Rroxscaffold_4G00278310

Secretory pathway protein Sec39

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
1364586 .. 1375586
11001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278310.1

Sequence Viewer

Length: 6987 bp
ATGGATGAAAGGATAGACAAAGTGTTTTTTGAGACGAAACGGCACATTACTAGACCGTGTTCTCCCAATTATCCTCCTCAACAGGCAAATGATGGTGGTAAAGGGAACATTCGATCACTGCTTTCCCTTCGAGGTATCAGTCAACTCAGAGAAAAATGGAACGAATACAAGCAACCAAAAAAAATGAGAAGATTGACATCCTTGTTTATCTCTCCAAGAGGTGAGCATGTAGCTGTGGTTGCTGGAAATCAGATAACAATTTTGAAGAAGGAGGATGACTACTCAGAGCCATGTGGGACCTTTACAAGCGGCAGCCCTGCTTCATTTACAACAGGAACCTGGTCAGAAAGTCATGATGTTCTTGGTGTATCTGATGATACCGATACATTATATTTTATCAAAGCAAATGGTTCAGAGATAGTGAGAATCAGCAGGAGGCAATTAAAAGTATCTCTACCAGTGATAAGCTTGATTGTGCTGGATGATTCTGATGTACAGAAATCTTGTTTGTGTAGCTTCATTATCATTACATCTGATGGTTCCTTCCAGCATATTGAGATTAGTCAGGATCCAAGTTCCTCTATCTATTCTGCACAGATCTCACATAATGGACTAACTGTAAAGGGACAGTCCGCTCATATCGTTTTGTGCGTTGACTATCATCCAGAGCTTTCTTTGCTTACTGGTGTCACATTAACATCAGGGTCTTGTTATATTTCTCTTTGGCGTAGAAGTGGGATAATTGATCTGGAGCAGTTGTTTACTATTCAGTTTGATGGTTTTTATTCCAAACCAATAGCTCTTGGAAGTCAGCTAGCATATCCAAAGGTTCTAATCTCACCACAAGCCAAATTTGTGGCTACTTTAGATCTGACAGGAAGGTTGCACGTATTTAAGATGGATAAAGAAAGCTTTTCACTTTCAAATTTTACATGCAGAGAGAGATACGAGTCACAAGTGACAAATAATTTGTCAAGTGGAGAAGGGAAAGAGTTAATTGATATTGTTGACTTTACATGGTGGTCTGACCACATCCTTACTTTTGCAAAGCGGAGTGGCCTTGTGACCATGCTTGACCTTCTAAGTGGGTTAGAAGTAGAGGAAAATGGAACTGTATATTCTAAGCCTGTTTTAGAAAGAATAAAGTTGTTTCAAGGAAATCTGTTTCTTTTGGAAACTTTGACTTCTGATGAGAGATCTAGTTCTGATGAAACTAAAGATTCACATACGATGGAGTGGATAACTATGGACAGCCTTGACCAAATTGACATTTCCAGGTTGAACTGGAGCCTCGTATCATTTTCTGAGAGATCCGTTGTCGAAATGTATAATATTTTACTTAGAAATAAAAGGTATCGTGCTGCCTTGGAATTTGCTGATCGTCATGGGCTGGACAAAGATGAAGTTATAAAATCACAATGGTTACACTCCAACCAAGGAGCAAATGAAATAAGTACATTCTTGTCAAAGGTTAAGGATAAACATTTTGTACTCTCTGAATGTGTTGAAAAGGTTGGACCAACAGAAGATTCTGTGAGGGCTTTGCTTGTACATGGGCTGCACATAACTAACCAGTATAGGTTTTCTGAACCAGAAAATACTGAAGGTAGCCAAATTTGGGATTTCCGCATGGCTAGACTTAAGTTATTGCAATACAGTGACAGGTTGGAGACATATCTCGGGATAAATATGGGCAGGTATGTGCAATCCTCCTATAGAAATAATCATGAATATAGCAAATTTCGAGTCATGCCTATAAAAGAAGCTGCTCTAACACTGGCTGAGAGTGGGAAAATCGGAGCTTTAAACCTTCTGTTCAAGCGTCATCCTTATTCATTGGCTCCTTATGTATTGGAGATTTTAGGTTCTATCCCTGAAACAATTCCTGTGCAAACATATGGTCAACTTCTTCCTGGGAGGTCCCCTCCTACAAATATAGCAATGAGGGAAGTGGATTGGGTTGAATGTGAGAAAATGATAAGTTTTATCAACAAGACAGCCAGGGATCATGAGATCACTATCCAAATCCAGACTGAACCTATAGTCAAGCAGTGTCTAGGATCTGTTTGGCCATCCATTAATGAACTTTCAATGTGGTACAAGAAGAGAGCTAGGGATATTGACACTCTTAGCGGGCAGCTAGACAATTGTATCTCATTGCTTGAGTTCGCTCATCACAAAGGTGTTCATGAGTTGCAGCAGTTCCATGAGGATGTCTCTTACCTGCACAAACTTATTTATTCTGATGAGAGTGGTGGTGAAGTAAATTTGAGTCTTGTCATGTGGGAAGAATTATCTGATTATGATAAATTTAAAACGATGCTTAAAGGAGTTAAAGAAGAGAATATGATTGCAAGATTACATGATATGGCAGTTCCATTTATGCGAGATAGGTTTCATTATACAACCTCTGTTTCTCAAGGTTGGTTGACAGATGACCATCATGCTGCAGATGGTAATAAGGACGAGTCATTTCTGGTTCGATGGCTGAAGGAAGCTGCTTATGAGAACAAATTGGACATTTGCTTGCTGGTAATAGAGGAAGGGTGCAAAGATTTCCAAAGTAACAGCCTATTCAACGATCAGGTTGAAGCTATAGATTGTGCACTGCAGTGCATTTATCTGTGCACATCTACAGATAAATGGAGTACAATGGCAGCTATATTGTCAAAACTTCCACAAATGCAAGGTAGTGAAATATCTTTTGAGAGTCTGGAGAGAAGATTGAAACTGGCGGAAGGCCATATTGATGTTGGGAGACTCCTTGCATTTTATCAGGTACCAAAGTCGGTGAACTTTTTCTTAGAGTCTCATGCAGATGGAAAAGGTGTAAAGCAAATTCTTCGCCTTATAATTTCGAAGTTTATACGTCGGCAGCCTGGGCGTTCAGATACTGATTGGGCAACCATGTGGCGGGATATGCAATGCATTAGGGAAAAAGCATTTCCTTTTCTGGACTTGGAGTATATGTTAATGGAATTTTGCAGAGGACTGCTGAAAGCTGGGAAGTTTTCTCTTGCCAGGAATTATTTAAAGGGTACAAGTTCAGTTGCTTTGGCATCAGACAAGGCTGAGAACCTTGTCATTCAAGCTGCAAGGGAGTATTTTTTCTCAGCTTCAAGCCTTTCTTGTCCCGAAATCTGGAAGGCTAAGGAATGCCTCAATATATTTCCAAGCAGTGGAAACGTTAAAGTAGAGTCGGATATTATTGATGCACTTACATTTAGACTTCCCAGTCTAGGAGTGACTCTCTTACCCATGCAATTCAGGCAAATAAAAGATCCAATGGAGATTATCAAAATGGCAATCACAAGTCAAACTGGTGCATATATACATGTTGATGAACTCATTGAAATTGCCAAACTACTTGGATTGAGCTCTCCAGACAACATATCTTCTGTTCAGGAAGCTATTGCCAGAGAAGCTGCGGTTGCTGGTGATCTGCAATTGGCACTTGATCTCTGTCTTGTTTTGGCTAAGAAAGGACATGGTCATATTTGGGATTTATCTGCTGCAATAGCAAGGGGTCCTGCGCTTGAAAACATGGATATAAATTCTCGAAAGCAGCTACTGGGTTTTGCTTTAAGTAATTGTGATGAGGAATCAGTTAGTGAGTTGCTCTATGCATGGAAAGATCTAGATTTGCAAGGTCAGTGTGAAACATTAATGATGTTGAGTGAGACAAAATGTCCAGATTTCTCAATTCAAGGCTCCTCGATCATTACAGATTCAGCCCACAGTATACAAGATATAATCAAGCTAAAAGGTTGCTTGGAAATGGTTGAGGGAGCTAGTTGTGATGACCAAGAAGTTCATATTGGTAACATTAAGAATTCACTTTCTGCTGTTACTAAAAACCCACCTATTGATAATGGTACCTATTTGGAATCACTTTTGAGAGAAAATGGAAAAGTTTTGTCTTTTGCTGCCATACAGCTTCCTTGGTTGCTTGAACTAAGTAGGAAAACAGAACACTGTAAGAAGCGAAATACTAATGTGATTCCTGGAAAGCAGTATGTCAGTGTAAGAACACAGGCTTTGGTAACCATTCTCTCCTGGTTGGCAAGACATGGTTTAGCTCCTACAGACAATGTGGTTGCCTCTCTTGCAAAATCTATTATTGAACCACCTGTTACTGAAGAGGAATATATAGCCAGCTGCTCCTTTCTCTTGAATCTGGTGGATCCATTGAATGGGGTTGAAGTGATAGAAGAGCAGCTTAGAACAAGGAAGGATTACCAAGAAATATCTAGCATCATGAATGTGGGGATGACATATAGCTTATTATATAGTTCTGCAATTGAGTGTGAAAGTCCTATGCAAAGGAGGGAGTTGCTATTGAGGAAGTTTAAAGAGAAGCACACACAATCTAGTACTGATGAATTTGACAAATTTGACAAGGTAAAGTCTACCTTTTGGAGAGAATGGAAGTTGAAATTAGAAGACCAAAAGCGCGTTGCAGATCACTGTAGAGCATTAGAGAAAATAATTCCTGGTGTTGACACAACACGCTTTTTGTCTCGAGACTTTAATTACATTGGGAGTGTTGTTCTTCCCTTGATCGATTCTGTAAAGTTAGAGAAAAAGCACATTTTAAAGGACATTCTGAAATTAGCTGATGGCTATGGCTTGAATCGTGCAGAGGTCTTTTTACGATATCTAAGTTCTGTCCTTGTCTCTGAGGTATGGACAAATGATGATATCACAGCCGAAATTTCTGAATTTAGAGGAGAAATAGTTGACCAAGCTGTTGAAACCATCAAAGTGATCTCCTCTGCTGTGTACCCTGCAGTCGATGGATGCAACAAGTTGCGCCTTGCTTACCTGTTTGGTCTCCTTTCTGACTGCTACTTGCGACTGGAAGAAACCGGTAAAGAGTTACCAATAATACATCCTGATCAAGCACATGTCTCTGGTTTTGGATTATCTCGTTTTTACAGGTTGGTGGAGCAAGAGTGCATAAGAGTTGCCTTTATTGTGAACCTGAACTTTAAAAATATTGCTGGATTAGGTGGTTTGAACTTTAAGTGCTTAAGCTCTGAAGTTTACATGCATGTCTATGATAGTAGCTTGGAAGCTTTGTCAAAGATGATACAGACTTTTACCAGCATATATTCTGATCCGTTGCCAGAGGGTCTCATAACATGGCAGGATGTCTACAAACATTATATATGGAGTTTGCTGACAGCTTTAGAGACTAAAGCTGGAACAGCTTCCATCATCAAAAGCACTGAAACCCTTCAAGGTTTTGTATGTCAACTTGAGCAGAGCTATGAATATTGCAGAAGGTATATCAGACTCTTGGCACATGTAGATTCTTTGAACATTATGAAGCGGTATTTCACAATAATCCTACCACTTTTTGGTTCTTATGGGGGTCTACCAGATAACTCGGCATTGCAAGAATGTCTTATAATTCTCTTGAACTTTTGGATAAGATTGATTGATGAGATGAAGGAGATTGCATCCCATGAGGATGCTGGACCAAACCTCAAGCTCAATCTAGATTGCTTATTGCATTGTCTAAAAGTTTGTATGAGGTTGGTAATGGAGGACAGTGTCTCCCCTAGTCAGGGGTGGGGCACACTTGTCAGCTTTTTCAATCATGGTTTAATTGGTGAATCTGCTTCTGAACTTTATTTATTCTGTAGAGCGATGATTTTTTCTGGTTGTGGATTTGGACCTGTGGCTGAAGTATTTTCTGAAGCAGTAATTCGGGGTCCAACTGGTTTCATGTTGGTGGGAGACAGAGAAATCCAGGAACTCCCCCATCTCTACTTGAATATCTTGGAACATATTTTACAGGATGTGGTCATTAGTGAATCCCAGGAATACCAGAATTTATACCAGCTTTTGTCCTCTTTGAGTAAATTAGAAGGAGATTTGGAGGATTTGGATAAGGTCAGGAATATAATTTGGGGAAGAATGGCTGAGTTCTCTGATAACCTGCAGCTTCCCGGTTCCATTCGAGTGTTTGCTTTAGAGCTGATGCAATACCTGACCGGGAAAAATATAAAGGGTTTCTCTGCTGGGATACAATCTAGTGTTATACCGTGGGAAGGATGGGATGAGGTGCACTTTACAAATAAAAAAGGTGAGACTACTGCCAATCAGGGTTTGGCAGATCATAATGATAAATCTAACAGGTTTACAAGCACATTAGTTGCCCTCAAATCATCTCAACTTGTGGCAAATATCTCACCCACCATGGAAATTACCCCAGATGATCTCTTGAATCTGGAGACAGCTGTTTCTTGCTTCCTAAAGTTGTGTGATGTTGCTCAAAATTATTCCCATGTTGAATCTCTGCTTGCTGTTTTGGGAGAATGGGAAGGATTTTTCTTGGTGAGGGACGATAAGGACGCCTCTGTAGAAGTATCTGATGCTGGAAATGACTGGACTGAAGATAACTGGGACGAAGGATGGGAGAGTTTCCAGGAAGTAGGGCCTTCTGAGAAAGAAAACGAGAGTTCTATTTCCATTAACCCACTGCATGTGTGTTGGTTGGCGATCTTCAAGAAACTCATAACGCTCTCCCATTTTAAAGTTGTCGTAAGACTGATTGACCAGTCCTTAATTAAATCTGGTGGGATATTGCTTGATGAAGAAGAGCTTGTGAAGGGAGATCAGCAGCTTCTAGCAGGACTCGTCGTTACGAAATTCATGCACACAAATGCATCGCTTAGCCTTGTTAATATTGCCAAGGCAAGTCTCGGAAGATTTCTGGAGGTGCAGCTTAATGTTCTACATGACAAAACCACTCCGGATGAGACGCATTCACAAGATGCATTGCAGAACACTATTTCCAGGTTGAGAGGCAAGATGGAAAATCTGATCCGACATGCATTGTCATTGCTTTCAACTAACGTGGAAATTGTATTTGTAGCTGGTGATCTGTTGGGTCTAAAGGTTTCGTTGCAAATATCGGTATTGGCTCAGTTACACAAGCAGACTGGTGTCTTTCTGATTACTCTTGTTATTCACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

2328

Amino Acids

262.63

Weight (kDa)

5.43

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_KNTC1_1st PF24520 446 - 673 2e-09 KNTC1 first ARM-repeats domain
Sec39 PF08314 590 - 897 3.4e-13 Secretory pathway protein Sec39
Sec39 PF08314 938 - 1126 1.5e-14 Secretory pathway protein Sec39
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1409, 2852, 5414
AasI GACNNNNNNGTC 1 cut(s) 3234
