Secretory pathway protein Sec39
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24350 AT5G24350 AT5G24350 |
| fragaria_vesca | FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 |
| malus_domestica | MD01G1225300.v1.1 MD07G1295800.v1.1 |
| prunus_persica | Prupe.2G315300_v2.0.a1 Prupe.2G315300_v2.0.a1 |
| pyrus_communis | pycom01g23370 pycom07g26850 pycom07g26860 |
| rosa_chinensis | RchiOBHm_Chr1g0381961 |
| rosa_laevigata | RLG00000026198 |
| rosa_multiflora | Rmu_sc0010238.1_g000002 Rmu_sc0017430.1_g000002 Rmu_sc0017430.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00278310 |
| rosa_rugosa | Rorug01G0432500 |
| rosa_samantha | Rh1AG455700 Rh1BG412800 Rh1CG427700 Rh1DG445100 |
| rosa_wichuraiana | Rw1G041350 Rw1G041500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 533, 3095 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 915 |
| Acc65I | GGTACC | 2 cut(s) | 460, 1556 |
| AccB1I | GGYRCC | 2 cut(s) | 460, 1556 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 860, 1874 |
| AccI | GTMKAC | 5 cut(s) | 1423, 2090, 2727, 2838, 3061 |
| AccIII | TCCGGA | 1 cut(s) | 4831 |
| AciI | CCGC | 4 cut(s) | 416, 595, 3016, 3629 |
| AclI | AACGTT | 2 cut(s) | 867, 4935 |
| AclWI | GGATC | 6 cut(s) | 956, 1859, 1872, 2795, 4626, 4897 |
| AcuI | CTGAAG | 6 cut(s) | 191, 1839, 2742, 3393, 3405, 4104 |
| AfaI | GTAC | 8 cut(s) | 331, 462, 721, 1558, 2056, 2465, 3838, 4656 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 594, 822, 860, 920, 1874, 3044, 3253, 3254, 3740 |
| AflII | CTTAAG | 1 cut(s) | 2713 |
| AflIII | ACRYGT | 3 cut(s) | 1015, 2587, 2989 |
| AgeI | ACCGGT | 1 cut(s) | 2549 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1368 |
| AjnI | CCWGG | 7 cut(s) | 701, 1684, 1736, 2173, 3438, 3507, 4116 |
| AleI | CACNNNNGTG | 2 cut(s) | 292, 3419 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4856, 4888 |
| Alw21I | GWGCWC | 4 cut(s) | 289, 311, 1061, 3759 |
| Alw44I | GTGCAC | 3 cut(s) | 285, 307, 3755 |
| AlwI | GGATC | 6 cut(s) | 956, 1859, 1872, 2795, 4626, 4897 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 575, 1115, 1252 |
| Ama87I | CYCGRG | 1 cut(s) | 2202 |
| Aor13HI | TCCGGA | 1 cut(s) | 4831 |
| AoxI | GGCC | 2 cut(s) | 421, 4127 |
| ApaLI | GTGCAC | 3 cut(s) | 285, 307, 3755 |
| AseI | ATTAAT | 1 cut(s) | 1346 |
| AsiGI | ACCGGT | 1 cut(s) | 2549 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 479, 2893, 2919 |
| Asp718I | GGTACC | 2 cut(s) | 460, 1556 |
| AspLEI | GCGC | 2 cut(s) | 1216, 2496 |
