Secretory pathway protein Sec39
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24350 AT5G24350 AT5G24350 |
| fragaria_vesca | FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 |
| malus_domestica | MD01G1225300.v1.1 MD07G1295800.v1.1 |
| prunus_persica | Prupe.2G315300_v2.0.a1 Prupe.2G315300_v2.0.a1 |
| pyrus_communis | pycom01g23370 pycom07g26850 pycom07g26860 |
| rosa_chinensis | RchiOBHm_Chr1g0381961 |
| rosa_laevigata | RLG00000026198 |
| rosa_multiflora | Rmu_sc0010238.1_g000002 Rmu_sc0017430.1_g000002 Rmu_sc0017430.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00278310 |
| rosa_rugosa | Rorug01G0432500 |
| rosa_samantha | Rh1AG455700 Rh1BG412800 Rh1CG427700 Rh1DG445100 |
| rosa_wichuraiana | Rw1G041350 Rw1G041500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 4 cut(s) | 2841, 3195, 4012, 6430 |
| Acc16I | TGCGCA | 1 cut(s) | 6764 |
| Acc36I | ACCTGC | 2 cut(s) | 1680, 2482 |
| AccB1I | GGYRCC | 1 cut(s) | 2740 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3698 |
| AccI | GTMKAC | 4 cut(s) | 2833, 4743, 5118, 5995 |
| AccII | CGCG | 2 cut(s) | 228, 6569 |
| AccIII | TCCGGA | 2 cut(s) | 2233, 7137 |
| AclI | AACGTT | 1 cut(s) | 6737 |
| AcoI | YGGCCR | 5 cut(s) | 2045, 5649, 5700, 5889, 6872 |
| AcuI | CTGAAG | 7 cut(s) | 530, 1619, 2042, 2471, 3327, 4119, 6242 |
| AcvI | CACGTG | 1 cut(s) | 2265 |
| AcyI | GRCGYC | 1 cut(s) | 40 |
| AdeI | CACNNNGTG | 1 cut(s) | 4771 |
| AflII | CTTAAG | 1 cut(s) | 4993 |
| AflIII | ACRYGT | 2 cut(s) | 305, 3295 |
| AgeI | ACCGGT | 1 cut(s) | 1656 |
| AhdI | GACNNNNNGTC | 4 cut(s) | 39, 3648, 5086, 6956 |
| AjiI | CACGTC | 1 cut(s) | 5270 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3762, 3794 |
| AleI | CACNNNNGTG | 1 cut(s) | 4264 |
| Alw21I | GWGCWC | 4 cut(s) | 2591, 3341, 4603, 6039 |
| Alw44I | GTGCAC | 3 cut(s) | 2587, 4599, 6035 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1862, 2855 |
| Ama87I | CYCGRG | 1 cut(s) | 4482 |
| Aor13HI | TCCGGA | 2 cut(s) | 2233, 7137 |
| ApaLI | GTGCAC | 3 cut(s) | 2587, 4599, 6035 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 946, 978, 1463, 1495, 2791, 2823 |
| AseI | ATTAAT | 1 cut(s) | 3626 |
| AsiGI | ACCGGT | 1 cut(s) | 1656 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1857, 2433, 5199 |
| AspA2I | CCTAGG | 1 cut(s) | 2032 |
| AspLEI | GCGC | 6 cut(s) | 228, 2567, 3496, 6569, 6765, 7042 |
| AsuC2I | CCSGG | 2 cut(s) | 5919, 6754 |
| AsuII | TTCGAA | 2 cut(s) | 788, 1491 |
| AsuNHI | GCTAGC | 1 cut(s) | 6268 |
| AvaI | CYCGRG | 1 cut(s) | 4482 |
| AvaII | GGWCC | 9 cut(s) | 1433, 1511, 1981, 3418, 3488, 3595, 3689, 4650, 5681 |