Acc36I ACCTGC 3 cut(s) 1686, 2232, 5955
Acc65I GGTACC 2 cut(s) 2779, 3875
AccB1I GGYRCC 2 cut(s) 2779, 3875
AccB7I CCANNNNNTGG 3 cut(s) 3179, 4193, 5363
AccBSI CCGCTC 1 cut(s) 635
AccI GTMKAC 4 cut(s) 3742, 4409, 5157, 5380
AccII CGCG 1 cut(s) 4455
AccIII TCCGGA 1 cut(s) 6763
AciI CCGC 9 cut(s) 309, 633, 1051, 1627, 2133, 2735, 2914, 3428, 5335
AclI AACGTT 1 cut(s) 3186
AcoI YGGCCR 1 cut(s) 2069
AcuI CTGAAG 7 cut(s) 1623, 2510, 4158, 5061, 5712, 5724, 6423
AcyI GRCGYC 1 cut(s) 6363
AflII CTTAAG 2 cut(s) 1640, 5032
AflIII ACRYGT 3 cut(s) 3334, 4906, 5308
AgeI ACCGGT 1 cut(s) 4868
AhdI GACNNNNNGTC 1 cut(s) 3687
AjuI GAANNNNNNNTTGG 4 cut(s) 1513, 1545, 3801, 3833
AleI CACNNNNGTG 2 cut(s) 2181, 2611
AloI GAACNNNNNNTCC 2 cut(s) 6788, 6820
Alw21I GWGCWC 4 cut(s) 2608, 2630, 3380, 6078
Alw44I GTGCAC 3 cut(s) 2604, 2626, 6074
AlwNI CAGNNNCTG 2 cut(s) 2894, 3571
Ama87I CYCGRG 2 cut(s) 1679, 4521
Aor13HI TCCGGA 1 cut(s) 6763
AoxI GGCC 4 cut(s) 1057, 2069, 2740, 6446
ApaLI GTGCAC 3 cut(s) 2604, 2626, 6074
ArsI GACNNNNNNTTYG 8 cut(s) 952, 956, 984, 988, 1731, 1763, 1885, 1917
AseI ATTAAT 2 cut(s) 2079, 3665
AsiGI ACCGGT 1 cut(s) 4868
Asp700I GAANNNNTTC 4 cut(s) 1881, 2798, 5212, 5238
Asp718I GGTACC 2 cut(s) 2779, 3875
AspLEI GCGC 3 cut(s) 3535, 4455, 4815
AspS9I GGNCC 8 cut(s) 297, 1517, 1920, 3527, 5483, 5681, 5720, 6446
AsuC2I CCSGG 2 cut(s) 5958, 6004
AsuII TTCGAA 1 cut(s) 2858
AsuNHI GCTAGC 1 cut(s) 814
AvaI CYCGRG 2 cut(s) 1679, 4521
AvaII GGWCC 7 cut(s) 297, 1517, 1920, 3527, 5483, 5681, 5720
BaeGI GKGCMC 4 cut(s) 2608, 2630, 5585, 6078
BaeI ACNNNNGTAYC 4 cut(s) 2134, 2167, 2771, 2804
BalI TGGCCA 1 cut(s) 2071
BamHI GGATCC 2 cut(s) 568, 4183
BanI GGYRCC 2 cut(s) 2779, 3875
BanII GRGCYC 1 cut(s) 3380
BbsI GAAGAC 1 cut(s) 4449
Bbv12I GWGCWC 4 cut(s) 2608, 2630, 3380, 6078
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 4 cut(s) 2825, 2859, 6646, 6680
BciVI GTATCC 1 cut(s) 6027
BclI TGATCA 1 cut(s) 4897
BcnI CCSGG 2 cut(s) 5958, 6004
BfrI CTTAAG 2 cut(s) 1640, 5032
BfuAI ACCTGC 3 cut(s) 1686, 2232, 5955
BfuI GTATCC 1 cut(s) 6027
BglII AGATCT 4 cut(s) 597, 868, 1196, 3634
BlpI GCTNAGC 1 cut(s) 6683
BmcAI AGTACT 1 cut(s) 4375
Bme18I GGWCC 7 cut(s) 297, 1517, 1920, 3527, 5483, 5681, 5720
BmeRI GACNNNNNGTC 1 cut(s) 3687
BmeT110I CYCGRG 2 cut(s) 1679, 4521
BmgT120I GGNCC 8 cut(s) 297, 1517, 1920, 3527, 5483, 5681, 5720, 6446
BmrI ACTGGG 3 cut(s) 3228, 3581, 6421
BmtI GCTAGC 1 cut(s) 818
BmuI ACTGGG 3 cut(s) 3228, 3581, 6421
BoxI GACNNNNGTC 1 cut(s) 6956
BpiI GAAGAC 1 cut(s) 4449
BplI GAGNNNNNCTC 6 cut(s) 1909, 1941, 2201, 2233, 3234, 3266