| AspS9I | GGNCC | 5 cut(s) | 1208, 3164, 3362, 3401, 4127 |
| AsuC2I | CCSGG | 1 cut(s) | 3639 |
| AsuHPI | GGTGA | 6 cut(s) | 484, 1130, 3311, 3873, 4039, 4201 |
| AvaI | CYCGRG | 1 cut(s) | 2202 |
| AvaII | GGWCC | 4 cut(s) | 1208, 3164, 3362, 3401 |
| BaeGI | GKGCMC | 4 cut(s) | 289, 311, 3266, 3759 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 452, 485 |
| BamHI | GGATCC | 1 cut(s) | 1864 |
| BanI | GGYRCC | 2 cut(s) | 460, 1556 |
| BanII | GRGCYC | 1 cut(s) | 1061 |
| BbsI | GAAGAC | 1 cut(s) | 2130 |
| Bbv12I | GWGCWC | 4 cut(s) | 289, 311, 1061, 3759 |
| BbvCI | CCTCAGC | 1 cut(s) | 4770 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 506, 540, 545, 579, 4714, 4748 |
| BciT130I | CCWGG | 7 cut(s) | 703, 1686, 1738, 2175, 3440, 3509, 4118 |
| BciVI | GTATCC | 1 cut(s) | 3708 |
| BclI | TGATCA | 1 cut(s) | 2578 |
| BcnI | CCSGG | 1 cut(s) | 3639 |
| BfrI | CTTAAG | 1 cut(s) | 2713 |
| BfuI | GTATCC | 1 cut(s) | 3708 |
| BglII | AGATCT | 1 cut(s) | 1315 |
| BlpI | GCTNAGC | 1 cut(s) | 4751 |
| BmcAI | AGTACT | 2 cut(s) | 2056, 4656 |
| Bme1390I | CCNGG | 8 cut(s) | 703, 1686, 1738, 2175, 3440, 3509, 3639, 4118 |
| Bme18I | GGWCC | 4 cut(s) | 1208, 3164, 3362, 3401 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1368 |
| BmeT110I | CYCGRG | 1 cut(s) | 2202 |
| BmgT120I | GGNCC | 5 cut(s) | 1208, 3164, 3362, 3401, 4127 |
| BmiI | GGNNCC | 7 cut(s) | 462, 1209, 1393, 1558, 1866, 3402, 3643 |
| BmrFI | CCNGG | 8 cut(s) | 703, 1686, 1738, 2175, 3440, 3509, 3639, 4118 |
| BmrI | ACTGGG | 2 cut(s) | 909, 4102 |
| BmuI | ACTGGG | 2 cut(s) | 909, 4102 |
| BpiI | GAAGAC | 1 cut(s) | 2130 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 915, 947 |
| BpmI | CTGGAG | 4 cut(s) | 416, 1047, 3941, 4814 |
| Bpu10I | CCTNAGC | 2 cut(s) | 831, 4770 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4751 |
| BpuEI | CTTGAG | 4 cut(s) | 84, 2963, 3158, 4324 |
| BpuMI | CCSGG | 1 cut(s) | 3639 |
| Bsa29I | ATCGAT | 1 cut(s) | 2244 |
| BsaBI | GATNNNNATC | 1 cut(s) | 120 |
| BsaI | GGTCTC | 2 cut(s) | 2519, 2822 |
| BsaJI | CCNNGG | 4 cut(s) | 1622, 3507, 3734, 3888 |
| BsaWI | WCCGGW | 2 cut(s) | 2549, 4831 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 635, 665, 2621, 2651, 3227, 3257 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 594, 822, 860, 920, 1874, 3044, 3253, 3254, 3740 |
| Bse118I | RCCGGY | 1 cut(s) | 2549 |
| Bse1I | ACTGG | 9 cut(s) | 417, 915, 1006, 2544, 3412, 4082, 4097, 4249, 4875 |
| Bse3DI | GCAATG | 4 cut(s) | 611, 3077, 4856, 4919 |
