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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49490 |
| fragaria_vesca | FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 |
| malus_domestica | MD01G1229500.v1.1 MD07G1301500.v1.1 |
| prunus_persica | Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 |
| pyrus_communis | pycom01g23760 pycom07g27420 |
| rosa_chinensis | RchiOBHm_Chr1g0383041 |
| rosa_laevigata | RLG00000026136 |
| rosa_roxburghii | Rroxscaffold_1G00018270 Rroxscaffold_4G00277660 |
| rosa_rugosa | Rorug01G0437900 |
| rosa_samantha | Rh1AG463600 Rh1BG420700 Rh1CG434200 Rh1DG453300 Rh5BG423200 |
| rosa_wichuraiana | Rw1G040860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 76, 928 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2095 |
| AccBSI | CCGCTC | 1 cut(s) | 97 |
| AccI | GTMKAC | 1 cut(s) | 593 |
| AccII | CGCG | 1 cut(s) | 1881 |
| AccIII | TCCGGA | 1 cut(s) | 1112 |
| AciI | CCGC | 8 cut(s) | 97, 167, 410, 1382, 1881, 1890, 2384, 2908 |
| AcoI | YGGCCR | 4 cut(s) | 3067, 3099, 3286, 3393 |
| AcsI | RAATTY | 9 cut(s) | 190, 857, 1108, 1351, 1420, 1643, 1714, 2575, 3140 |
| AcuI | CTGAAG | 6 cut(s) | 1059, 1536, 1689, 1923, 2658, 2832 |
| AdeI | CACNNNGTG | 1 cut(s) | 1867 |
| AfaI | GTAC | 5 cut(s) | 566, 1637, 2278, 2326, 2615 |
| AflII | CTTAAG | 2 cut(s) | 1571, 2899 |
| AflIII | ACRYGT | 1 cut(s) | 3718 |
| AjiI | CACGTC | 1 cut(s) | 2156 |
| AjnI | CCWGG | 4 cut(s) | 1339, 1483, 2841, 3039 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1206, 1238 |
| Alw21I | GWGCWC | 3 cut(s) | 2046, 3179, 3281 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2095 |
| Ama87I | CYCGRG | 1 cut(s) | 3417 |
| Aor13HI | TCCGGA | 1 cut(s) | 1112 |
| ApeKI | GCWGC | 6 cut(s) | 179, 1124, 1554, 2033, 2128, 2214 |
| ApoI | RAATTY | 9 cut(s) | 190, 857, 1108, 1351, 1420, 1643, 1714, 2575, 3140 |
| AseI | ATTAAT | 1 cut(s) | 1806 |
| AspA2I | CCTAGG | 2 cut(s) | 1228, 3026 |
| AspS9I | GGNCC | 6 cut(s) | 32, 237, 576, 623, 674, 1318 |
| AsuC2I | CCSGG | 1 cut(s) | 3125 |
| AsuII | TTCGAA | 1 cut(s) | 1022 |
| AvaI | CYCGRG | 1 cut(s) | 3417 |
| AvaII | GGWCC | 4 cut(s) | 32, 237, 623, 1318 |
| AvrII | CCTAGG | 2 cut(s) | 1228, 3026 |
| AxyI | CCTNAGG | 1 cut(s) | 3500 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 675, 708 |
| BalI | TGGCCA | 2 cut(s) | 3101, 3395 |
| BamHI | GGATCC | 3 cut(s) | 893, 1438, 2419 |
| BanI | GGYRCC | 2 cut(s) | 76, 928 |
| BanII | GRGCYC | 3 cut(s) | 125, 2046, 3179 |
