No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49490 |
| fragaria_vesca | FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 |
| malus_domestica | MD01G1229500.v1.1 MD07G1301500.v1.1 |
| prunus_persica | Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 |
| pyrus_communis | pycom01g23760 pycom07g27420 |
| rosa_chinensis | RchiOBHm_Chr1g0383041 |
| rosa_laevigata | RLG00000026136 |
| rosa_roxburghii | Rroxscaffold_1G00018270 Rroxscaffold_4G00277660 |
| rosa_rugosa | Rorug01G0437900 |
| rosa_samantha | Rh1AG463600 Rh1BG420700 Rh1CG434200 Rh1DG453300 Rh5BG423200 |
| rosa_wichuraiana | Rw1G040860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2388, 3353 |
| AatII | GACGTC | 1 cut(s) | 2534 |
| Acc36I | ACCTGC | 1 cut(s) | 2055 |
| AccB1I | GGYRCC | 1 cut(s) | 2962 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 911 |
| AciI | CCGC | 4 cut(s) | 867, 1442, 2190, 3299 |
| AclWI | GGATC | 5 cut(s) | 257, 437, 646, 1274, 3241 |
| AcoI | YGGCCR | 5 cut(s) | 1690, 2604, 2823, 3202, 3344 |
| AcuI | CTGAAG | 7 cut(s) | 909, 1062, 1524, 2382, 2742, 3114, 3227 |
| AcyI | GRCGYC | 1 cut(s) | 2531 |
| AfaI | GTAC | 4 cut(s) | 557, 812, 1014, 2339 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 93, 346, 464, 760, 911, 938, 2777, 3555 |
| AflII | CTTAAG | 1 cut(s) | 2620 |
| AflIII | ACRYGT | 1 cut(s) | 3562 |
| AhlI | ACTAGT | 1 cut(s) | 275 |
| AleI | CACNNNNGTG | 1 cut(s) | 660 |
| Alw21I | GWGCWC | 1 cut(s) | 657 |
| Alw26I | GTCTC | 7 cut(s) | 20, 495, 974, 1145, 1688, 2838, 2962 |
| AlwI | GGATC | 5 cut(s) | 257, 437, 646, 1274, 3241 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 719, 911, 1936, 2492 |
| Ama87I | CYCGRG | 2 cut(s) | 2354, 3161 |
| AoxI | GGCC | 8 cut(s) | 166, 1690, 2022, 2177, 2604, 2823, 3202, 3344 |
| ApeKI | GCWGC | 7 cut(s) | 269, 974, 1439, 1969, 2479, 2657, 3292 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1510, 1542, 1661, 1693 |
| AseI | ATTAAT | 1 cut(s) | 2382 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1362, 2301 |
| AspLEI | GCGC | 2 cut(s) | 2657, 3136 |
| AspS9I | GGNCC | 4 cut(s) | 1625, 2177, 2626, 3476 |
| AsuC2I | CCSGG | 2 cut(s) | 2849, 3064 |
| AsuHPI | GGTGA | 4 cut(s) | 71, 674, 2084, 2681 |
| AvaI | CYCGRG | 2 cut(s) | 2354, 3161 |
| AvaII | GGWCC | 3 cut(s) | 1625, 2626, 3476 |
| AxyI | CCTNAGG | 1 cut(s) | 759 |
| BalI | TGGCCA | 3 cut(s) | 1692, 2606, 2825 |
| BanI | GGYRCC | 1 cut(s) | 2962 |
| BauI | CACGAG | 1 cut(s) | 3142 |
| BbsI | GAAGAC | 3 cut(s) | 536, 870, 1595 |
| Bbv12I | GWGCWC | 1 cut(s) | 657 |
| BbvCI | CCTCAGC | 3 cut(s) | 883, 2310, 3450 |
| BbvI | GCAGC | 7 cut(s) | 256, 986, 1426, 1956, 2491, 2644, 3304 |