| Bse8I | GATNNNNATC | 1 cut(s) | 120 |
| BseAI | TCCGGA | 1 cut(s) | 4831 |
| BseBI | CCWGG | 7 cut(s) | 703, 1686, 1738, 2175, 3440, 3509, 4118 |
| BseCI | ATCGAT | 1 cut(s) | 2244 |
| BseDI | CCNNGG | 4 cut(s) | 1622, 3507, 3734, 3888 |
| BseJI | GATNNNNATC | 1 cut(s) | 120 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 594, 822, 860, 920, 1874, 3044, 3253, 3254, 3740 |
| BseMI | GCAATG | 4 cut(s) | 611, 3077, 4856, 4919 |
| BseMII | CTCAG | 8 cut(s) | 744, 807, 2352, 3603, 3875, 4125, 4592, 4761 |
| BseNI | ACTGG | 9 cut(s) | 417, 915, 1006, 2544, 3412, 4082, 4097, 4249, 4875 |
| BseRI | GAGGAG | 3 cut(s) | 1384, 2424, 2443 |
| BseSI | GKGCMC | 4 cut(s) | 289, 311, 3266, 3759 |
| BseYI | CCCAGC | 2 cut(s) | 683, 3710 |
| BsgI | GTGCAG | 2 cut(s) | 2340, 4820 |
| BshFI | GGCC | 2 cut(s) | 423, 4129 |
| BshNI | GGYRCC | 2 cut(s) | 460, 1556 |
| BshTI | ACCGGT | 1 cut(s) | 2549 |
| BshVI | ATCGAT | 1 cut(s) | 2244 |
| BsiHKAI | GWGCWC | 4 cut(s) | 289, 311, 1061, 3759 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2202 |
| BsiSI | CCGG | 3 cut(s) | 2550, 3639, 4832 |
| BslFI | GGGAC | 4 cut(s) | 798, 4046, 4109, 4646 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 594, 822, 860, 920, 1874, 3044, 3253, 3254, 3740 |
| BsmFI | GGGAC | 4 cut(s) | 798, 4046, 4109, 4646 |
| BsmI | GAATGC | 1 cut(s) | 842 |
| BsnI | GGCC | 2 cut(s) | 423, 4129 |
| Bso31I | GGTCTC | 2 cut(s) | 2519, 2822 |
| BsoBI | CYCGRG | 1 cut(s) | 2202 |
| Bsp1286I | GDGCHC | 5 cut(s) | 289, 311, 1061, 3266, 3759 |
| Bsp13I | TCCGGA | 1 cut(s) | 4831 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4751 |
| Bsp19I | CCATGG | 1 cut(s) | 3888 |
| BspACI | CCGC | 4 cut(s) | 416, 595, 3016, 3629 |
| BspANI | GGCC | 2 cut(s) | 423, 4129 |
| BspCNI | CTCAG | 8 cut(s) | 745, 806, 2353, 3604, 3874, 4126, 4591, 4762 |
| BspDI | ATCGAT | 1 cut(s) | 2244 |
| BspEI | TCCGGA | 1 cut(s) | 4831 |
| BspHI | TCATGA | 1 cut(s) | 1938 |
| BspLI | GGNNCC | 7 cut(s) | 462, 1209, 1393, 1558, 1866, 3402, 3643 |
| BspMAI | CTGCAG | 3 cut(s) | 133, 1111, 2473 |
| BspPI | GGATC | 6 cut(s) | 956, 1859, 1872, 2795, 4626, 4897 |
| BspQI | GCTCTTC | 1 cut(s) | 1887 |
| BspT107I | GGYRCC | 2 cut(s) | 460, 1556 |
| BspTI | CTTAAG | 1 cut(s) | 2713 |
| BspTNI | GGTCTC | 2 cut(s) | 2519, 2822 |
| BsrDI | GCAATG | 4 cut(s) | 611, 3077, 4856, 4919 |
| BsrFI | RCCGGY | 1 cut(s) | 2549 |
| BsrI | ACTGG | 9 cut(s) | 417, 915, 1006, 2544, 3412, 4082, 4097, 4249, 4875 |
| BssAI | RCCGGY | 1 cut(s) | 2549 |
