Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020013.1

Orthogroup ID

OG0008931

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1017

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020013.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 451 bp

gctcccttcgatgttgttccaaatttataaagtttcgaactccgcctctggaatggctgtgcatgatgattgtaagctcaagttcttggaactgaaagcgaagaggaaccaccgattcattgtgttcaagattgaggagaagatacaacaggtgattgtagagaagcttggaggtcctgatgaaagctacgaggacttcactaactccatacctgctgatgagtgccgctatgctgtctatgatttcgatttcacaaccgatgagaactgccagaaaagcaaaatcttcttcattgcatggtcgcctgatacgtcgagggtgagaagtaagatgctttatgcaagctccaaggacagattcaagagggaattggatggcattcaagtggagttgcaggcaacagatcctagtgagatgagtttggatatcataaaaggccgagcactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0008154 GO:0009987 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0032984 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

149

Amino Acids

17.2

Weight (kDa)

5.76

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01750 AT1G01750
fragaria_vesca	FvH4_7g13880 FvH4_7g13880
malus_domestica	MD01G1055300.v1.1 MD07G1140000.v1.1
prunus_persica	Prupe.2G165300_v2.0.a1 Prupe.2G165300_v2.0.a1
pyrus_communis	pycom01g08070 pycom07g13800
rosa_chinensis	RchiOBHm_Chr1g0354101
rosa_laevigata	RLG00000028226
rosa_multiflora	Rmu_sc0004632.1_g000010 Rmu_sc0020013.1_g000001
rosa_rugosa	Rorug01G0241300 Rorug01G0241400 Rorug01G0241500
rosa_samantha	Rh1AG252200 Rh1BG224100 Rh1CG236600 Rh1DG251100
rosa_wichuraiana	Rw1G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	221
AciI	CCGC	2 cut(s)	43, 227
AclWI	GGATC	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	128, 362, 384
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	4 cut(s)	77, 167, 187, 346
AluI	AGCT	4 cut(s)	77, 167, 187, 346
Alw21I	GWGCWC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	399
AoxI	GGCC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	164, 332
AsuII	TTCGAA	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	446
BccI	CCATC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	409
BfuAI	ACCTGC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	108
BmsI	GCATC	1 cut(s)	322
Bpu14I	TTCGAA	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	439
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	1 cut(s)	404
BspACI	CCGC	2 cut(s)	43, 227
BspANI	GGCC	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	108
BspMI	ACCTGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	399
BspT104I	TTCGAA	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	344, 397
BstF5I	GGATG	1 cut(s)	380
BstKTI	GATC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	439
BtsCI	GGATG	1 cut(s)	380
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	344, 397
Cfr13I	GGNCC	1 cut(s)	174
CviAII	CATG	2 cut(s)	63, 298
CviJI	RGCY	6 cut(s)	57, 77, 167, 187, 346, 439
CviKI_1	RGCY	6 cut(s)	57, 77, 167, 187, 346, 439
DpnI	GATC	1 cut(s)	406
DpnII	GATC	1 cut(s)	404
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	349
Eco32I	GATATC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	2 cut(s)	66, 301
FaiI	YATR	8 cut(s)	28, 64, 210, 232, 241, 299, 340, 432
FatI	CATG	2 cut(s)	62, 297
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	1 cut(s)	409
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	439
Hin1II	CATG	2 cut(s)	66, 301
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	2 cut(s)	115, 358
HphI	GGTGA	2 cut(s)	164, 332
Hpy188III	TCNNGA	4 cut(s)	49, 128, 177, 362
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	62, 297, 342, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	66, 301
Kzo9I	GATC	1 cut(s)	404
LmnI	GCTCC	2 cut(s)	7, 351
LpnPI	CCDG	7 cut(s)	34, 135, 190, 226, 285, 319, 381
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	409
MaeII	ACGT	1 cut(s)	312
MalI	GATC	1 cut(s)	406
MboI	GATC	1 cut(s)	404
MboII	GAAGA	4 cut(s)	113, 152, 278, 281
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	2 cut(s)	22, 369
MnlI	CCTC	7 cut(s)	56, 97, 128, 165, 185, 310, 358
MslI	CAYNNNNRTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeII	GATC	1 cut(s)	404
NlaIII	CATG	2 cut(s)	66, 301
NlaIV	GGNNCC	1 cut(s)	108
NspV	TTCGAA	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	115, 358
PkrI	GCNGC	1 cut(s)	228
PpuMI	RGGWCCY	1 cut(s)	174
PsiI	TTATAA	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	174
PspPPI	RGGWCCY	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	384
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	404
Sau96I	GGNCC	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	446
SetI	ASST	8 cut(s)	79, 154, 169, 176, 189, 215, 315, 348
SfaNI	GCATC	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	36
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	2 cut(s)	22, 369
SsiI	CCGC	2 cut(s)	43, 227
SspMI	CTAG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	349
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	4 cut(s)	9, 36, 247, 315
TasI	AATT	2 cut(s)	22, 369
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	115, 358
TspDTI	ATGAA	3 cut(s)	107, 196, 281
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	1 cut(s)	22
XspI	CTAG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.