| AvrII | CCTAGG | 1 cut(s) | 2032 |
| AxyI | CCTNAGG | 1 cut(s) | 6339 |
| BaeGI | GKGCMC | 3 cut(s) | 2591, 4603, 6039 |
| BalI | TGGCCA | 2 cut(s) | 2047, 5891 |
| BamHI | GGATCC | 2 cut(s) | 568, 5783 |
| BanI | GGYRCC | 1 cut(s) | 2740 |
| BanII | GRGCYC | 1 cut(s) | 3341 |
| BbrPI | CACGTG | 1 cut(s) | 2265 |
| BbsI | GAAGAC | 3 cut(s) | 4113, 4410, 5520 |
| Bbv12I | GWGCWC | 4 cut(s) | 2591, 3341, 4603, 6039 |
| BceAI | ACGGC | 3 cut(s) | 53, 5600, 6859 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2786, 2820, 6952, 6986 |
| BciVI | GTATCC | 2 cut(s) | 2006, 6841 |
| BclI | TGATCA | 3 cut(s) | 3763, 4858, 6520 |
| BcnI | CCSGG | 2 cut(s) | 5919, 6754 |
| BfmI | CTRYAG | 5 cut(s) | 1515, 2570, 4044, 5608, 6650 |
| BfoI | RGCGCY | 1 cut(s) | 7043 |
| BfrI | CTTAAG | 1 cut(s) | 4993 |
| BfuAI | ACCTGC | 2 cut(s) | 1680, 2482 |
| BfuI | GTATCC | 2 cut(s) | 2006, 6841 |
| BglII | AGATCT | 2 cut(s) | 1190, 1304 |
| BlnI | CCTAGG | 1 cut(s) | 2032 |
| BlpI | GCTNAGC | 1 cut(s) | 5473 |
| Bme18I | GGWCC | 9 cut(s) | 1433, 1511, 1981, 3418, 3488, 3595, 3689, 4650, 5681 |
| BmeRI | GACNNNNNGTC | 4 cut(s) | 39, 3648, 5086, 6956 |
| BmeT110I | CYCGRG | 1 cut(s) | 4482 |
| BmgBI | CACGTC | 1 cut(s) | 5270 |
| BmrI | ACTGGG | 4 cut(s) | 3189, 3542, 6364, 6376 |
| BmtI | GCTAGC | 1 cut(s) | 6272 |
| BmuI | ACTGGG | 4 cut(s) | 3189, 3542, 6364, 6376 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2229, 3423 |
| BpiI | GAAGAC | 3 cut(s) | 4113, 4410, 5520 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 1885, 1917, 2177, 2209, 3195, 3227, 5436, 5468 |
| BpmI | CTGGAG | 3 cut(s) | 770, 1300, 2942 |
| Bpu10I | CCTNAGC | 2 cut(s) | 666, 3111 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 5473 |
| Bpu14I | TTCGAA | 2 cut(s) | 788, 1491 |
| BpuEI | CTTGAG | 5 cut(s) | 2272, 4283, 5243, 5845, 6598 |
| BpuMI | CCSGG | 2 cut(s) | 5919, 6754 |
| Bsa29I | ATCGAT | 3 cut(s) | 3171, 4426, 6710 |
| BsaAI | YACGTR | 2 cut(s) | 2265, 5017 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1994, 2400 |
| BsaHI | GRCGYC | 1 cut(s) | 40 |
| BsaI | GGTCTC | 4 cut(s) | 1647, 1658, 1902, 6053 |
| BsaWI | WCCGGW | 4 cut(s) | 1656, 2233, 7081, 7137 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1160, 1190, 2915, 2945, 5507, 5537 |
| Bse118I | RCCGGY | 2 cut(s) | 1120, 1656 |
| Bse21I | CCTNAGG | 1 cut(s) | 6339 |
| Bse3DI | GCAATG | 4 cut(s) | 116, 646, 2891, 7151 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1994, 2400 |
| BseAI | TCCGGA | 2 cut(s) | 2233, 7137 |
| BseCI | ATCGAT | 3 cut(s) | 3171, 4426, 6710 |