| BssECI | CCNNGG | 4 cut(s) | 1622, 3507, 3734, 3888 |
| BssNAI | GTATAC | 1 cut(s) | 1424 |
| BssT1I | CCWWGG | 2 cut(s) | 1622, 3888 |
| Bst1107I | GTATAC | 1 cut(s) | 1424 |
| Bst2UI | CCWGG | 7 cut(s) | 703, 1686, 1738, 2175, 3440, 3509, 4118 |
| Bst4CI | ACNGT | 8 cut(s) | 294, 1421, 1658, 2150, 3239, 3735, 4380, 4610 |
| Bst6I | CTCTTC | 2 cut(s) | 15, 1887 |
| BstAFI | CTTAAG | 1 cut(s) | 2713 |
| BstC8I | GCNNGC | 3 cut(s) | 209, 1837, 3993 |
| BstDSI | CCRYGG | 2 cut(s) | 3734, 3888 |
| BstEII | GGTNACC | 1 cut(s) | 1723 |
| BstHHI | GCGC | 2 cut(s) | 1216, 2496 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 601, 949, 1103, 1112, 1199, 1787, 2891, 4360 |
| BstNI | CCWGG | 7 cut(s) | 703, 1686, 1738, 2175, 3440, 3509, 4118 |
| BstNSI | RCATGY | 7 cut(s) | 1019, 2591, 2734, 2738, 2993, 4178, 4913 |
| BstPI | GGTNACC | 1 cut(s) | 1723 |
| BstSCI | CCNGG | 8 cut(s) | 701, 1684, 1736, 2173, 3438, 3507, 3637, 4116 |
| BstSLI | GKGCMC | 4 cut(s) | 289, 311, 3266, 3759 |
| BstV2I | GAAGAC | 1 cut(s) | 2130 |
| BstX2I | RGATCY | 4 cut(s) | 961, 1315, 1864, 4631 |
| BstYI | RGATCY | 4 cut(s) | 961, 1315, 1864, 4631 |
| BstZ17I | GTATAC | 1 cut(s) | 1424 |
| Bsu15I | ATCGAT | 1 cut(s) | 2244 |
| BsuI | GTATCC | 1 cut(s) | 3708 |
| BsuRI | GGCC | 2 cut(s) | 423, 4129 |
| BsuTUI | ATCGAT | 1 cut(s) | 2244 |
| BtgI | CCRYGG | 2 cut(s) | 3734, 3888 |
| BtgZI | GCGATG | 2 cut(s) | 3350, 4731 |
| BtsI | GCAGTG | 3 cut(s) | 865, 4169, 4391 |
| Cac8I | GCNNGC | 3 cut(s) | 209, 1837, 3993 |
| CaiI | CAGNNNCTG | 3 cut(s) | 575, 1115, 1252 |
| CciI | TCATGA | 1 cut(s) | 1938 |
| CfoI | GCGC | 2 cut(s) | 1216, 2496 |
| Cfr10I | RCCGGY | 1 cut(s) | 2549 |
| Cfr13I | GGNCC | 5 cut(s) | 1208, 3164, 3362, 3401, 4127 |
| ClaI | ATCGAT | 1 cut(s) | 2244 |
| Csp6I | GTAC | 8 cut(s) | 330, 461, 720, 1557, 2055, 2464, 3837, 4655 |
| CspAI | ACCGGT | 1 cut(s) | 2549 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4362, 4397 |
| CviQI | GTAC | 8 cut(s) | 330, 461, 720, 1557, 2055, 2464, 3837, 4655 |
| DraI | TTTAAA | 5 cut(s) | 714, 2032, 2277, 2674, 4225 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 915 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1368 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 915 |
| Eam1104I | CTCTTC | 2 cut(s) | 15, 1887 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1368 |
| EarI | CTCTTC | 2 cut(s) | 15, 1887 |
| EciI | GGCGGA | 1 cut(s) | 431 |
| Ecl136II | GAGCTC | 1 cut(s) | 1059 |
| Eco130I | CCWWGG | 2 cut(s) | 1622, 3888 |
