Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004767

Physical Location & Seq

Genomic Coordinates Forward (+)

20715687 .. 20718146

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGACGAAGCAACTCGCACAGTGTTTTACGAGGCACGGCTTCACATTACGAGGCCCTACACTCCCAATTACCCTCCTCAACAGGCAAACAATGGCAGCAGAGGGAGCTTTCGATCACTGCTTTCCCTTCCAGGTGCGAGCCAGCTCAGGGATAAATGGAGCGAGTACAAACAGCCACGAAAATTGAGAAAGCTGGCATCTTTGTTTATCTCTCCGAGAGGCGAGCGTGTGGCTGTTGCTTCCGGAAATCAGATAACGATTTTGCAGAAGGAGGACGAATACTCAAAGCCGTGCGGCACTTTTACAAGTGGAAGCCTTACTTCGTTTACAATAGGAACTTGGTCAGAAAGTCATGATGTTCTTGGAGTTGTTGATGACACTGATACACTACATTTTATCAAAGCAAACGGTGATGAAATAACAGGGATTGCAAGGAGGGATTTAAAAGTATCTTTACCAGTAATAAGCCTGATTGTGCAAGACGATTCTGACGTACAGAAATCTTGTCTGTGTAGCTTTATTGTGGTCACCTCTGATGGTTCCCTTCAGCATATTGAGATCAGTCAGGATCCAATTTCCACTATATATTCTGCACGCACCTCACATAATGGGTTAACTGCAAAGGGGCAGCTCTCTTGCAATGTTTTCTGCGTTGACTACCACCCAGAGCTTTCTTTGCTTGCTGGTGTCATACTAACCTCAGGATCTTGTTATCTTTCTCTCTGGCGTAGAAGTAGGATCGTTGATTTGGAACAGCTTGTTACCATTCAGTTTGAGGGTTTTTATTCGAAACCAAAAGGAATTCAGCTAGTATATCCAAAGAGAGAGATGCGGGTCAGAAGTGACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006508 GO:0006624 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec39

Protein Analysis

284

Amino Acids

31.6

Weight (kDa)