| BccI | CCATC | 6 cut(s) | 82, 124, 193, 762, 3305, 3467 |
| BceAI | ACGGC | 2 cut(s) | 2164, 3331 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 251, 285 |
| BclI | TGATCA | 2 cut(s) | 250, 2037 |
| BcnI | CCSGG | 2 cut(s) | 2849, 3064 |
| BcoDI | GTCTC | 7 cut(s) | 20, 495, 974, 1145, 1688, 2838, 2962 |
| BcuI | ACTAGT | 1 cut(s) | 275 |
| BfaI | CTAG | 8 cut(s) | 6, 276, 363, 846, 897, 1008, 1385, 3192 |
| BfmI | CTRYAG | 4 cut(s) | 170, 1839, 1863, 3126 |
| BfoI | RGCGCY | 1 cut(s) | 2658 |
| BfrI | CTTAAG | 1 cut(s) | 2620 |
| BfuAI | ACCTGC | 1 cut(s) | 2055 |
| BglII | AGATCT | 1 cut(s) | 1535 |
| BisI | GCNGC | 7 cut(s) | 270, 975, 1440, 1970, 2480, 2658, 3293 |
| BlsI | GCNGC | 7 cut(s) | 271, 976, 1441, 1971, 2481, 2659, 3294 |
| Bme18I | GGWCC | 3 cut(s) | 1625, 2626, 3476 |
| BmeT110I | CYCGRG | 2 cut(s) | 2354, 3161 |
| BmgT120I | GGNCC | 4 cut(s) | 1625, 2177, 2626, 3476 |
| BmiI | GGNNCC | 4 cut(s) | 351, 2178, 2627, 2964 |
| BpiI | GAAGAC | 3 cut(s) | 536, 870, 1595 |
| BpmI | CTGGAG | 1 cut(s) | 2549 |
| Bpu10I | CCTNAGC | 4 cut(s) | 883, 2310, 2541, 3450 |
| BpuEI | CTTGAG | 1 cut(s) | 2310 |
| BpuMI | CCSGG | 2 cut(s) | 2849, 3064 |
| BsaHI | GRCGYC | 1 cut(s) | 2531 |
| BsaI | GGTCTC | 2 cut(s) | 1688, 2838 |
| BsaJI | CCNNGG | 9 cut(s) | 342, 399, 1154, 1155, 1704, 2682, 3341, 3509, 3549 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 93, 346, 464, 760, 911, 938, 2777, 3555 |
| Bse118I | RCCGGY | 1 cut(s) | 3481 |
| Bse1I | ACTGG | 5 cut(s) | 234, 905, 916, 2221, 3205 |
| Bse21I | CCTNAGG | 1 cut(s) | 759 |
| Bse3DI | GCAATG | 1 cut(s) | 1402 |
| BseDI | CCNNGG | 9 cut(s) | 342, 399, 1154, 1155, 1704, 2682, 3341, 3509, 3549 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 93, 346, 464, 760, 911, 938, 2777, 3555 |
| BseMI | GCAATG | 1 cut(s) | 1402 |
| BseNI | ACTGG | 5 cut(s) | 234, 905, 916, 2221, 3205 |
| BseRI | GAGGAG | 4 cut(s) | 447, 3174, 3467, 3590 |
| BseXI | GCAGC | 7 cut(s) | 256, 986, 1426, 1956, 2491, 2644, 3304 |
| BseYI | CCCAGC | 1 cut(s) | 2109 |
| BsgI | GTGCAG | 3 cut(s) | 669, 2187, 2802 |
| BshFI | GGCC | 8 cut(s) | 168, 1692, 2024, 2179, 2606, 2825, 3204, 3346 |
| BshNI | GGYRCC | 1 cut(s) | 2962 |
| BsiHKAI | GWGCWC | 1 cut(s) | 657 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2354, 3161 |
| BsiSI | CCGG | 5 cut(s) | 2848, 3064, 3201, 3302, 3482 |
| BslFI | GGGAC | 3 cut(s) | 1682, 2092, 2639 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 93, 346, 464, 760, 911, 938, 2777, 3555 |
| BsmAI | GTCTC | 7 cut(s) | 20, 495, 974, 1145, 1688, 2838, 2962 |
| BsmFI | GGGAC | 3 cut(s) | 1682, 2092, 2639 |
| BsmI | GAATGC | 1 cut(s) | 3280 |