| Eco24I | GRGCYC | 1 cut(s) | 1061 |
| Eco31I | GGTCTC | 2 cut(s) | 2519, 2822 |
| Eco32I | GATATC | 2 cut(s) | 2339, 2383 |
| Eco47I | GGWCC | 4 cut(s) | 1208, 3164, 3362, 3401 |
| Eco53kI | GAGCTC | 1 cut(s) | 1059 |
| Eco57I | CTGAAG | 6 cut(s) | 191, 1839, 2742, 3393, 3405, 4104 |
| Eco88I | CYCGRG | 1 cut(s) | 2202 |
| Eco91I | GGTNACC | 1 cut(s) | 1723 |
| EcoICRI | GAGCTC | 1 cut(s) | 1059 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1208, 4127 |
| EcoO65I | GGTNACC | 1 cut(s) | 1723 |
| EcoRI | GAATTC | 1 cut(s) | 1513 |
| EcoRII | CCWGG | 7 cut(s) | 701, 1684, 1736, 2173, 3438, 3507, 4116 |
| EcoRV | GATATC | 2 cut(s) | 2339, 2383 |
| EcoT14I | CCWWGG | 2 cut(s) | 1622, 3888 |
| EcoT22I | ATGCAT | 6 cut(s) | 611, 1309, 2736, 4747, 4858, 4915 |
| EcoT38I | GRGCYC | 1 cut(s) | 1061 |
| ErhI | CCWWGG | 2 cut(s) | 1622, 3888 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 793, 825, 1884, 1916, 2078, 2110, 3075, 3107 |
| FaqI | GGGAC | 4 cut(s) | 798, 4046, 4109, 4646 |
| FauI | CCCGC | 2 cut(s) | 588, 3636 |
| FbaI | TGATCA | 1 cut(s) | 2578 |
| FblI | GTMKAC | 5 cut(s) | 1423, 2090, 2727, 2838, 3061 |
| FriOI | GRGCYC | 1 cut(s) | 1061 |
| GlaI | GCGC | 2 cut(s) | 1215, 2495 |
| GsaI | CCCAGC | 2 cut(s) | 687, 3714 |
| GsuI | CTGGAG | 4 cut(s) | 416, 1047, 3941, 4814 |
| HaeIII | GGCC | 2 cut(s) | 423, 4129 |
| HapII | CCGG | 3 cut(s) | 2550, 3639, 4832 |
| HhaI | GCGC | 2 cut(s) | 1216, 2496 |
| Hin6I | GCGC | 2 cut(s) | 1214, 2494 |
| HinP1I | GCGC | 2 cut(s) | 1214, 2494 |
| HincII | GTYRAC | 3 cut(s) | 111, 2182, 2939 |
| HindII | GTYRAC | 3 cut(s) | 111, 2182, 2939 |
| HindIII | AAGCTT | 1 cut(s) | 2757 |
| HpaII | CCGG | 3 cut(s) | 2550, 3639, 4832 |
| HphI | GGTGA | 6 cut(s) | 484, 1130, 3311, 3873, 4039, 4201 |
| Hpy99I | CGWCG | 2 cut(s) | 555, 4721 |
| HpyCH4III | ACNGT | 8 cut(s) | 294, 1421, 1658, 2150, 3239, 3735, 4380, 4610 |
| HpyCH4IV | ACGT | 5 cut(s) | 550, 867, 2136, 3416, 4935 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 601, 949, 1103, 1112, 1199, 1787, 2891, 4360 |
| HpySE526I | ACGT | 5 cut(s) | 550, 867, 2136, 3416, 4935 |
| HspAI | GCGC | 2 cut(s) | 1214, 2494 |
| Kpn2I | TCCGGA | 1 cut(s) | 4831 |
| KpnI | GGTACC | 2 cut(s) | 464, 1560 |
| Ksp22I | TGATCA | 1 cut(s) | 2578 |
| LguI | GCTCTTC | 1 cut(s) | 1887 |
| LmnI | GCTCC | 6 cut(s) | 1397, 1469, 1765, 1847, 2011, 2629 |
| MaeII | ACGT | 5 cut(s) | 550, 867, 2136, 3416, 4935 |
| MaeIII | GTNAC | 9 cut(s) | 245, 925, 1502, 1528, 1723, 1813, 4517, 4581, 4720 |
