MD07G1195100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017901
Physical Location & Seq
Forward (+)
27425910 .. 27426342
433 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1195100.v1.1.491

Sequence Viewer

Length: 393 bp
ATGATTGGCCCAAACTATTCGAACCGAACGTTGACTTGTTTTGTTCTTTCGGGTCGGAGCGAAAAGACGAATAAAAACGCGGTTCTTCTTCTCCACTTCACTCGCGTTTCGTTTCGTTTCGTTTCAGCTACAGTCCAGCGCTCTCTGACATTGAAGATCTGTTCGCTGCTTCTGCCGTTTTCGCGTTCGATCTTCACCACTGAAGGTACTCTCTCTCTAATGTTTCTGATGAGTTTCCACCTTTATGATTTTTCGAACATGTTAATGGGATCTCGATTTCTCGAACATGATTGTCAATGTAAAACCCTAGAAATTTGGTGTTTTTTTTCCAATTTGTTTTTCTGCGTGAGGAAAGCTACATTTGCAAGGTTGACATTGTTTGTTTTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.05

Weight (kDa)

9.63

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12587
malus_domestica MD01G1125600.v1.1 MD07G1195100.v1.1 MD07G1195400.v1.1
prunus_persica Prupe.2G232600_v2.0.a1 Prupe.2G232600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366451
rosa_multiflora Rmu_ssc0000250.1_g000017
rosa_roxburghii Rroxscaffold_4G00289930 Rroxscaffold_4G00290190
rosa_samantha Rh1DG331100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 80, 105, 184
AciI CCGC 1 cut(s) 80
AclI AACGTT 1 cut(s) 29
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 208
AfeI AGCGCT 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 154
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 3 cut(s) 128, 356, 390
AluI AGCT 3 cut(s) 128, 356, 390
AlwI GGATC 1 cut(s) 277
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 166
ApoI RAATTY 1 cut(s) 312
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 187
AsuII TTCGAA 2 cut(s) 20, 254
BbvI GCAGC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 160
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 142
BglII AGATCT 1 cut(s) 156
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 8
Bpu14I TTCGAA 2 cut(s) 20, 254
BseXI GCAGC 1 cut(s) 153
Bsh1236I CGCG 3 cut(s) 80, 105, 184
BshFI GGCC 1 cut(s) 9
BsnI GGCC 1 cut(s) 9
Bsp119I TTCGAA 2 cut(s) 20, 254
Bsp143I GATC 3 cut(s) 156, 189, 269
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 9
BspFNI CGCG 3 cut(s) 80, 105, 184
BspPI GGATC 1 cut(s) 277
BspT104I TTCGAA 2 cut(s) 20, 254
BssMI GATC 3 cut(s) 156, 189, 269
Bst4CI ACNGT 1 cut(s) 133
BstBI TTCGAA 2 cut(s) 20, 254
BstFNI CGCG 3 cut(s) 80, 105, 184
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 3 cut(s) 159, 192, 272
BstMBI GATC 3 cut(s) 156, 189, 269
BstMWI GCNNNNNNNGC 3 cut(s) 172, 181, 362
BstNSI RCATGY 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 3 cut(s) 80, 105, 184
BstV1I GCAGC 1 cut(s) 153
BstX2I RGATCY 2 cut(s) 156, 269
BstYI RGATCY 2 cut(s) 156, 269
BsuRI GGCC 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 198
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 259, 287
CviJI RGCY 4 cut(s) 9, 128, 356, 390
CviKI_1 RGCY 4 cut(s) 9, 128, 356, 390
CviQI GTAC 1 cut(s) 207
DpnI GATC 3 cut(s) 158, 191, 271
DpnII GATC 3 cut(s) 156, 189, 269
Eco47III AGCGCT 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 222
FaeI CATG 2 cut(s) 262, 290
FaiI YATR 3 cut(s) 246, 260, 288
FatI CATG 2 cut(s) 258, 286
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 167
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 9
HhaI GCGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 262, 290
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 2 cut(s) 33, 372
HindII GTYRAC 2 cut(s) 33, 372
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 33, 372
Hpy188I TCNGA 3 cut(s) 57, 147, 228
Hpy188III TCNNGA 2 cut(s) 273, 281
Hpy8I GTNNAC 2 cut(s) 33, 372
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 181, 362
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 2 cut(s) 262, 290
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 3 cut(s) 156, 189, 269
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 1 cut(s) 149
Lsp1109I GCAGC 1 cut(s) 153
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 29
MalI GATC 3 cut(s) 158, 191, 271
MboI GATC 3 cut(s) 156, 189, 269
MboII GAAGA 4 cut(s) 77, 80, 166, 184
MflI RGATCY 2 cut(s) 156, 269
MluCI AATT 2 cut(s) 312, 331
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 1 cut(s) 342
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 2 cut(s) 243, 263
MvnI CGCG 3 cut(s) 80, 105, 184
MwoI GCNNNNNNNGC 3 cut(s) 172, 181, 362
NdeII GATC 3 cut(s) 156, 189, 269
NlaIII CATG 2 cut(s) 262, 290
NspI RCATGY 1 cut(s) 262
NspV TTCGAA 2 cut(s) 20, 254
PciI ACATGT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PkrI GCNGC 1 cut(s) 168
PscI ACATGT 1 cut(s) 258
Psp1406I AACGTT 1 cut(s) 29
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 2 cut(s) 156, 269
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
RseI CAYNNNNRTG 2 cut(s) 243, 263
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 3 cut(s) 156, 189, 269
Sau96I GGNCC 1 cut(s) 8
SetI ASST 7 cut(s) 32, 130, 208, 243, 358, 371, 392
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 2 cut(s) 20, 254
SmiMI CAYNNNNRTG 2 cut(s) 243, 263
Sse9I AATT 2 cut(s) 312, 331
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 32
TaqI TCGA 5 cut(s) 20, 188, 254, 274, 282
TasI AATT 2 cut(s) 312, 331
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 205
TseI GCWGC 1 cut(s) 166
TspRI CASTG 1 cut(s) 205
XapI RAATTY 1 cut(s) 312
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.