| BseJI | GATNNNNATC | 2 cut(s) | 1994, 2400 |
| BseMI | GCAATG | 4 cut(s) | 116, 646, 2891, 7151 |
| BseRI | GAGGAG | 4 cut(s) | 66, 1890, 5423, 6586 |
| BseSI | GKGCMC | 3 cut(s) | 2591, 4603, 6039 |
| BseYI | CCCAGC | 2 cut(s) | 5538, 6378 |
| BsgI | GTGCAG | 3 cut(s) | 1721, 2530, 4939 |
| Bsh1236I | CGCG | 2 cut(s) | 228, 6569 |
| BshNI | GGYRCC | 1 cut(s) | 2740 |
| BshTI | ACCGGT | 1 cut(s) | 1656 |
| BshVI | ATCGAT | 3 cut(s) | 3171, 4426, 6710 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2591, 3341, 4603, 6039 |
| BsiHKCI | CYCGRG | 1 cut(s) | 4482 |
| BsiSI | CCGG | 9 cut(s) | 1121, 1657, 2234, 5703, 5918, 6753, 6948, 7082, 7138 |
| BsiWI | CGTACG | 1 cut(s) | 6786 |
| BslFI | GGGAC | 6 cut(s) | 3476, 3655, 4499, 5350, 6041, 6383 |
| BsmBI | CGTCTC | 2 cut(s) | 1163, 4068 |
| BsmFI | GGGAC | 6 cut(s) | 3476, 3655, 4499, 5350, 6041, 6383 |
| BsmI | GAATGC | 1 cut(s) | 3122 |
| Bso31I | GGTCTC | 4 cut(s) | 1647, 1658, 1902, 6053 |
| BsoBI | CYCGRG | 1 cut(s) | 4482 |
| Bsp119I | TTCGAA | 2 cut(s) | 788, 1491 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2591, 3341, 4603, 6039 |
| Bsp13I | TCCGGA | 2 cut(s) | 2233, 7137 |
| Bsp1407I | TGTACA | 4 cut(s) | 475, 493, 1864, 5007 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 5473 |
| Bsp19I | CCATGG | 4 cut(s) | 3697, 3902, 5779, 6165 |
| BspDI | ATCGAT | 3 cut(s) | 3171, 4426, 6710 |
| BspEI | TCCGGA | 2 cut(s) | 2233, 7137 |
| BspFNI | CGCG | 2 cut(s) | 228, 6569 |
| BspHI | TCATGA | 4 cut(s) | 352, 2773, 4218, 5496 |
| BspMAI | CTGCAG | 1 cut(s) | 2574 |
| BspMI | ACCTGC | 2 cut(s) | 1680, 2482 |
| BspOI | GCTAGC | 1 cut(s) | 6272 |
| BspQI | GCTCTTC | 2 cut(s) | 3346, 4167 |
| BspT104I | TTCGAA | 2 cut(s) | 788, 1491 |
| BspT107I | GGYRCC | 1 cut(s) | 2740 |
| BspTI | CTTAAG | 1 cut(s) | 4993 |
| BspTNI | GGTCTC | 4 cut(s) | 1647, 1658, 1902, 6053 |
| BsrDI | GCAATG | 4 cut(s) | 116, 646, 2891, 7151 |
| BsrFI | RCCGGY | 2 cut(s) | 1120, 1656 |
| BsrGI | TGTACA | 4 cut(s) | 475, 493, 1864, 5007 |
| BssAI | RCCGGY | 2 cut(s) | 1120, 1656 |
| BssNAI | GTATAC | 2 cut(s) | 4744, 5996 |
| BssNI | GRCGYC | 1 cut(s) | 40 |
| BssT1I | CCWWGG | 9 cut(s) | 1359, 1429, 1977, 2032, 3697, 3902, 5040, 5779, 6165 |
| Bst1107I | GTATAC | 2 cut(s) | 4744, 5996 |
| Bst6I | CTCTTC | 8 cut(s) | 1179, 1493, 2075, 3346, 4095, 4167, 6787, 6902 |
| BstACI | GRCGYC | 1 cut(s) | 40 |
| BstAFI | CTTAAG | 1 cut(s) | 4993 |
| BstAUI | TGTACA | 4 cut(s) | 475, 493, 1864, 5007 |
| BstBAI | YACGTR | 2 cut(s) | 2265, 5017 |
| BstBI | TTCGAA | 2 cut(s) | 788, 1491 |