BpmI CTGGAG 6 cut(s) 770, 1306, 2735, 3366, 6260, 6746
Bpu10I CCTNAGC 1 cut(s) 3150
Bpu1102I GCTNAGC 1 cut(s) 6683
Bpu14I TTCGAA 1 cut(s) 2858
BpuEI CTTGAG 4 cut(s) 2183, 2403, 5282, 5477
BpuMI CCSGG 2 cut(s) 5958, 6004
Bsa29I ATCGAT 1 cut(s) 4563
BsaAI YACGTR 1 cut(s) 889
BsaBI GATNNNNATC 3 cut(s) 196, 2018, 2439
BsaHI GRCGYC 1 cut(s) 6363
BsaI GGTCTC 2 cut(s) 4838, 5141
BsaWI WCCGGW 2 cut(s) 4868, 6763
Bse118I RCCGGY 1 cut(s) 4868
Bse3DI GCAATG 6 cut(s) 1947, 2156, 2930, 5396, 6788, 6851
Bse8I GATNNNNATC 3 cut(s) 196, 2018, 2439
BseAI TCCGGA 1 cut(s) 6763
BseCI ATCGAT 1 cut(s) 4563
BseJI GATNNNNATC 3 cut(s) 196, 2018, 2439
BseMI GCAATG 6 cut(s) 1947, 2156, 2930, 5396, 6788, 6851
BseRI GAGGAG 4 cut(s) 66, 3703, 4743, 4762
BseSI GKGCMC 4 cut(s) 2608, 2630, 5585, 6078
BseYI CCCAGC 2 cut(s) 3002, 6029
BsgI GTGCAG 5 cut(s) 576, 1544, 2210, 4659, 6752
Bsh1236I CGCG 1 cut(s) 4455
BshFI GGCC 4 cut(s) 1059, 2071, 2742, 6448
BshNI GGYRCC 2 cut(s) 2779, 3875
BshTI ACCGGT 1 cut(s) 4868
BshVI ATCGAT 1 cut(s) 4563
BsiHKAI GWGCWC 4 cut(s) 2608, 2630, 3380, 6078
BsiHKCI CYCGRG 2 cut(s) 1679, 4521
BsiSI CCGG 4 cut(s) 4869, 5958, 6003, 6764
BslFI GGGAC 6 cut(s) 310, 639, 1906, 3117, 6365, 6428
BsmBI CGTCTC 2 cut(s) 26, 6764
BsmFI GGGAC 6 cut(s) 310, 639, 1906, 3117, 6365, 6428
BsmI GAATGC 2 cut(s) 3161, 6775
BsnI GGCC 4 cut(s) 1059, 2071, 2742, 6448
Bso31I GGTCTC 2 cut(s) 4838, 5141
BsoBI CYCGRG 2 cut(s) 1679, 4521
Bsp119I TTCGAA 1 cut(s) 2858
Bsp1286I GDGCHC 5 cut(s) 2608, 2630, 3380, 5585, 6078
Bsp13I TCCGGA 1 cut(s) 6763
Bsp1407I TGTACA 2 cut(s) 493, 1549
Bsp1720I GCTNAGC 1 cut(s) 6683
Bsp19I CCATGG 1 cut(s) 6207
BspACI CCGC 9 cut(s) 309, 633, 1051, 1627, 2133, 2735, 2914, 3428, 5335
BspANI GGCC 4 cut(s) 1059, 2071, 2742, 6448
BspDI ATCGAT 1 cut(s) 4563
BspEI TCCGGA 1 cut(s) 6763
BspFNI CGCG 1 cut(s) 4455
BspHI TCATGA 5 cut(s) 352, 1726, 2008, 2188, 4257
BspMAI CTGCAG 4 cut(s) 2452, 2613, 4792, 5952
BspMI ACCTGC 3 cut(s) 1686, 2232, 5955
BspOI GCTAGC 1 cut(s) 818
BspQI GCTCTTC 2 cut(s) 4206, 6603
BspT104I TTCGAA 1 cut(s) 2858
BspT107I GGYRCC 2 cut(s) 2779, 3875
BspTI CTTAAG 2 cut(s) 1640, 5032
BspTNI GGTCTC 2 cut(s) 4838, 5141
BsrBI CCGCTC 1 cut(s) 635
BsrDI GCAATG 6 cut(s) 1947, 2156, 2930, 5396, 6788, 6851
BsrFI RCCGGY 1 cut(s) 4868
BsrGI TGTACA 2 cut(s) 493, 1549
BssAI RCCGGY 1 cut(s) 4868
BssNAI GTATAC 1 cut(s) 3743
BssNI GRCGYC 1 cut(s) 6363
BssT1I CCWWGG 5 cut(s) 1365, 1435, 3941, 6207, 6702
Bst1107I GTATAC 1 cut(s) 3743
Bst6I CTCTTC 5 cut(s) 2099, 2334, 4134, 4206, 6603
BstACI GRCGYC 1 cut(s) 6363