| BsnI | GGCC | 8 cut(s) | 168, 1692, 2024, 2179, 2606, 2825, 3204, 3346 |
| Bso31I | GGTCTC | 2 cut(s) | 1688, 2838 |
| BsoBI | CYCGRG | 2 cut(s) | 2354, 3161 |
| Bsp1286I | GDGCHC | 1 cut(s) | 657 |
| Bsp1407I | TGTACA | 3 cut(s) | 555, 1012, 2337 |
| Bsp19I | CCATGG | 1 cut(s) | 1704 |
| BspACI | CCGC | 4 cut(s) | 867, 1442, 2190, 3299 |
| BspANI | GGCC | 8 cut(s) | 168, 1692, 2024, 2179, 2606, 2825, 3204, 3346 |
| BspHI | TCATGA | 2 cut(s) | 783, 3412 |
| BspLI | GGNNCC | 4 cut(s) | 351, 2178, 2627, 2964 |
| BspMAI | CTGCAG | 3 cut(s) | 174, 1867, 3130 |
| BspMI | ACCTGC | 1 cut(s) | 2055 |
| BspPI | GGATC | 5 cut(s) | 257, 437, 646, 1274, 3241 |
| BspQI | GCTCTTC | 3 cut(s) | 1113, 3282, 3550 |
| BspT107I | GGYRCC | 1 cut(s) | 2962 |
| BspTI | CTTAAG | 1 cut(s) | 2620 |
| BspTNI | GGTCTC | 2 cut(s) | 1688, 2838 |
| BsrDI | GCAATG | 1 cut(s) | 1402 |
| BsrFI | RCCGGY | 1 cut(s) | 3481 |
| BsrGI | TGTACA | 3 cut(s) | 555, 1012, 2337 |
| BsrI | ACTGG | 5 cut(s) | 234, 905, 916, 2221, 3205 |
| BssAI | RCCGGY | 1 cut(s) | 3481 |
| BssECI | CCNNGG | 9 cut(s) | 342, 399, 1154, 1155, 1704, 2682, 3341, 3509, 3549 |
| BssNI | GRCGYC | 1 cut(s) | 2531 |
| BssSI | CACGAG | 1 cut(s) | 3142 |
| BssT1I | CCWWGG | 3 cut(s) | 399, 1704, 2682 |
| Bst2BI | CACGAG | 1 cut(s) | 3142 |
| Bst6I | CTCTTC | 4 cut(s) | 1113, 1526, 3282, 3550 |
| BstACI | GRCGYC | 1 cut(s) | 2531 |
| BstAFI | CTTAAG | 1 cut(s) | 2620 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1871 |
| BstAUI | TGTACA | 3 cut(s) | 555, 1012, 2337 |
| BstC8I | GCNNGC | 4 cut(s) | 166, 170, 1836, 3022 |
| BstDSI | CCRYGG | 2 cut(s) | 342, 1704 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2775 |
| BstH2I | RGCGCY | 1 cut(s) | 2658 |
| BstHHI | GCGC | 2 cut(s) | 2657, 3136 |
| BstMAI | GTCTC | 7 cut(s) | 20, 495, 974, 1145, 1688, 2838, 2962 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 67, 1871, 2030, 3026, 3201, 3298 |
| BstNSI | RCATGY | 4 cut(s) | 1826, 1838, 3280, 3566 |
| BstSFI | CTRYAG | 4 cut(s) | 170, 1839, 1863, 3126 |
| BstV1I | GCAGC | 7 cut(s) | 256, 986, 1426, 1956, 2491, 2644, 3304 |
| BstV2I | GAAGAC | 3 cut(s) | 536, 870, 1595 |
| BstX2I | RGATCY | 4 cut(s) | 638, 1279, 1535, 3246 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1496 |
| BstYI | RGATCY | 4 cut(s) | 638, 1279, 1535, 3246 |
| Bsu36I | CCTNAGG | 1 cut(s) | 759 |
| BsuRI | GGCC | 8 cut(s) | 168, 1692, 2024, 2179, 2606, 2825, 3204, 3346 |
| BtgI | CCRYGG | 2 cut(s) | 342, 1704 |
| BtgZI | GCGATG | 1 cut(s) | 1803 |
| BtsI | GCAGTG | 2 cut(s) | 222, 2118 |
| BveI | ACCTGC | 1 cut(s) | 2055 |
| Cac8I | GCNNGC | 4 cut(s) | 166, 170, 1836, 3022 |
| CaiI | CAGNNNCTG | 4 cut(s) | 719, 911, 1936, 2492 |
