Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004632.1

Orthogroup ID

OG0008931

Physical Location & Seq

Genomic Coordinates Reverse (-)

74404 .. 75149

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004632.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggctgtgcatgatgattgtaagctcaagttcttggaactgaaagcgaagaggaaccaccgattcattgtgttcaagattgaggagaagatacaacaggtgattgtagagaagcttggaggtcctgatgaaagctacgaggacttcactaactccatacctgctgatgagtgccgctatgctgtctatgatttcgatttcacaaccgatgagaactgccagaaaagcaaaatcttcttcattgcatggtcgcctgatacgtcgagggtgagaagtaagatgctttatgcaagctccaaggacagattcaagagggaattggatggcattcaagtggagttgcaggcaacagatcctagtgagatgagtttggatatcataaaaggccgagcactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0008154 GO:0009987 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0032984 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

132

Amino Acids

15.38

Weight (kDa)

5.46

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01750 AT1G01750
fragaria_vesca	FvH4_7g13880 FvH4_7g13880
malus_domestica	MD01G1055300.v1.1 MD07G1140000.v1.1
prunus_persica	Prupe.2G165300_v2.0.a1 Prupe.2G165300_v2.0.a1
pyrus_communis	pycom01g08070 pycom07g13800
rosa_chinensis	RchiOBHm_Chr1g0354101
rosa_laevigata	RLG00000028226
rosa_multiflora	Rmu_sc0004632.1_g000010 Rmu_sc0020013.1_g000001
rosa_rugosa	Rorug01G0241300 Rorug01G0241400 Rorug01G0241500
rosa_samantha	Rh1AG252200 Rh1BG224100 Rh1CG236600 Rh1DG251100
rosa_wichuraiana	Rw1G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	76, 310, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	4 cut(s)	25, 115, 135, 294
AluI	AGCT	4 cut(s)	25, 115, 135, 294
Alw21I	GWGCWC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	112, 280
AvaII	GGWCC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	394
BccI	CCATC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	56
BmsI	GCATC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	56
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	292, 345
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	292, 345
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	2 cut(s)	11, 246
CviJI	RGCY	6 cut(s)	5, 25, 115, 135, 294, 387
CviKI_1	RGCY	6 cut(s)	5, 25, 115, 135, 294, 387
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	14, 249
FaiI	YATR	7 cut(s)	12, 158, 180, 189, 247, 288, 380
FatI	CATG	2 cut(s)	10, 245
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	14, 249
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	63, 306
HphI	GGTGA	2 cut(s)	112, 280
Hpy188III	TCNNGA	3 cut(s)	76, 125, 310
Hpy99I	CGWCG	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	4 cut(s)	10, 245, 290, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	14, 249
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	6 cut(s)	83, 138, 174, 233, 267, 329
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	260
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	4 cut(s)	61, 100, 226, 229
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	1 cut(s)	317
MnlI	CCTC	6 cut(s)	45, 76, 113, 133, 258, 306
MslI	CAYNNNNRTG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	2 cut(s)	14, 249
NlaIV	GGNNCC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PctI	GAATGC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	63, 306
PkrI	GCNGC	1 cut(s)	176
PpuMI	RGGWCCY	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	122
PspPPI	RGGWCCY	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	332
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	8 cut(s)	27, 102, 117, 124, 137, 163, 263, 296
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	297
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	195, 263
TasI	AATT	1 cut(s)	317
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	63, 306
TspDTI	ATGAA	3 cut(s)	55, 144, 229
VpaK11BI	GGWCC	1 cut(s)	122
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.