| BstDSI | CCRYGG | 5 cut(s) | 18, 3697, 3902, 5779, 6165 |
| BstEII | GGTNACC | 3 cut(s) | 526, 5179, 6719 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2537 |
| BstFNI | CGCG | 2 cut(s) | 228, 6569 |
| BstH2I | RGCGCY | 1 cut(s) | 7043 |
| BstHHI | GCGC | 6 cut(s) | 228, 2567, 3496, 6569, 6765, 7042 |
| BstNSI | RCATGY | 8 cut(s) | 309, 930, 2872, 3276, 3299, 5014, 5481, 6452 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2229, 3423 |
| BstPI | GGTNACC | 3 cut(s) | 526, 5179, 6719 |
| BstSFI | CTRYAG | 5 cut(s) | 1515, 2570, 4044, 5608, 6650 |
| BstSLI | GKGCMC | 3 cut(s) | 2591, 4603, 6039 |
| BstUI | CGCG | 2 cut(s) | 228, 6569 |
| BstV2I | GAAGAC | 3 cut(s) | 4113, 4410, 5520 |
| BstX2I | RGATCY | 8 cut(s) | 568, 704, 1190, 1304, 2917, 3241, 4273, 5783 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1991 |
| BstYI | RGATCY | 8 cut(s) | 568, 704, 1190, 1304, 2917, 3241, 4273, 5783 |
| BstZ17I | GTATAC | 2 cut(s) | 4744, 5996 |
| Bsu15I | ATCGAT | 3 cut(s) | 3171, 4426, 6710 |
| Bsu36I | CCTNAGG | 1 cut(s) | 6339 |
| BsuI | GTATCC | 2 cut(s) | 2006, 6841 |
| BsuTUI | ATCGAT | 3 cut(s) | 3171, 4426, 6710 |
| BtgI | CCRYGG | 5 cut(s) | 18, 3697, 3902, 5779, 6165 |
| BtgZI | GCGATG | 1 cut(s) | 6969 |
| BtrI | CACGTC | 1 cut(s) | 5270 |
| BtsI | GCAGTG | 3 cut(s) | 2033, 2518, 2579 |
| BveI | ACCTGC | 2 cut(s) | 1680, 2482 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1862, 2855 |
| CciI | TCATGA | 4 cut(s) | 352, 2773, 4218, 5496 |
| CfoI | GCGC | 6 cut(s) | 228, 2567, 3496, 6569, 6765, 7042 |
| Cfr10I | RCCGGY | 2 cut(s) | 1120, 1656 |
| ClaI | ATCGAT | 3 cut(s) | 3171, 4426, 6710 |
| CseI | GACGC | 2 cut(s) | 29, 4050 |
| CspAI | ACCGGT | 1 cut(s) | 1656 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 7149 |
| DraI | TTTAAA | 4 cut(s) | 4312, 4687, 4980, 6618 |
| DraIII | CACNNNGTG | 1 cut(s) | 4771 |
| DrdI | GACNNNNNNGTC | 4 cut(s) | 2841, 3195, 4012, 6430 |
| DriI | GACNNNNNGTC | 4 cut(s) | 39, 3648, 5086, 6956 |
| DseDI | GACNNNNNNGTC | 4 cut(s) | 2841, 3195, 4012, 6430 |
| EaeI | YGGCCR | 5 cut(s) | 2045, 5649, 5700, 5889, 6872 |
| Eam1104I | CTCTTC | 8 cut(s) | 1179, 1493, 2075, 3346, 4095, 4167, 6787, 6902 |
| Eam1105I | GACNNNNNGTC | 4 cut(s) | 39, 3648, 5086, 6956 |
| EarI | CTCTTC | 8 cut(s) | 1179, 1493, 2075, 3346, 4095, 4167, 6787, 6902 |
| EciI | GGCGGA | 1 cut(s) | 6944 |
| Ecl136II | GAGCTC | 1 cut(s) | 3339 |
| Eco130I | CCWWGG | 9 cut(s) | 1359, 1429, 1977, 2032, 3697, 3902, 5040, 5779, 6165 |
| Eco24I | GRGCYC | 1 cut(s) | 3341 |
| Eco31I | GGTCTC | 4 cut(s) | 1647, 1658, 1902, 6053 |