| CciI | TCATGA | 2 cut(s) | 783, 3412 |
| CfoI | GCGC | 2 cut(s) | 2657, 3136 |
| Cfr10I | RCCGGY | 1 cut(s) | 3481 |
| Cfr13I | GGNCC | 4 cut(s) | 1625, 2177, 2626, 3476 |
| CseI | GACGC | 1 cut(s) | 3026 |
| Csp6I | GTAC | 4 cut(s) | 556, 811, 1013, 2338 |
| CviQI | GTAC | 4 cut(s) | 556, 811, 1013, 2338 |
| DraI | TTTAAA | 1 cut(s) | 1171 |
| EaeI | YGGCCR | 5 cut(s) | 1690, 2604, 2823, 3202, 3344 |
| Eam1104I | CTCTTC | 4 cut(s) | 1113, 1526, 3282, 3550 |
| EarI | CTCTTC | 4 cut(s) | 1113, 1526, 3282, 3550 |
| EciI | GGCGGA | 1 cut(s) | 2179 |
| Eco130I | CCWWGG | 3 cut(s) | 399, 1704, 2682 |
| Eco147I | AGGCCT | 1 cut(s) | 168 |
| Eco31I | GGTCTC | 2 cut(s) | 1688, 2838 |
| Eco32I | GATATC | 1 cut(s) | 3123 |
| Eco47I | GGWCC | 3 cut(s) | 1625, 2626, 3476 |
| Eco57I | CTGAAG | 7 cut(s) | 909, 1062, 1524, 2382, 2742, 3114, 3227 |
| Eco81I | CCTNAGG | 1 cut(s) | 759 |
| Eco88I | CYCGRG | 2 cut(s) | 2354, 3161 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2775 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1625, 2626 |
| EcoRI | GAATTC | 1 cut(s) | 49 |
| EcoRV | GATATC | 1 cut(s) | 3123 |
| EcoT14I | CCWWGG | 3 cut(s) | 399, 1704, 2682 |
| EcoT22I | ATGCAT | 1 cut(s) | 3282 |
| ErhI | CCWWGG | 3 cut(s) | 399, 1704, 2682 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3087, 3119 |
| FaqI | GGGAC | 3 cut(s) | 1682, 2092, 2639 |
| FauNDI | CATATG | 1 cut(s) | 1987 |
| FbaI | TGATCA | 2 cut(s) | 250, 2037 |
| Fnu4HI | GCNGC | 7 cut(s) | 270, 975, 1440, 1970, 2480, 2658, 3293 |
| Fsp4HI | GCNGC | 7 cut(s) | 270, 975, 1440, 1970, 2480, 2658, 3293 |
| FspBI | CTAG | 8 cut(s) | 6, 276, 363, 846, 897, 1008, 1385, 3192 |
| GlaI | GCGC | 2 cut(s) | 2656, 3135 |
| GluI | GCNGC | 7 cut(s) | 270, 975, 1440, 1970, 2480, 2658, 3293 |
| GsaI | CCCAGC | 1 cut(s) | 2113 |
| GsuI | CTGGAG | 1 cut(s) | 2549 |
| HaeII | RGCGCY | 1 cut(s) | 2658 |
| HaeIII | GGCC | 8 cut(s) | 168, 1692, 2024, 2179, 2606, 2825, 3204, 3346 |
| HapII | CCGG | 5 cut(s) | 2848, 3064, 3201, 3302, 3482 |
| HgaI | GACGC | 1 cut(s) | 3026 |
| HhaI | GCGC | 2 cut(s) | 2657, 3136 |
| Hin1I | GRCGYC | 1 cut(s) | 2531 |
| Hin6I | GCGC | 2 cut(s) | 2655, 3134 |
| HinP1I | GCGC | 2 cut(s) | 2655, 3134 |
| HincII | GTYRAC | 2 cut(s) | 381, 2521 |
| HindII | GTYRAC | 2 cut(s) | 381, 2521 |
| HindIII | AAGCTT | 3 cut(s) | 629, 1883, 2811 |
| HpaII | CCGG | 5 cut(s) | 2848, 3064, 3201, 3302, 3482 |
| HphI | GGTGA | 4 cut(s) | 71, 674, 2084, 2681 |
| Hpy166II | GTNNAC | 7 cut(s) | 381, 494, 1013, 1300, 2142, 2521, 3479 |
| Hpy8I | GTNNAC | 7 cut(s) | 381, 494, 1013, 1300, 2142, 2521, 3479 |
| Hpy99I | CGWCG | 3 cut(s) | 2810, 3238, 3529 |