| MfeI | CAATTG | 2 cut(s) | 1127, 1980 |
| MflI | RGATCY | 4 cut(s) | 961, 1315, 1864, 4631 |
| MhlI | GDGCHC | 5 cut(s) | 289, 311, 1061, 3266, 3759 |
| MlyI | GAGTC | 8 cut(s) | 158, 400, 435, 497, 887, 922, 2973, 4707 |
| MmeI | TCCRAC | 2 cut(s) | 3428, 4930 |
| Mph1103I | ATGCAT | 6 cut(s) | 611, 1309, 2736, 4747, 4858, 4915 |
| MroI | TCCGGA | 1 cut(s) | 4831 |
| MroXI | GAANNNNTTC | 3 cut(s) | 479, 2893, 2919 |
| MspA1I | CMGCKG | 2 cut(s) | 1839, 3929 |
| MspCI | CTTAAG | 1 cut(s) | 2713 |
| MspI | CCGG | 3 cut(s) | 2550, 3639, 4832 |
| MspR9I | CCNGG | 8 cut(s) | 703, 1686, 1738, 2175, 3440, 3509, 3639, 4118 |
| MunI | CAATTG | 2 cut(s) | 1127, 1980 |
| Mva1269I | GAATGC | 1 cut(s) | 842 |
| MvaI | CCWGG | 7 cut(s) | 703, 1686, 1738, 2175, 3440, 3509, 4118 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 601, 949, 1103, 1112, 1199, 1787, 2891, 4360 |
| NciI | CCSGG | 1 cut(s) | 3639 |
| NcoI | CCATGG | 1 cut(s) | 3888 |
| NlaIV | GGNNCC | 7 cut(s) | 462, 1209, 1393, 1558, 1866, 3402, 3643 |
| NmeAIII | GCCGAG | 1 cut(s) | 3053 |
| NmuCI | GTSAC | 1 cut(s) | 925 |
| NsiI | ATGCAT | 6 cut(s) | 611, 1309, 2736, 4747, 4858, 4915 |
| NspI | RCATGY | 7 cut(s) | 1019, 2591, 2734, 2738, 2993, 4178, 4913 |
| OliI | CACNNNNGTG | 2 cut(s) | 292, 3419 |
| PacI | TTAATTAA | 1 cut(s) | 4260 |
| PaeR7I | CTCGAG | 1 cut(s) | 2202 |
| PagI | TCATGA | 1 cut(s) | 1938 |
| PciI | ACATGT | 3 cut(s) | 1015, 2587, 2989 |
| PciSI | GCTCTTC | 1 cut(s) | 1887 |
| PctI | GAATGC | 1 cut(s) | 842 |
| PdmI | GAANNNNTTC | 3 cut(s) | 479, 2893, 2919 |
| PflFI | GACNNNGTC | 2 cut(s) | 1170, 3239 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 860, 1874 |
| PfoI | TCCNGGA | 3 cut(s) | 1684, 3438, 4116 |
| PinAI | ACCGGT | 1 cut(s) | 2549 |
| PleI | GAGTC | 8 cut(s) | 157, 399, 435, 496, 886, 922, 2973, 4707 |
| PpsI | GAGTC | 8 cut(s) | 157, 399, 435, 496, 886, 922, 2973, 4707 |
| PpuMI | RGGWCCY | 1 cut(s) | 1208 |
| PscI | ACATGT | 3 cut(s) | 1015, 2587, 2989 |
| PshBI | ATTAAT | 1 cut(s) | 1346 |
| PsiI | TTATAA | 2 cut(s) | 533, 3095 |
| Psp124BI | GAGCTC | 1 cut(s) | 1061 |
| Psp1406I | AACGTT | 2 cut(s) | 867, 4935 |
| Psp5II | RGGWCCY | 1 cut(s) | 1208 |
| Psp6I | CCWGG | 7 cut(s) | 701, 1684, 1736, 2173, 3438, 3507, 4116 |
| PspEI | GGTNACC | 1 cut(s) | 1723 |
| PspFI | CCCAGC | 2 cut(s) | 683, 3710 |
| PspGI | CCWGG | 7 cut(s) | 701, 1684, 1736, 2173, 3438, 3507, 4116 |
| PspN4I | GGNNCC | 7 cut(s) | 462, 1209, 1393, 1558, 1866, 3402, 3643 |
| PspPI | GGNCC | 5 cut(s) | 1208, 3164, 3362, 3401, 4127 |