| Eco32I | GATATC | 1 cut(s) | 2482 |
| Eco47I | GGWCC | 9 cut(s) | 1433, 1511, 1981, 3418, 3488, 3595, 3689, 4650, 5681 |
| Eco53kI | GAGCTC | 1 cut(s) | 3339 |
| Eco57I | CTGAAG | 7 cut(s) | 530, 1619, 2042, 2471, 3327, 4119, 6242 |
| Eco72I | CACGTG | 1 cut(s) | 2265 |
| Eco81I | CCTNAGG | 1 cut(s) | 6339 |
| Eco88I | CYCGRG | 1 cut(s) | 4482 |
| Eco91I | GGTNACC | 3 cut(s) | 526, 5179, 6719 |
| EcoICRI | GAGCTC | 1 cut(s) | 3339 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2537 |
| EcoO109I | RGGNCCY | 5 cut(s) | 54, 1533, 1776, 3488, 3595 |
| EcoO65I | GGTNACC | 3 cut(s) | 526, 5179, 6719 |
| EcoRI | GAATTC | 1 cut(s) | 3514 |
| EcoRV | GATATC | 1 cut(s) | 2482 |
| EcoT14I | CCWWGG | 9 cut(s) | 1359, 1429, 1977, 2032, 3697, 3902, 5040, 5779, 6165 |
| EcoT22I | ATGCAT | 3 cut(s) | 2891, 3589, 6985 |
| EcoT38I | GRGCYC | 1 cut(s) | 3341 |
| ErhI | CCWWGG | 9 cut(s) | 1359, 1429, 1977, 2032, 3697, 3902, 5040, 5779, 6165 |
| Esp3I | CGTCTC | 2 cut(s) | 1163, 4068 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 304, 336, 3073, 3105, 3762, 3794, 4164, 4196 |
| FaqI | GGGAC | 6 cut(s) | 3476, 3655, 4499, 5350, 6041, 6383 |
| FauI | CCCGC | 4 cut(s) | 602, 5916, 6842, 7068 |
| FauNDI | CATATG | 2 cut(s) | 1546, 1873 |
| FbaI | TGATCA | 3 cut(s) | 3763, 4858, 6520 |
| FblI | GTMKAC | 4 cut(s) | 2833, 4743, 5118, 5995 |
| FriOI | GRGCYC | 1 cut(s) | 3341 |
| FspI | TGCGCA | 1 cut(s) | 6764 |
| GlaI | GCGC | 6 cut(s) | 227, 2566, 3495, 6568, 6764, 7041 |
| GsaI | CCCAGC | 2 cut(s) | 5542, 6382 |
| GsuI | CTGGAG | 3 cut(s) | 770, 1300, 2942 |
| HaeII | RGCGCY | 1 cut(s) | 7043 |
| HapII | CCGG | 9 cut(s) | 1121, 1657, 2234, 5703, 5918, 6753, 6948, 7082, 7138 |
| HgaI | GACGC | 2 cut(s) | 29, 4050 |
| HhaI | GCGC | 6 cut(s) | 228, 2567, 3496, 6569, 6765, 7042 |
| Hin1I | GRCGYC | 1 cut(s) | 40 |
| Hin6I | GCGC | 6 cut(s) | 226, 2565, 3494, 6567, 6763, 7040 |
| HinP1I | GCGC | 6 cut(s) | 226, 2565, 3494, 6567, 6763, 7040 |
| HincII | GTYRAC | 9 cut(s) | 373, 615, 655, 2834, 3982, 4371, 4462, 5219, 6676 |
| HindII | GTYRAC | 9 cut(s) | 373, 615, 655, 2834, 3982, 4371, 4462, 5219, 6676 |
| HindIII | AAGCTT | 3 cut(s) | 1796, 2633, 6476 |
| HpaI | GTTAAC | 1 cut(s) | 615 |
| HpaII | CCGG | 9 cut(s) | 1121, 1657, 2234, 5703, 5918, 6753, 6948, 7082, 7138 |
| Hpy99I | CGWCG | 2 cut(s) | 2835, 6016 |
| Hsp92I | GRCGYC | 1 cut(s) | 40 |
| HspAI | GCGC | 6 cut(s) | 226, 2565, 3494, 6567, 6763, 7040 |
| Kpn2I | TCCGGA | 2 cut(s) | 2233, 7137 |
| Ksp22I | TGATCA | 3 cut(s) | 3763, 4858, 6520 |
| KspAI | GTTAAC | 1 cut(s) | 615 |
