pycom01g08070

Belongs to the actin-binding proteins ADF family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
9055036 .. 9056491
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g08070.3

Sequence Viewer

Length: 420 bp
ATGGCAAACGCGGCGTCTGGAATGGCTGTGCATGATGATTGTAAGCTCAAGTTCTTAGAACTAAAAGCGAAGAGAAATTTCCGATTTATTGTGTTCAAGATCGAGCAGAAGATACAACAGGTGATTGTAGAGAAGCTTGGAGGTCCTTACGAAAGCTACGATGATTTCAGTGCCTCCATGCCTGCCGATGAGTGCCGCTATGCCGTCTATGATTTTGATTTTACAACCAATGAGAACTGCCAGAAAAGCAAAATATTCTTCATTGCATGGGCACCTGATACATCAAGGGTGAGAAGTAAGATGCTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAGTTGGAAGGCATTCAAGTGGAGTTGCAGGCAACAGATCCTAGTGAGATGAGCTTGGATATCATAAAAGGGCGGGCGCTCTAA

Protein Analysis

140

Amino Acids

15.98

Weight (kDa)

6.59

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 271
AccII CGCG 1 cut(s) 11
AciI CCGC 3 cut(s) 11, 196, 409
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 14
AgsI TTSAA 3 cut(s) 97, 331, 353
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 5 cut(s) 46, 136, 156, 315, 390
AluI AGCT 5 cut(s) 46, 136, 156, 315, 390
AlwI GGATC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 76
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 133, 301
AvaII GGWCC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 271
BceAI ACGGC 1 cut(s) 188
BfaI CTAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 416
BisI GCNGC 2 cut(s) 12, 196
BlsI GCNGC 2 cut(s) 13, 197
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 273
BmsI GCATC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 318
BseMI GCAATG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 271
BsmI GAATGC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 99, 373
BspACI CCGC 3 cut(s) 11, 196, 409
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 2 cut(s) 99, 373
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 318
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 183, 313, 366, 411
BstDEI CTNAG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 2 cut(s) 102, 376
BstMBI GATC 2 cut(s) 99, 373
BstMWI GCNNNNNNNGC 2 cut(s) 11, 246
BstSLI GKGCMC 1 cut(s) 274
BstUI CGCG 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 4 cut(s) 183, 313, 366, 411
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 143
CseI GACGC 1 cut(s) 3
CviAII CATG 3 cut(s) 32, 178, 267
CviJI RGCY 6 cut(s) 26, 46, 136, 156, 315, 390
CviKI_1 RGCY 6 cut(s) 26, 46, 136, 156, 315, 390
DdeI CTNAG 1 cut(s) 55
DpnI GATC 2 cut(s) 101, 375
DpnII GATC 2 cut(s) 99, 373
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 318
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 143
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 3 cut(s) 35, 181, 270
FaiI YATR 7 cut(s) 33, 179, 201, 210, 268, 309, 401
FatI CATG 3 cut(s) 31, 177, 266
FauI CCCGC 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 12, 196
Fsp4HI GCNGC 2 cut(s) 12, 196
FspBI CTAG 1 cut(s) 378
GlaI GCGC 1 cut(s) 414
GluI GCNGC 2 cut(s) 12, 196
HaeII RGCGCY 1 cut(s) 416
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 3 cut(s) 35, 181, 270
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 1 cut(s) 327
HphI GGTGA 2 cut(s) 133, 301
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 3 cut(s) 18, 97, 331
HpyAV CCTTC 1 cut(s) 338
HpyCH4V TGCA 4 cut(s) 31, 266, 311, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 246
HpyF3I CTNAG 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 3 cut(s) 35, 181, 270
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 2 cut(s) 99, 373
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 6 cut(s) 3, 104, 195, 254, 288, 350
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 378
MalI GATC 2 cut(s) 101, 375
MboI GATC 2 cut(s) 99, 373
MboII GAAGA 3 cut(s) 82, 121, 250
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 3 cut(s) 134, 184, 327
MroXI GAANNNNTTC 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 348
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 11, 246
NdeII GATC 2 cut(s) 99, 373
NlaIII CATG 3 cut(s) 35, 181, 270
NlaIV GGNNCC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 2 cut(s) 13, 197
PpuMI RGGWCCY 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 143
PspPPI RGGWCCY 1 cut(s) 143
PsuI RGATCY 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 353
SatI GCNGC 2 cut(s) 12, 196
Sau3AI GATC 2 cut(s) 99, 373
Sau96I GGNCC 1 cut(s) 143
SduI GDGCHC 1 cut(s) 274
SetI ASST 8 cut(s) 48, 123, 138, 145, 158, 277, 317, 392
SfaNI GCATC 1 cut(s) 291
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 76
SsiI CCGC 3 cut(s) 11, 196, 409
SspI AATATT 1 cut(s) 255
SspMI CTAG 1 cut(s) 378
StyI CCWWGG 1 cut(s) 318
TaqI TCGA 1 cut(s) 102
TasI AATT 1 cut(s) 76
TauI GCSGC 2 cut(s) 14, 198
TfiI GAWTC 1 cut(s) 327
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.