Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008931

Physical Location & Seq

Genomic Coordinates Forward (+)

20317554 .. 20321976

Gene Structure 4423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028226

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGACGAGACTGAACCCGACGTTGTTTCTCATGCGCCATCCAGGACGTGCACCGCTGTCACCTTCGTCCTCGGCAAGAGGGGTCTCGAGCTTGGATCCCTCAGCTGCACCCAAGTCGAACTCCGCGTCTGGAATGGCTGTGCATGATGATTGTAAGCTCAAGTTCTTGGAACTGAAAGCGAAGAGGAACCACCGATTCATTGTGTTCAAGATTGAGGAGAAGATACAACAGGTGATTGTAGAGAAGCTTGGAGGTCCTGAAGAAAGCTACGAGGACTTCACTAACTCCATACCTGCTGATGAGTGCCGCTATGCTGTCTATGATTTTGATTTCACAACCGATGAGAACTGCCAAAAAAGCAAAATCTTCTTCATTGCATGGTCACCTGATACGTCAAGGGTGAGAAGTAAGATGCTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGCATTCAAGTGGAGTTGCAGGCAACAGATCCTAGTGAGATGAGTTTGGATATCATAAAAGGCCGAGCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0008154 GO:0009987 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0032984 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

177

Amino Acids

19.88

Weight (kDa)

7.7

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	44 - 174	1.5e-42	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01750 AT1G01750
fragaria_vesca	FvH4_7g13880 FvH4_7g13880
malus_domestica	MD01G1055300.v1.1 MD07G1140000.v1.1
prunus_persica	Prupe.2G165300_v2.0.a1 Prupe.2G165300_v2.0.a1
pyrus_communis	pycom01g08070 pycom07g13800
rosa_chinensis	RchiOBHm_Chr1g0354101
rosa_laevigata	RLG00000028226
rosa_multiflora	Rmu_sc0004632.1_g000010 Rmu_sc0020013.1_g000001
rosa_rugosa	Rorug01G0241300 Rorug01G0241400 Rorug01G0241500
rosa_samantha	Rh1AG252200 Rh1BG224100 Rh1CG236600 Rh1DG251100
rosa_wichuraiana	Rw1G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
AccII	CGCG	1 cut(s)	125
AciI	CCGC	3 cut(s)	53, 123, 307
AclWI	GGATC	3 cut(s)	89, 102, 479
AcuI	CTGAAG	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	208, 442, 464
AjiI	CACGTC	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	6 cut(s)	90, 104, 157, 247, 267, 426
AluI	AGCT	6 cut(s)	90, 104, 157, 247, 267, 426
Alw21I	GWGCWC	2 cut(s)	52, 526
Alw26I	GTCTC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	48
AlwI	GGATC	3 cut(s)	89, 102, 479
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	517
ApaLI	GTGCAC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	104
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	4 cut(s)	51, 244, 375, 412
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	52, 526
BbvCI	CCTCAGC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	2 cut(s)	45, 449
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	2 cut(s)	105, 307
BlsI	GCNGC	2 cut(s)	106, 308
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	96, 188
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	69, 429
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	69, 429
BseGI	GGATG	2 cut(s)	37, 460
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	519
BsiHKAI	GWGCWC	2 cut(s)	52, 526
BsiHKCI	CYCGRG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	519
Bso31I	GGTCTC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	52, 526
Bsp143I	GATC	2 cut(s)	94, 484
BspACI	CCGC	3 cut(s)	53, 123, 307
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	96, 188
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	3 cut(s)	89, 102, 479
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	69, 429
BssMI	GATC	2 cut(s)	94, 484
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	424, 477
BstDEI	CTNAG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	37, 460
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	2 cut(s)	97, 487
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	94, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstNI	CCWGG	1 cut(s)	42
BstPI	GGTNACC	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	94, 484
BstYI	RGATCY	2 cut(s)	94, 484
BsuRI	GGCC	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	37, 460
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	424, 477
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	114
CviAII	CATG	3 cut(s)	31, 143, 378
CviJI	RGCY	8 cut(s)	90, 104, 137, 157, 247, 267, 426, 519
CviKI_1	RGCY	8 cut(s)	90, 104, 137, 157, 247, 267, 426, 519
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	2 cut(s)	96, 486
DpnII	GATC	2 cut(s)	94, 484
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	3 cut(s)	34, 146, 381
FaiI	YATR	8 cut(s)	32, 144, 290, 312, 321, 379, 420, 512
FatI	CATG	3 cut(s)	30, 142, 377
Fnu4HI	GCNGC	2 cut(s)	105, 307
FokI	GGATG	2 cut(s)	24, 467
Fsp4HI	GCNGC	2 cut(s)	105, 307
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	105, 307
HaeIII	GGCC	1 cut(s)	519
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	34, 146, 381
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	2 cut(s)	195, 438
HphI	GGTGA	4 cut(s)	51, 244, 375, 412
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188III	TCNNGA	5 cut(s)	85, 129, 208, 257, 442
Hpy8I	GTNNAC	1 cut(s)	50
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	72
HpyCH4IV	ACGT	3 cut(s)	20, 46, 392
HpyCH4V	TGCA	6 cut(s)	50, 107, 142, 377, 422, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	1 cut(s)	100
HpySE526I	ACGT	3 cut(s)	20, 46, 392
Hsp92II	CATG	3 cut(s)	34, 146, 381
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	94, 484
LmnI	GCTCC	1 cut(s)	431
LpnPI	CCDG	8 cut(s)	27, 54, 114, 215, 270, 306, 399, 461
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	3 cut(s)	20, 46, 392
MaeIII	GTNAC	2 cut(s)	57, 381
MalI	GATC	2 cut(s)	96, 486
MboI	GATC	2 cut(s)	94, 484
MboII	GAAGA	5 cut(s)	193, 232, 272, 358, 361
MflI	RGATCY	2 cut(s)	94, 484
MhlI	GDGCHC	2 cut(s)	52, 526
MluCI	AATT	1 cut(s)	449
MnlI	CCTC	8 cut(s)	71, 79, 109, 177, 208, 245, 265, 438
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	2 cut(s)	55, 104
MspR9I	CCNGG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	357
NdeII	GATC	2 cut(s)	94, 484
NlaIII	CATG	3 cut(s)	34, 146, 381
NlaIV	GGNNCC	2 cut(s)	96, 188
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	57, 381
PaeR7I	CTCGAG	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	195, 438
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	106, 308
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	96, 188
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	94, 484
PvuII	CAGCTG	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	464
SatI	GCNGC	2 cut(s)	105, 307
Sau3AI	GATC	2 cut(s)	94, 484
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	2 cut(s)	52, 526
SfaNI	GCATC	1 cut(s)	402
Sfr274I	CTCGAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	85, 158
SmoI	CTYRAG	2 cut(s)	85, 158
Sse9I	AATT	1 cut(s)	449
SsiI	CCGC	3 cut(s)	53, 123, 307
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	429
TaiI	ACGT	3 cut(s)	23, 49, 395
TaqI	TCGA	2 cut(s)	86, 116
TasI	AATT	1 cut(s)	449
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	195, 438
TseFI	GTSAC	2 cut(s)	57, 381
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	2 cut(s)	57, 381
TspDTI	ATGAA	2 cut(s)	187, 361
VneI	GTGCAC	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	85
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.