| HpyCH4IV | ACGT | 3 cut(s) | 1791, 2531, 3233 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 67, 1871, 2030, 3026, 3201, 3298 |
| HpySE526I | ACGT | 3 cut(s) | 1791, 2531, 3233 |
| Hsp92I | GRCGYC | 1 cut(s) | 2531 |
| HspAI | GCGC | 2 cut(s) | 2655, 3134 |
| Ksp22I | TGATCA | 2 cut(s) | 250, 2037 |
| LguI | GCTCTTC | 3 cut(s) | 1113, 3282, 3550 |
| LmnI | GCTCC | 3 cut(s) | 400, 484, 2684 |
| Lsp1109I | GCAGC | 7 cut(s) | 256, 986, 1426, 1956, 2491, 2644, 3304 |
| MaeI | CTAG | 8 cut(s) | 6, 276, 363, 846, 897, 1008, 1385, 3192 |
| MaeII | ACGT | 3 cut(s) | 1791, 2531, 3233 |
| MaeIII | GTNAC | 7 cut(s) | 721, 907, 1634, 1796, 2212, 2237, 3229 |
| MfeI | CAATTG | 1 cut(s) | 2000 |
| MflI | RGATCY | 4 cut(s) | 638, 1279, 1535, 3246 |
| MhlI | GDGCHC | 1 cut(s) | 657 |
| MlsI | TGGCCA | 3 cut(s) | 1692, 2606, 2825 |
| MluNI | TGGCCA | 3 cut(s) | 1692, 2606, 2825 |
| MlyI | GAGTC | 5 cut(s) | 1028, 1295, 1595, 2263, 3418 |
| MmeI | TCCRAC | 3 cut(s) | 1711, 2576, 3548 |
| Mox20I | TGGCCA | 3 cut(s) | 1692, 2606, 2825 |
| Mph1103I | ATGCAT | 1 cut(s) | 3282 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1362, 2301 |
| MscI | TGGCCA | 3 cut(s) | 1692, 2606, 2825 |
| MslI | CAYNNNNRTG | 1 cut(s) | 660 |
| Msp20I | TGGCCA | 3 cut(s) | 1692, 2606, 2825 |
| MspA1I | CMGCKG | 2 cut(s) | 977, 1295 |
| MspCI | CTTAAG | 1 cut(s) | 2620 |
| MspI | CCGG | 5 cut(s) | 2848, 3064, 3201, 3302, 3482 |
| MunI | CAATTG | 1 cut(s) | 2000 |
| Mva1269I | GAATGC | 1 cut(s) | 3280 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 67, 1871, 2030, 3026, 3201, 3298 |
| NciI | CCSGG | 2 cut(s) | 2849, 3064 |
| NcoI | CCATGG | 1 cut(s) | 1704 |
| NdeI | CATATG | 1 cut(s) | 1987 |
| NlaIV | GGNNCC | 4 cut(s) | 351, 2178, 2627, 2964 |
| NmeAIII | GCCGAG | 1 cut(s) | 2939 |
| NmuCI | GTSAC | 3 cut(s) | 721, 1796, 2237 |
| NsiI | ATGCAT | 1 cut(s) | 3282 |
| NspI | RCATGY | 4 cut(s) | 1826, 1838, 3280, 3566 |
| OliI | CACNNNNGTG | 1 cut(s) | 660 |
| PaeI | GCATGC | 1 cut(s) | 1838 |
| PaeR7I | CTCGAG | 1 cut(s) | 2354 |
| PagI | TCATGA | 2 cut(s) | 783, 3412 |
| PasI | CCCWGGG | 1 cut(s) | 1155 |
| PceI | AGGCCT | 1 cut(s) | 168 |
| PciI | ACATGT | 1 cut(s) | 3562 |
| PciSI | GCTCTTC | 3 cut(s) | 1113, 3282, 3550 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2401, 3465 |
| PctI | GAATGC | 1 cut(s) | 3280 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1362, 2301 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 911 |
| PfoI | TCCNGGA | 5 cut(s) | 1081, 2565, 2979, 3062, 3174 |
| PkrI | GCNGC | 7 cut(s) | 271, 976, 1441, 1971, 2481, 2659, 3294 |
| PleI | GAGTC | 5 cut(s) | 1027, 1295, 1595, 2263, 3417 |
| PpsI | GAGTC | 5 cut(s) | 1027, 1295, 1595, 2263, 3417 |