| LguI | GCTCTTC | 2 cut(s) | 3346, 4167 |
| MfeI | CAATTG | 6 cut(s) | 3407, 3550, 3841, 3948, 4752, 5547 |
| MflI | RGATCY | 8 cut(s) | 568, 704, 1190, 1304, 2917, 3241, 4273, 5783 |
| MhlI | GDGCHC | 4 cut(s) | 2591, 3341, 4603, 6039 |
| MlsI | TGGCCA | 2 cut(s) | 2047, 5891 |
| MluNI | TGGCCA | 2 cut(s) | 2047, 5891 |
| MlyI | GAGTC | 8 cut(s) | 1190, 2263, 2777, 3202, 5253, 5332, 5576, 6945 |
| MmeI | TCCRAC | 8 cut(s) | 1365, 1489, 1641, 5070, 5103, 6441, 6801, 7104 |
| Mox20I | TGGCCA | 2 cut(s) | 2047, 5891 |
| Mph1103I | ATGCAT | 3 cut(s) | 2891, 3589, 6985 |
| MroI | TCCGGA | 2 cut(s) | 2233, 7137 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1857, 2433, 5199 |
| MscI | TGGCCA | 2 cut(s) | 2047, 5891 |
| MslI | CAYNNNNRTG | 9 cut(s) | 1316, 2187, 2778, 3300, 3509, 4223, 4264, 5019, 6978 |
| Msp20I | TGGCCA | 2 cut(s) | 2047, 5891 |
| MspA1I | CMGCKG | 2 cut(s) | 5812, 6206 |
| MspCI | CTTAAG | 1 cut(s) | 4993 |
| MspI | CCGG | 9 cut(s) | 1121, 1657, 2234, 5703, 5918, 6753, 6948, 7082, 7138 |
| MssI | GTTTAAAC | 1 cut(s) | 4980 |
| MunI | CAATTG | 6 cut(s) | 3407, 3550, 3841, 3948, 4752, 5547 |
| Mva1269I | GAATGC | 1 cut(s) | 3122 |
| MvnI | CGCG | 2 cut(s) | 228, 6569 |
| NciI | CCSGG | 2 cut(s) | 5919, 6754 |
| NcoI | CCATGG | 4 cut(s) | 3697, 3902, 5779, 6165 |
| NdeI | CATATG | 2 cut(s) | 1546, 1873 |
| NheI | GCTAGC | 1 cut(s) | 6268 |
| NmeAIII | GCCGAG | 1 cut(s) | 2972 |
| NsbI | TGCGCA | 1 cut(s) | 6764 |
| NsiI | ATGCAT | 3 cut(s) | 2891, 3589, 6985 |
| NspI | RCATGY | 8 cut(s) | 309, 930, 2872, 3276, 3299, 5014, 5481, 6452 |
| NspV | TTCGAA | 2 cut(s) | 788, 1491 |
| OliI | CACNNNNGTG | 1 cut(s) | 4264 |
| PagI | TCATGA | 4 cut(s) | 352, 2773, 4218, 5496 |
| PciI | ACATGT | 2 cut(s) | 305, 3295 |
| PciSI | GCTCTTC | 2 cut(s) | 3346, 4167 |
| PctI | GAATGC | 1 cut(s) | 3122 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1857, 2433, 5199 |
| Pfl23II | CGTACG | 1 cut(s) | 6786 |
| PflFI | GACNNNGTC | 2 cut(s) | 1174, 5519 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3698 |
| PfoI | TCCNGGA | 3 cut(s) | 3964, 5718, 6390 |
| PinAI | ACCGGT | 1 cut(s) | 1656 |
| PleI | GAGTC | 8 cut(s) | 1190, 2262, 2776, 3202, 5253, 5332, 5576, 6945 |
| PmaCI | CACGTG | 1 cut(s) | 2265 |
| PmeI | GTTTAAAC | 1 cut(s) | 4980 |
| PmlI | CACGTG | 1 cut(s) | 2265 |
| PpsI | GAGTC | 8 cut(s) | 1190, 2262, 2776, 3202, 5253, 5332, 5576, 6945 |
| Ppu21I | YACGTR | 2 cut(s) | 2265, 5017 |
| PpuMI | RGGWCCY | 2 cut(s) | 3488, 3595 |
| PscI | ACATGT | 2 cut(s) | 305, 3295 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2229, 3423 |