8.17

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24350 AT5G24350 AT5G24350
fragaria_vesca	FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380 FvH4_7g32380
malus_domestica	MD01G1225300.v1.1 MD07G1295800.v1.1
prunus_persica	Prupe.2G315300_v2.0.a1 Prupe.2G315300_v2.0.a1
pyrus_communis	pycom01g23370 pycom07g26850 pycom07g26860
rosa_chinensis	RchiOBHm_Chr1g0381961
rosa_laevigata	RLG00000026198
rosa_multiflora	Rmu_sc0010238.1_g000002 Rmu_sc0017430.1_g000002 Rmu_sc0017430.1_g000003
rosa_roxburghii	Rroxscaffold_4G00278310
rosa_rugosa	Rorug01G0432500
rosa_samantha	Rh1AG455700 Rh1BG412800 Rh1CG427700 Rh1DG445100
rosa_wichuraiana	Rw1G041350 Rw1G041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	242
AciI	CCGC	2 cut(s)	294, 832
AclWI	GGATC	4 cut(s)	563, 576, 712, 746
AcsI	RAATTY	1 cut(s)	801
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	2 cut(s)	167, 495
AfiI	CCNNNNNNNGG	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	8 cut(s)	108, 145, 193, 516, 631, 670, 757, 808
AluI	AGCT	8 cut(s)	108, 145, 193, 516, 631, 670, 757, 808
AlwI	GGATC	4 cut(s)	563, 576, 712, 746
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	2 cut(s)	96, 628
ApoI	RAATTY	1 cut(s)	801
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	422, 520
AsuII	TTCGAA	1 cut(s)	788
AxyI	CCTNAGG	1 cut(s)	700
BamHI	GGATCC	1 cut(s)	568
BbvI	GCAGC	2 cut(s)	108, 640
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	2 cut(s)	53, 274
BciT130I	CCWGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	809
BisI	GCNGC	3 cut(s)	97, 295, 629
BlsI	GCNGC	3 cut(s)	98, 296, 630
Bme1390I	CCNGG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	2 cut(s)	541, 570
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	206, 819
Bpu10I	CCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	788
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	458
Bse21I	CCTNAGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	646
BseAI	TCCGGA	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	2 cut(s)	160, 714
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	108, 640
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	148
BsnI	GGCC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	788
Bsp13I	TCCGGA	1 cut(s)	242
Bsp143I	GATC	5 cut(s)	113, 558, 568, 704, 738
BspACI	CCGC	2 cut(s)	294, 832
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	159, 713
BspEI	TCCGGA	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	541, 570
BspPI	GGATC	4 cut(s)	563, 576, 712, 746
BspT104I	TTCGAA	1 cut(s)	788
BsrDI	GCAATG	1 cut(s)	646
BsrI	ACTGG	1 cut(s)	458
BssMI	GATC	5 cut(s)	113, 558, 568, 704, 738
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	22, 410
BstBI	TTCGAA	1 cut(s)	788
BstC8I	GCNNGC	6 cut(s)	139, 143, 195, 224, 595, 681
BstDEI	CTNAG	2 cut(s)	146, 700
BstEII	GGTNACC	1 cut(s)	526
BstKTI	GATC	5 cut(s)	116, 561, 571, 707, 741
BstMBI	GATC	5 cut(s)	113, 558, 568, 704, 738
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 676
BstNI	CCWGG	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	108, 640
BstX2I	RGATCY	2 cut(s)	568, 704
BstYI	RGATCY	2 cut(s)	568, 704
Bsu36I	CCTNAGG	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	3 cut(s)	27, 116, 378
Cac8I	GCNNGC	6 cut(s)	139, 143, 195, 224, 595, 681
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	166, 494
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	1 cut(s)	353
CviQI	GTAC	2 cut(s)	166, 494
DdeI	CTNAG	2 cut(s)	146, 700
DpnI	GATC	5 cut(s)	115, 560, 570, 706, 740
DpnII	GATC	5 cut(s)	113, 558, 568, 704, 738
DraI	TTTAAA	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	700
Eco91I	GGTNACC	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	54
EcoO65I	GGTNACC	1 cut(s)	526
EcoRI	GAATTC	1 cut(s)	801
EcoRII	CCWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	356
FaiI	YATR	7 cut(s)	354, 552, 584, 586, 606, 692, 814
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FatI	CATG	1 cut(s)	352
FauI	CCCGC	1 cut(s)	825
Fnu4HI	GCNGC	3 cut(s)	97, 295, 629
Fsp4HI	GCNGC	3 cut(s)	97, 295, 629
FspBI	CTAG	1 cut(s)	809
GluI	GCNGC	3 cut(s)	97, 295, 629
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	1 cut(s)	356
HincII	GTYRAC	2 cut(s)	615, 655
HindII	GTYRAC	2 cut(s)	615, 655
HinfI	GANTC	1 cut(s)	485
HpaI	GTTAAC	1 cut(s)	615
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	422, 520
Hpy166II	GTNNAC	3 cut(s)	327, 615, 655
Hpy188I	TCNGA	6 cut(s)	216, 252, 346, 490, 535, 839
Hpy188III	TCNNGA	4 cut(s)	243, 353, 566, 702
Hpy8I	GTNNAC	3 cut(s)	327, 615, 655
HpyAV	CCTTC	3 cut(s)	137, 262, 554
HpyCH4III	ACNGT	2 cut(s)	22, 410
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	6 cut(s)	265, 431, 478, 593, 620, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 676
HpyF3I	CTNAG	2 cut(s)	146, 700
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	242
KspAI	GTTAAC	1 cut(s)	615
Kzo9I	GATC	5 cut(s)	113, 558, 568, 704, 738
LmnI	GCTCC	2 cut(s)	105, 159
Lsp1109I	GCAGC	2 cut(s)	108, 640
LweI	GCATC	2 cut(s)	206, 819
MaeI	CTAG	1 cut(s)	809
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	526, 760, 842
MalI	GATC	5 cut(s)	115, 560, 570, 706, 740
MboI	GATC	5 cut(s)	113, 558, 568, 704, 738
MflI	RGATCY	2 cut(s)	568, 704
MluCI	AATT	4 cut(s)	67, 182, 573, 801
MroI	TCCGGA	1 cut(s)	242
MseI	TTAA	2 cut(s)	443, 614
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	105, 676
NdeII	GATC	5 cut(s)	113, 558, 568, 704, 738
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	541, 570
NmuCI	GTSAC	2 cut(s)	526, 842
NspV	TTCGAA	1 cut(s)	788
PagI	TCATGA	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	98, 296, 630
Psp6I	CCWGG	1 cut(s)	130
PspEI	GGTNACC	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	541, 570
PspPI	GGNCC	1 cut(s)	54
PsuI	RGATCY	2 cut(s)	568, 704
RsaI	GTAC	2 cut(s)	167, 495
RsaNI	GTAC	2 cut(s)	166, 494
SaqAI	TTAA	2 cut(s)	443, 614
SatI	GCNGC	3 cut(s)	97, 295, 629
Sau3AI	GATC	5 cut(s)	113, 558, 568, 704, 738
Sau96I	GGNCC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	206, 819
SfuI	TTCGAA	1 cut(s)	788
Sse9I	AATT	4 cut(s)	67, 182, 573, 801
SsiI	CCGC	2 cut(s)	294, 832
SspMI	CTAG	1 cut(s)	809
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	22, 410
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	112, 788
TasI	AATT	4 cut(s)	67, 182, 573, 801
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	2 cut(s)	443, 614
Tru9I	TTAA	2 cut(s)	443, 614
TscAI	CASTG	3 cut(s)	27, 123, 385
TseFI	GTSAC	2 cut(s)	526, 842
TseI	GCWGC	2 cut(s)	96, 628
Tsp45I	GTSAC	2 cut(s)	526, 842
TspDTI	ATGAA	1 cut(s)	429
TspRI	CASTG	3 cut(s)	27, 123, 385
XapI	RAATTY	1 cut(s)	801
XspI	CTAG	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.