| PpuMI | RGGWCCY | 2 cut(s) | 1625, 2626 |
| PscI | ACATGT | 1 cut(s) | 3562 |
| PshBI | ATTAAT | 1 cut(s) | 2382 |
| PsiI | TTATAA | 2 cut(s) | 2388, 3353 |
| Psp5II | RGGWCCY | 2 cut(s) | 1625, 2626 |
| PspFI | CCCAGC | 1 cut(s) | 2109 |
| PspN4I | GGNNCC | 4 cut(s) | 351, 2178, 2627, 2964 |
| PspPI | GGNCC | 4 cut(s) | 1625, 2177, 2626, 3476 |
| PspPPI | RGGWCCY | 2 cut(s) | 1625, 2626 |
| PspXI | VCTCGAGB | 1 cut(s) | 2354 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 803, 835 |
| PstI | CTGCAG | 3 cut(s) | 174, 1867, 3130 |
| PstNI | CAGNNNCTG | 4 cut(s) | 719, 911, 1936, 2492 |
| PsuI | RGATCY | 4 cut(s) | 638, 1279, 1535, 3246 |
| PvuII | CAGCTG | 2 cut(s) | 977, 1295 |
| RsaI | GTAC | 4 cut(s) | 557, 812, 1014, 2339 |
| RsaNI | GTAC | 4 cut(s) | 556, 811, 1013, 2338 |
| RseI | CAYNNNNRTG | 1 cut(s) | 660 |
| SapI | GCTCTTC | 3 cut(s) | 1113, 3282, 3550 |
| SatI | GCNGC | 7 cut(s) | 270, 975, 1440, 1970, 2480, 2658, 3293 |
| Sau96I | GGNCC | 4 cut(s) | 1625, 2177, 2626, 3476 |
| SchI | GAGTC | 5 cut(s) | 1028, 1295, 1595, 2263, 3418 |
| SduI | GDGCHC | 1 cut(s) | 657 |
| SfcI | CTRYAG | 4 cut(s) | 170, 1839, 1863, 3126 |
| Sfr274I | CTCGAG | 1 cut(s) | 2354 |
| SinI | GGWCC | 3 cut(s) | 1625, 2626, 3476 |
| SlaI | CTCGAG | 1 cut(s) | 2354 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 660 |
| SmlI | CTYRAG | 3 cut(s) | 2325, 2354, 2620 |
| SmoI | CTYRAG | 3 cut(s) | 2325, 2354, 2620 |
| SpeI | ACTAGT | 1 cut(s) | 275 |
| SphI | GCATGC | 1 cut(s) | 1838 |
| SseBI | AGGCCT | 1 cut(s) | 168 |
| SsiI | CCGC | 4 cut(s) | 867, 1442, 2190, 3299 |
| SspI | AATATT | 3 cut(s) | 613, 1907, 2713 |
| SspMI | CTAG | 8 cut(s) | 6, 276, 363, 846, 897, 1008, 1385, 3192 |
| StuI | AGGCCT | 1 cut(s) | 168 |
| StyI | CCWWGG | 3 cut(s) | 399, 1704, 2682 |
| TaiI | ACGT | 3 cut(s) | 1794, 2534, 3236 |
| TaqI | TCGA | 6 cut(s) | 24, 261, 2355, 2648, 3236, 3459 |
| TatI | WGTACW | 3 cut(s) | 555, 1012, 2337 |
| TseFI | GTSAC | 3 cut(s) | 721, 1796, 2237 |
| TseI | GCWGC | 7 cut(s) | 269, 974, 1439, 1969, 2479, 2657, 3292 |
| Tsp45I | GTSAC | 3 cut(s) | 721, 1796, 2237 |
| TspGWI | ACGGA | 1 cut(s) | 1757 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 911 |
| Vha464I | CTTAAG | 1 cut(s) | 2620 |
| VpaK11BI | GGWCC | 3 cut(s) | 1625, 2626, 3476 |
| VspI | ATTAAT | 1 cut(s) | 2382 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2775 |
| XceI | RCATGY | 4 cut(s) | 1826, 1838, 3280, 3566 |
| XhoI | CTCGAG | 1 cut(s) | 2354 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1362, 2301 |
| XspI | CTAG | 8 cut(s) | 6, 276, 363, 846, 897, 1008, 1385, 3192 |
| ZraI | GACGTC | 1 cut(s) | 2532 |
| Zsp2I | ATGCAT | 1 cut(s) | 3282 |