Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003922

Physical Location & Seq

Genomic Coordinates Forward (+)

22485335 .. 22496023

Gene Structure 10689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATTTTATTGTGGTTGGTGTCGCAAGACCTGATTTCGAGCATTTAAGGAGGCTTCAAAAGAGGACCGGTGGCAGATCGTGCTTAGCCTCGGTCAATTGTTTGCAGGTTTTCAGCGGCGGGGATGGGCTGCACTTAAAAGCGATATCAGCAAAGGCAACTACGGCTTCCGCAAGATTTTCCGGCGACTTTCCCTGCAAATTTTTGACACTTTTTGAGAAAGCCGAAACTCATTCCTCCAATAGCTTGAAATCATACGGTCTACATGAAGTAGCATCCTACAATATCCCATATTGGGATGGATCCGTAAATGCAGAGCATTTAGGTGATCCTTTGTGGGAAGAAAGTCCAAATTCAGCCCCATTGACTTTACAAAACCGACTATTGAATCCCTTTCGGGGTTCCGAAACCCATTCTAAGGCACCATCTTCACCTTTTGTTGCGAAGTCCACATTTGGTGTCTCATGTGAGAAAAGACAGCATGATGCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

17.93

Weight (kDa)

8.39

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49490
fragaria_vesca	FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030
malus_domestica	MD01G1229500.v1.1 MD07G1301500.v1.1
prunus_persica	Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1
pyrus_communis	pycom01g23760 pycom07g27420
rosa_chinensis	RchiOBHm_Chr1g0383041
rosa_laevigata	RLG00000026136
rosa_roxburghii	Rroxscaffold_1G00018270 Rroxscaffold_4G00277660
rosa_rugosa	Rorug01G0437900
rosa_samantha	Rh1AG463600 Rh1BG420700 Rh1CG434200 Rh1DG453300 Rh5BG423200
rosa_wichuraiana	Rw1G040860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	262
AciI	CCGC	3 cut(s)	117, 120, 171
AclWI	GGATC	3 cut(s)	297, 310, 323
AcsI	RAATTY	2 cut(s)	200, 352
AfiI	CCNNNNNNNGG	3 cut(s)	295, 398, 418
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	59, 250, 388
AluBI	AGCT	1 cut(s)	246
AluI	AGCT	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	3 cut(s)	297, 310, 323
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	200, 352
AsiGI	ACCGGT	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	338, 423
AvaII	GGWCC	1 cut(s)	66
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	3 cut(s)	119, 293, 433
BceAI	ACGGC	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	118, 131
BlpI	GCTNAGC	1 cut(s)	85
BlsI	GCNGC	2 cut(s)	119, 132
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	3 cut(s)	304, 403, 423
BmsI	GCATC	2 cut(s)	284, 475
Bpu1102I	GCTNAGC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 398, 418
Bse118I	RCCGGY	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	3 cut(s)	130, 275, 304
BseLI	CCNNNNNNNGG	3 cut(s)	295, 398, 418
BseXI	GCAGC	1 cut(s)	117
BsgI	GTGCAG	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	421
BshTI	ACCGGT	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	69, 183
BslI	CCNNNNNNNGG	3 cut(s)	295, 398, 418
BsmAI	GTCTC	1 cut(s)	466
Bsp143I	GATC	3 cut(s)	77, 302, 328
Bsp1720I	GCTNAGC	1 cut(s)	85
BspACI	CCGC	3 cut(s)	117, 120, 171
BspLI	GGNNCC	3 cut(s)	304, 403, 423
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	3 cut(s)	297, 310, 323
BspT107I	GGYRCC	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	3 cut(s)	77, 302, 328
Bst4CI	ACNGT	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	85, 417
BstF5I	GGATG	3 cut(s)	130, 275, 304
BstKTI	GATC	3 cut(s)	80, 305, 331
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	3 cut(s)	77, 302, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 149, 164
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BtsCI	GGATG	3 cut(s)	130, 275, 304
BveI	ACCTGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	66
CspAI	ACCGGT	1 cut(s)	68
CviAII	CATG	3 cut(s)	266, 465, 482
CviJI	RGCY	7 cut(s)	55, 89, 130, 167, 224, 246, 359
CviKI_1	RGCY	7 cut(s)	55, 89, 130, 167, 224, 246, 359
DdeI	CTNAG	2 cut(s)	85, 417
DpnI	GATC	3 cut(s)	79, 304, 330
DpnII	GATC	3 cut(s)	77, 302, 328
Eco32I	GATATC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	66
EcoRV	GATATC	1 cut(s)	147
FaeI	CATG	3 cut(s)	269, 468, 485
FaiI	YATR	5 cut(s)	256, 267, 292, 466, 483
FatI	CATG	3 cut(s)	265, 464, 481
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	118, 131
FokI	GGATG	3 cut(s)	137, 262, 311
Fsp4HI	GCNGC	2 cut(s)	118, 131
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	2 cut(s)	118, 131
HapII	CCGG	2 cut(s)	69, 183
Hin1II	CATG	3 cut(s)	269, 468, 485
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	69, 183
HphI	GGTGA	2 cut(s)	338, 423
Hpy166II	GTNNAC	2 cut(s)	263, 450
Hpy188I	TCNGA	1 cut(s)	406
Hpy8I	GTNNAC	2 cut(s)	263, 450
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	4 cut(s)	106, 133, 198, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 149, 164
HpyF3I	CTNAG	2 cut(s)	85, 417
Hsp92II	CATG	3 cut(s)	269, 468, 485
Kzo9I	GATC	3 cut(s)	77, 302, 328
LpnPI	CCDG	5 cut(s)	45, 82, 92, 196, 208
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	2 cut(s)	284, 475
MaeI	CTAG	1 cut(s)	489
MalI	GATC	3 cut(s)	79, 304, 330
MboI	GATC	3 cut(s)	77, 302, 328
MboII	GAAGA	2 cut(s)	353, 420
MfeI	CAATTG	1 cut(s)	97
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	3 cut(s)	97, 200, 352
MnlI	CCTC	4 cut(s)	45, 57, 100, 247
MseI	TTAA	2 cut(s)	47, 137
MslI	CAYNNNNRTG	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	2 cut(s)	69, 183
MunI	CAATTG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	81, 149, 164
NdeII	GATC	3 cut(s)	77, 302, 328
NlaIII	CATG	3 cut(s)	269, 468, 485
NlaIV	GGNNCC	3 cut(s)	304, 403, 423
PfeI	GAWTC	1 cut(s)	388
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	119, 132
PspN4I	GGNNCC	3 cut(s)	304, 403, 423
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	47, 137
SatI	GCNGC	2 cut(s)	118, 131
Sau3AI	GATC	3 cut(s)	77, 302, 328
Sau96I	GGNCC	1 cut(s)	66
SetI	ASST	5 cut(s)	34, 111, 248, 328, 436
SfaNI	GCATC	2 cut(s)	284, 475
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	3 cut(s)	97, 200, 352
SsiI	CCGC	3 cut(s)	117, 120, 171
SspMI	CTAG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	39
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	3 cut(s)	97, 200, 352
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	2 cut(s)	47, 137
Tru9I	TTAA	2 cut(s)	47, 137
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	282
TspGWI	ACGGA	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	2 cut(s)	200, 352
XmiI	GTMKAC	1 cut(s)	262
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.