BstAFI CTTAAG 2 cut(s) 1640, 5032
BstAUI TGTACA 2 cut(s) 493, 1549
BstBAI YACGTR 1 cut(s) 889
BstBI TTCGAA 1 cut(s) 2858
BstC8I GCNNGC 5 cut(s) 816, 2135, 2528, 4156, 6312
BstDSI CCRYGG 2 cut(s) 6053, 6207
BstEII GGTNACC 1 cut(s) 4042
BstFNI CGCG 1 cut(s) 4455
BstHHI GCGC 3 cut(s) 3535, 4455, 4815
BstNSI RCATGY 9 cut(s) 230, 936, 3338, 4910, 5053, 5057, 5312, 6497, 6845
BstPAI GACNNNNGTC 1 cut(s) 6956
BstPI GGTNACC 1 cut(s) 4042
BstSLI GKGCMC 4 cut(s) 2608, 2630, 5585, 6078
BstUI CGCG 1 cut(s) 4455
BstV2I GAAGAC 1 cut(s) 4449
BstX2I RGATCY 9 cut(s) 568, 597, 868, 1196, 1310, 2060, 3280, 3634, 4183
BstXI CCANNNNNNTGG 1 cut(s) 856
BstYI RGATCY 9 cut(s) 568, 597, 868, 1196, 1310, 2060, 3280, 3634, 4183
BstZ17I GTATAC 1 cut(s) 3743
Bsu15I ATCGAT 1 cut(s) 4563
BsuI GTATCC 1 cut(s) 6027
BsuRI GGCC 4 cut(s) 1059, 2071, 2742, 6448
BsuTUI ATCGAT 1 cut(s) 4563
BtgI CCRYGG 2 cut(s) 6053, 6207
BtgZI GCGATG 2 cut(s) 5669, 6663
BtsI GCAGTG 6 cut(s) 116, 2057, 2606, 2618, 3184, 6488
BveI ACCTGC 3 cut(s) 1686, 2232, 5955
Cac8I GCNNGC 5 cut(s) 816, 2135, 2528, 4156, 6312
CaiI CAGNNNCTG 2 cut(s) 2894, 3571
CciI TCATGA 5 cut(s) 352, 1726, 2008, 2188, 4257
CfoI GCGC 3 cut(s) 3535, 4455, 4815
Cfr10I RCCGGY 1 cut(s) 4868
Cfr13I GGNCC 8 cut(s) 297, 1517, 1920, 3527, 5483, 5681, 5720, 6446
ClaI ATCGAT 1 cut(s) 4563
CseI GACGC 3 cut(s) 1811, 6371, 6781
CsiI ACCWGGT 1 cut(s) 338
CspAI ACCGGT 1 cut(s) 4868
CspCI CAANNNNNGTGG 2 cut(s) 6849, 6884
DraI TTTAAA 7 cut(s) 1806, 2314, 3033, 4351, 4596, 4993, 6544
DrdI GACNNNNNNGTC 1 cut(s) 3234
DriI GACNNNNNGTC 1 cut(s) 3687
DseDI GACNNNNNNGTC 1 cut(s) 3234
EaeI YGGCCR 1 cut(s) 2069
Eam1104I CTCTTC 5 cut(s) 2099, 2334, 4134, 4206, 6603
Eam1105I GACNNNNNGTC 1 cut(s) 3687
EarI CTCTTC 5 cut(s) 2099, 2334, 4134, 4206, 6603
EciI GGCGGA 1 cut(s) 2750
Ecl136II GAGCTC 1 cut(s) 3378
Eco130I CCWWGG 5 cut(s) 1365, 1435, 3941, 6207, 6702
Eco24I GRGCYC 1 cut(s) 3380
Eco31I GGTCTC 2 cut(s) 4838, 5141
Eco32I GATATC 2 cut(s) 4658, 4702
Eco47I GGWCC 7 cut(s) 297, 1517, 1920, 3527, 5483, 5681, 5720
Eco53kI GAGCTC 1 cut(s) 3378
Eco57I CTGAAG 7 cut(s) 1623, 2510, 4158, 5061, 5712, 5724, 6423
Eco88I CYCGRG 2 cut(s) 1679, 4521
Eco91I GGTNACC 1 cut(s) 4042
EcoICRI GAGCTC 1 cut(s) 3378
EcoO109I RGGNCCY 4 cut(s) 297, 1920, 3527, 6446
EcoO65I GGTNACC 1 cut(s) 4042
EcoRI GAATTC 1 cut(s) 3832
EcoRV GATATC 2 cut(s) 4658, 4702
EcoT14I CCWWGG 5 cut(s) 1365, 1435, 3941, 6207, 6702
EcoT22I ATGCAT 6 cut(s) 2930, 3628, 5055, 6679, 6790, 6847
EcoT38I GRGCYC 1 cut(s) 3380
ErhI CCWWGG 5 cut(s) 1365, 1435, 3941, 6207, 6702
