G1055300.v1.1 MD07G1140000.v1.1
prunus_persica	Prupe.2G165300_v2.0.a1 Prupe.2G165300_v2.0.a1
pyrus_communis	pycom01g08070 pycom07g13800
rosa_chinensis	RchiOBHm_Chr1g0354101
rosa_laevigata	RLG00000028226
rosa_multiflora	Rmu_sc0004632.1_g000010 Rmu_sc0020013.1_g000001
rosa_rugosa	Rorug01G0241300 Rorug01G0241400 Rorug01G0241500
rosa_samantha	Rh1AG252200 Rh1BG224100 Rh1CG236600 Rh1DG251100
rosa_wichuraiana	Rw1G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	2 cut(s)	50, 76
AgsI	TTSAA	3 cut(s)	97, 331, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	5 cut(s)	46, 136, 156, 315, 390
AluI	AGCT	5 cut(s)	46, 136, 156, 315, 390
Alw21I	GWGCWC	1 cut(s)	33
Alw44I	GTGCAC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	406
ApaLI	GTGCAC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	50, 76
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	3 cut(s)	33, 274, 415
BanI	GGYRCC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	410
BfaI	CTAG	2 cut(s)	137, 378
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	2 cut(s)	12, 196
BlsI	GCNGC	2 cut(s)	13, 197
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	3 cut(s)	33, 274, 415
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	408
Bsp1286I	GDGCHC	3 cut(s)	33, 274, 415
Bsp143I	GATC	2 cut(s)	99, 373
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	99, 373
BssT1I	CCWWGG	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	183, 313, 366
BstKTI	GATC	2 cut(s)	102, 376
BstMBI	GATC	2 cut(s)	99, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 246
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	3 cut(s)	33, 274, 415
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	3 cut(s)	183, 313, 366
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	1 cut(s)	3
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	8 cut(s)	26, 46, 136, 156, 315, 368, 390, 408
CviKI_1	RGCY	8 cut(s)	26, 46, 136, 156, 315, 368, 390, 408
DpnI	GATC	2 cut(s)	101, 375
DpnII	GATC	2 cut(s)	99, 373
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	270
FaiI	YATR	5 cut(s)	201, 210, 268, 309, 401
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	12, 196
Fsp4HI	GCNGC	2 cut(s)	12, 196
FspBI	CTAG	2 cut(s)	137, 378
GluI	GCNGC	2 cut(s)	12, 196
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	1 cut(s)	409
HgaI	GACGC	1 cut(s)	3
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	83, 293, 419
Hpy188III	TCNNGA	4 cut(s)	18, 97, 146, 331
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	338
HpyCH4V	TGCA	4 cut(s)	31, 266, 311, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 246
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	99, 373
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	7 cut(s)	3, 104, 159, 195, 254, 288, 350
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	137, 378
MalI	GATC	2 cut(s)	101, 375
MboI	GATC	2 cut(s)	99, 373
MboII	GAAGA	3 cut(s)	82, 121, 250
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	3 cut(s)	33, 274, 415
MluCI	AATT	2 cut(s)	50, 76
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	5 cut(s)	97, 134, 184, 279, 327
MroXI	GAANNNNTTC	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	11, 246
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	2 cut(s)	99, 373
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	273
PctI	GAATGC	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	13, 197
PpuMI	RGGWCCY	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	143
PspPPI	RGGWCCY	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	353
SatI	GCNGC	2 cut(s)	12, 196
Sau3AI	GATC	2 cut(s)	99, 373
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	3 cut(s)	33, 274, 415
SetI	ASST	8 cut(s)	48, 123, 138, 145, 158, 277, 317, 392
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	2 cut(s)	50, 76
SsiI	CCGC	1 cut(s)	196
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	2 cut(s)	137, 378
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	2 cut(s)	102, 284
TasI	AATT	2 cut(s)	50, 76
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	327
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	165, 250
TspRI	CASTG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	50, 76
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	137, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.