| PspPPI | RGGWCCY | 1 cut(s) | 1208 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3465, 3497 |
| PstI | CTGCAG | 3 cut(s) | 133, 1111, 2473 |
| PstNI | CAGNNNCTG | 3 cut(s) | 575, 1115, 1252 |
| PsuI | RGATCY | 4 cut(s) | 961, 1315, 1864, 4631 |
| PsyI | GACNNNGTC | 2 cut(s) | 1170, 3239 |
| PvuII | CAGCTG | 2 cut(s) | 1839, 3929 |
| RsaI | GTAC | 8 cut(s) | 331, 462, 721, 1558, 2056, 2465, 3838, 4656 |
| RsaNI | GTAC | 8 cut(s) | 330, 461, 720, 1557, 2055, 2464, 3837, 4655 |
| SacI | GAGCTC | 1 cut(s) | 1061 |
| SapI | GCTCTTC | 1 cut(s) | 1887 |
| Sau96I | GGNCC | 5 cut(s) | 1208, 3164, 3362, 3401, 4127 |
| ScaI | AGTACT | 2 cut(s) | 2056, 4656 |
| SchI | GAGTC | 8 cut(s) | 158, 400, 435, 497, 887, 922, 2973, 4707 |
| ScrFI | CCNGG | 8 cut(s) | 703, 1686, 1738, 2175, 3440, 3509, 3639, 4118 |
| SduI | GDGCHC | 5 cut(s) | 289, 311, 1061, 3266, 3759 |
| Sfr274I | CTCGAG | 1 cut(s) | 2202 |
| SinI | GGWCC | 4 cut(s) | 1208, 3164, 3362, 3401 |
| SlaI | CTCGAG | 1 cut(s) | 2202 |
| SmlI | CTYRAG | 6 cut(s) | 99, 2202, 2713, 2942, 3173, 4303 |
| SmoI | CTYRAG | 6 cut(s) | 99, 2202, 2713, 2942, 3173, 4303 |
| SsiI | CCGC | 4 cut(s) | 416, 595, 3016, 3629 |
| SspI | AATATT | 3 cut(s) | 2680, 2960, 4765 |
| SstI | GAGCTC | 1 cut(s) | 1061 |
| StyD4I | CCNGG | 8 cut(s) | 701, 1684, 1736, 2173, 3438, 3507, 3637, 4116 |
| StyI | CCWWGG | 2 cut(s) | 1622, 3888 |
| TaaI | ACNGT | 8 cut(s) | 294, 1421, 1658, 2150, 3239, 3735, 4380, 4610 |
| TaiI | ACGT | 5 cut(s) | 553, 870, 2139, 3419, 4938 |
| TaqI | TCGA | 9 cut(s) | 163, 1240, 1397, 1632, 2203, 2244, 2475, 3649, 4452 |
| TatI | WGTACW | 4 cut(s) | 329, 2054, 3836, 4654 |
| TseFI | GTSAC | 1 cut(s) | 925 |
| Tsp45I | GTSAC | 1 cut(s) | 925 |
| TspGWI | ACGGA | 1 cut(s) | 2793 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1170, 3239 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 860, 1874 |
| Vha464I | CTTAAG | 1 cut(s) | 2713 |
| VneI | GTGCAC | 3 cut(s) | 285, 307, 3755 |
| VpaK11BI | GGWCC | 4 cut(s) | 1208, 3164, 3362, 3401 |
| VspI | ATTAAT | 1 cut(s) | 1346 |
| XbaI | TCTAGA | 2 cut(s) | 1318, 3184 |
| XceI | RCATGY | 7 cut(s) | 1019, 2591, 2734, 2738, 2993, 4178, 4913 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 431, 3796 |
| XhoI | CTCGAG | 1 cut(s) | 2202 |
| XmiI | GTMKAC | 5 cut(s) | 1423, 2090, 2727, 2838, 3061 |
| XmnI | GAANNNNTTC | 3 cut(s) | 479, 2893, 2919 |
| ZrmI | AGTACT | 2 cut(s) | 2056, 4656 |
| Zsp2I | ATGCAT | 6 cut(s) | 611, 1309, 2736, 4747, 4858, 4915 |