Esp3I CGTCTC 2 cut(s) 26, 6764
FaqI GGGAC 6 cut(s) 310, 639, 1906, 3117, 6365, 6428
FauI CCCGC 2 cut(s) 2126, 2907
FauNDI CATATG 1 cut(s) 1897
FbaI TGATCA 1 cut(s) 4897
FblI GTMKAC 4 cut(s) 3742, 4409, 5157, 5380
FriOI GRGCYC 1 cut(s) 3380
GlaI GCGC 3 cut(s) 3534, 4454, 4814
GsaI CCCAGC 2 cut(s) 3006, 6033
GsuI CTGGAG 6 cut(s) 770, 1306, 2735, 3366, 6260, 6746
HaeIII GGCC 4 cut(s) 1059, 2071, 2742, 6448
HapII CCGG 4 cut(s) 4869, 5958, 6003, 6764
HgaI GACGC 3 cut(s) 1811, 6371, 6781
HhaI GCGC 3 cut(s) 3535, 4455, 4815
Hin1I GRCGYC 1 cut(s) 6363
Hin6I GCGC 3 cut(s) 3533, 4453, 4813
HinP1I GCGC 3 cut(s) 3533, 4453, 4813
HincII GTYRAC 8 cut(s) 143, 655, 1009, 1904, 2430, 4501, 4741, 5258
HindII GTYRAC 8 cut(s) 143, 655, 1009, 1904, 2430, 4501, 4741, 5258
HindIII AAGCTT 3 cut(s) 466, 910, 5076
HpaII CCGG 4 cut(s) 4869, 5958, 6003, 6764
Hpy99I CGWCG 2 cut(s) 2874, 6653
HpyCH4IV ACGT 4 cut(s) 888, 2869, 3186, 6867
HpySE526I ACGT 4 cut(s) 888, 2869, 3186, 6867
Hsp92I GRCGYC 1 cut(s) 6363
HspAI GCGC 3 cut(s) 3533, 4453, 4813
Kpn2I TCCGGA 1 cut(s) 6763
KpnI GGTACC 2 cut(s) 2783, 3879
Ksp22I TGATCA 1 cut(s) 4897
LguI GCTCTTC 2 cut(s) 4206, 6603
MabI ACCWGGT 1 cut(s) 338
MaeII ACGT 4 cut(s) 888, 2869, 3186, 6867
MbiI CCGCTC 1 cut(s) 635
MfeI CAATTG 3 cut(s) 2146, 3446, 4299
MflI RGATCY 9 cut(s) 568, 597, 868, 1196, 1310, 2060, 3280, 3634, 4183
MhlI GDGCHC 5 cut(s) 2608, 2630, 3380, 5585, 6078
MlsI TGGCCA 1 cut(s) 2071
MluNI TGGCCA 1 cut(s) 2071
MmeI TCCRAC 6 cut(s) 1455, 1495, 1647, 3180, 5747, 6862
Mox20I TGGCCA 1 cut(s) 2071
Mph1103I ATGCAT 6 cut(s) 2930, 3628, 5055, 6679, 6790, 6847
MroI TCCGGA 1 cut(s) 6763
MroXI GAANNNNTTC 4 cut(s) 1881, 2798, 5212, 5238
MscI TGGCCA 1 cut(s) 2071
Msp20I TGGCCA 1 cut(s) 2071
MspA1I CMGCKG 2 cut(s) 4158, 6248
MspCI CTTAAG 2 cut(s) 1640, 5032
MspI CCGG 4 cut(s) 4869, 5958, 6003, 6764
MunI CAATTG 3 cut(s) 2146, 3446, 4299
Mva1269I GAATGC 2 cut(s) 3161, 6775
MvnI CGCG 1 cut(s) 4455
NciI CCSGG 2 cut(s) 5958, 6004
NcoI CCATGG 1 cut(s) 6207
NdeI CATATG 1 cut(s) 1897
NheI GCTAGC 1 cut(s) 814
NmeAIII GCCGAG 1 cut(s) 5372
NmuCI GTSAC 6 cut(s) 688, 951, 958, 1063, 1658, 3244
NsiI ATGCAT 6 cut(s) 2930, 3628, 5055, 6679, 6790, 6847
NspI RCATGY 9 cut(s) 230, 936, 3338, 4910, 5053, 5057, 5312, 6497, 6845
NspV TTCGAA 1 cut(s) 2858
OliI CACNNNNGTG 2 cut(s) 2181, 2611
PacI TTAATTAA 1 cut(s) 6579
PaeR7I CTCGAG 1 cut(s) 4521
PagI TCATGA 5 cut(s) 352, 1726, 2008, 2188, 4257
PciI ACATGT 3 cut(s) 3334, 4906, 5308
PciSI GCTCTTC 2 cut(s) 4206, 6603
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PctI GAATGC 2 cut(s) 3161, 6775