| PshBI | ATTAAT | 1 cut(s) | 3626 |
| Psp124BI | GAGCTC | 1 cut(s) | 3341 |
| Psp1406I | AACGTT | 1 cut(s) | 6737 |
| Psp5II | RGGWCCY | 2 cut(s) | 3488, 3595 |
| PspCI | CACGTG | 1 cut(s) | 2265 |
| PspEI | GGTNACC | 3 cut(s) | 526, 5179, 6719 |
| PspFI | CCCAGC | 2 cut(s) | 5538, 6378 |
| PspLI | CGTACG | 1 cut(s) | 6786 |
| PspPPI | RGGWCCY | 2 cut(s) | 3488, 3595 |
| PstI | CTGCAG | 1 cut(s) | 2574 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1862, 2855 |
| PsuI | RGATCY | 8 cut(s) | 568, 704, 1190, 1304, 2917, 3241, 4273, 5783 |
| PsyI | GACNNNGTC | 2 cut(s) | 1174, 5519 |
| PvuII | CAGCTG | 2 cut(s) | 5812, 6206 |
| RseI | CAYNNNNRTG | 9 cut(s) | 1316, 2187, 2778, 3300, 3509, 4223, 4264, 5019, 6978 |
| SacI | GAGCTC | 1 cut(s) | 3341 |
| SalI | GTCGAC | 1 cut(s) | 2832 |
| SapI | GCTCTTC | 2 cut(s) | 3346, 4167 |
| SchI | GAGTC | 8 cut(s) | 1190, 2263, 2777, 3202, 5253, 5332, 5576, 6945 |
| SduI | GDGCHC | 4 cut(s) | 2591, 3341, 4603, 6039 |
| SfcI | CTRYAG | 5 cut(s) | 1515, 2570, 4044, 5608, 6650 |
| SfuI | TTCGAA | 2 cut(s) | 788, 1491 |
| SinI | GGWCC | 9 cut(s) | 1433, 1511, 1981, 3418, 3488, 3595, 3689, 4650, 5681 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 1316, 2187, 2778, 3300, 3509, 4223, 4264, 5019, 6978 |
| SmlI | CTYRAG | 6 cut(s) | 2251, 4262, 4993, 5222, 5824, 6577 |
| SmoI | CTYRAG | 6 cut(s) | 2251, 4262, 4993, 5222, 5824, 6577 |
| SspI | AATATT | 5 cut(s) | 986, 1327, 4960, 5240, 5746 |
| SstI | GAGCTC | 1 cut(s) | 3341 |
| StyI | CCWWGG | 9 cut(s) | 1359, 1429, 1977, 2032, 3697, 3902, 5040, 5779, 6165 |
| TaqII | GACCGA | 2 cut(s) | 2024, 6980 |
| TatI | WGTACW | 8 cut(s) | 475, 493, 1483, 1864, 2609, 3796, 5007, 6113 |
| TauI | GCSGC | 3 cut(s) | 297, 4777, 6671 |
| TspGWI | ACGGA | 3 cut(s) | 6517, 6804, 7034 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1174, 5519 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3698 |
| Vha464I | CTTAAG | 1 cut(s) | 4993 |
| VneI | GTGCAC | 3 cut(s) | 2587, 4599, 6035 |
| VpaK11BI | GGWCC | 9 cut(s) | 1433, 1511, 1981, 3418, 3488, 3595, 3689, 4650, 5681 |
| VspI | ATTAAT | 1 cut(s) | 3626 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2537 |
| XbaI | TCTAGA | 3 cut(s) | 2764, 5272, 5464 |
| XceI | RCATGY | 8 cut(s) | 309, 930, 2872, 3276, 3299, 5014, 5481, 6452 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 5438, 5535 |
| XmaJI | CCTAGG | 1 cut(s) | 2032 |
| XmiI | GTMKAC | 4 cut(s) | 2833, 4743, 5118, 5995 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1857, 2433, 5199 |
| Zsp2I | ATGCAT | 3 cut(s) | 2891, 3589, 6985 |