PdmI GAANNNNTTC 4 cut(s) 1881, 2798, 5212, 5238
PflFI GACNNNGTC 2 cut(s) 3489, 5558
PflMI CCANNNNNTGG 3 cut(s) 3179, 4193, 5363
PfoI TCCNGGA 3 cut(s) 4003, 5757, 6435
PinAI ACCGGT 1 cut(s) 4868
Ppu21I YACGTR 1 cut(s) 889
PpuMI RGGWCCY 3 cut(s) 297, 1920, 3527
PscI ACATGT 3 cut(s) 3334, 4906, 5308
PshAI GACNNNNGTC 1 cut(s) 6956
PshBI ATTAAT 2 cut(s) 2079, 3665
PsiI TTATAA 3 cut(s) 1409, 2852, 5414
Psp124BI GAGCTC 1 cut(s) 3380
Psp1406I AACGTT 1 cut(s) 3186
Psp5II RGGWCCY 3 cut(s) 297, 1920, 3527
PspEI GGTNACC 1 cut(s) 4042
PspFI CCCAGC 2 cut(s) 3002, 6029
PspPI GGNCC 8 cut(s) 297, 1517, 1920, 3527, 5483, 5681, 5720, 6446
PspPPI RGGWCCY 3 cut(s) 297, 1920, 3527
PsrI GAACNNNNNNTAC 2 cut(s) 5784, 5816
PstI CTGCAG 4 cut(s) 2452, 2613, 4792, 5952
PstNI CAGNNNCTG 2 cut(s) 2894, 3571
PsuI RGATCY 9 cut(s) 568, 597, 868, 1196, 1310, 2060, 3280, 3634, 4183
PsyI GACNNNGTC 2 cut(s) 3489, 5558
PvuII CAGCTG 2 cut(s) 4158, 6248
SacI GAGCTC 1 cut(s) 3380
SapI GCTCTTC 2 cut(s) 4206, 6603
Sau96I GGNCC 8 cut(s) 297, 1517, 1920, 3527, 5483, 5681, 5720, 6446
ScaI AGTACT 1 cut(s) 4375
SduI GDGCHC 5 cut(s) 2608, 2630, 3380, 5585, 6078
SexAI ACCWGGT 1 cut(s) 338
Sfr274I CTCGAG 1 cut(s) 4521
SfuI TTCGAA 1 cut(s) 2858
SinI GGWCC 7 cut(s) 297, 1517, 1920, 3527, 5483, 5681, 5720
SlaI CTCGAG 1 cut(s) 4521
SmlI CTYRAG 7 cut(s) 1640, 2162, 2418, 4521, 5032, 5261, 5492
SmoI CTYRAG 7 cut(s) 1640, 2162, 2418, 4521, 5032, 5261, 5492
SsiI CCGC 9 cut(s) 309, 633, 1051, 1627, 2133, 2735, 2914, 3428, 5335
SspI AATATT 4 cut(s) 1333, 4999, 5279, 6697
SstI GAGCTC 1 cut(s) 3380
StyI CCWWGG 5 cut(s) 1365, 1435, 3941, 6207, 6702
TaiI ACGT 4 cut(s) 891, 2872, 3189, 6870
TatI WGTACW 6 cut(s) 493, 1454, 1489, 1549, 2648, 4373
TauI GCSGC 1 cut(s) 312
TseFI GTSAC 6 cut(s) 688, 951, 958, 1063, 1658, 3244
Tsp45I GTSAC 6 cut(s) 688, 951, 958, 1063, 1658, 3244
TspGWI ACGGA 2 cut(s) 1303, 5112
Tth111I GACNNNGTC 2 cut(s) 3489, 5558
Van91I CCANNNNNTGG 3 cut(s) 3179, 4193, 5363
Vha464I CTTAAG 2 cut(s) 1640, 5032
VneI GTGCAC 3 cut(s) 2604, 2626, 6074
VpaK11BI GGWCC 7 cut(s) 297, 1517, 1920, 3527, 5483, 5681, 5720
VspI ATTAAT 2 cut(s) 2079, 3665
XbaI TCTAGA 2 cut(s) 3637, 5503
XceI RCATGY 9 cut(s) 230, 936, 3338, 4910, 5053, 5057, 5312, 6497, 6845
XcmI CCANNNNNNNNNTGG 3 cut(s) 2750, 5477, 6115
XhoI CTCGAG 1 cut(s) 4521
XmiI GTMKAC 4 cut(s) 3742, 4409, 5157, 5380
XmnI GAANNNNTTC 4 cut(s) 1881, 2798, 5212, 5238
ZrmI AGTACT 1 cut(s) 4375
Zsp2I ATGCAT 6 cut(s) 2930, 3628, 5055, 6679, 6790, 6847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.