| BbsI | GAAGAC | 3 cut(s) | 1020, 1194, 1760 |
| Bbv12I | GWGCWC | 3 cut(s) | 2046, 3179, 3281 |
| BbvCI | CCTCAGC | 1 cut(s) | 3204 |
| BbvI | GCAGC | 6 cut(s) | 166, 1136, 1541, 2020, 2115, 2201 |
| BceAI | ACGGC | 1 cut(s) | 590 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1859, 1893 |
| BciT130I | CCWGG | 4 cut(s) | 1341, 1485, 2843, 3041 |
| BciVI | GTATCC | 2 cut(s) | 2584, 3160 |
| BclI | TGATCA | 2 cut(s) | 391, 496 |
| BcnI | CCSGG | 1 cut(s) | 3125 |
| BfaI | CTAG | 8 cut(s) | 417, 504, 996, 1229, 1547, 2409, 3015, 3027 |
| BfmI | CTRYAG | 6 cut(s) | 295, 1059, 2022, 2037, 3430, 3444 |
| BfrI | CTTAAG | 2 cut(s) | 1571, 2899 |
| BfuI | GTATCC | 2 cut(s) | 2584, 3160 |
| BglII | AGATCT | 1 cut(s) | 2173 |
| BlnI | CCTAGG | 2 cut(s) | 1228, 3026 |
| BmcAI | AGTACT | 2 cut(s) | 2278, 2326 |
| Bme1390I | CCNGG | 5 cut(s) | 1341, 1485, 2843, 3041, 3125 |
| Bme18I | GGWCC | 4 cut(s) | 32, 237, 623, 1318 |
| BmeT110I | CYCGRG | 1 cut(s) | 3417 |
| BmgBI | CACGTC | 1 cut(s) | 2156 |
| BmgT120I | GGNCC | 6 cut(s) | 32, 237, 576, 623, 674, 1318 |
| BmrFI | CCNGG | 5 cut(s) | 1341, 1485, 2843, 3041, 3125 |
| BmrI | ACTGGG | 2 cut(s) | 222, 2786 |
| BmuI | ACTGGG | 2 cut(s) | 222, 2786 |
| BpiI | GAAGAC | 3 cut(s) | 1020, 1194, 1760 |
| BpmI | CTGGAG | 3 cut(s) | 1181, 2300, 2825 |
| Bpu10I | CCTNAGC | 2 cut(s) | 108, 3204 |
| Bpu14I | TTCGAA | 1 cut(s) | 1022 |
| BpuEI | CTTGAG | 4 cut(s) | 1825, 2267, 2453, 2944 |
| BpuMI | CCSGG | 1 cut(s) | 3125 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3035 |
| BsaI | GGTCTC | 3 cut(s) | 128, 3114, 3190 |
| BsaJI | CCNNGG | 6 cut(s) | 540, 1228, 1314, 1962, 3026, 3180 |
| BsaWI | WCCGGW | 1 cut(s) | 1112 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1915, 1945, 2298, 2328 |
| Bse118I | RCCGGY | 5 cut(s) | 313, 1054, 1627, 3284, 3680 |
| Bse1I | ACTGG | 5 cut(s) | 132, 212, 228, 1164, 2792 |
| Bse21I | CCTNAGG | 1 cut(s) | 3500 |
| Bse3DI | GCAATG | 1 cut(s) | 1564 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3035 |
| BseAI | TCCGGA | 1 cut(s) | 1112 |
| BseBI | CCWGG | 4 cut(s) | 1341, 1485, 2843, 3041 |
| BseDI | CCNNGG | 6 cut(s) | 540, 1228, 1314, 1962, 3026, 3180 |
| BseJI | GATNNNNATC | 1 cut(s) | 3035 |
| BseMI | GCAATG | 1 cut(s) | 1564 |
| BseMII | CTCAG | 9 cut(s) | 153, 614, 1419, 2561, 2577, 2581, 2615, 2760, 3195 |
| BseNI | ACTGG | 5 cut(s) | 132, 212, 228, 1164, 2792 |
| BseRI | GAGGAG | 1 cut(s) | 3746 |
| BseXI | GCAGC | 6 cut(s) | 166, 1136, 1541, 2020, 2115, 2201 |
| BseYI | CCCAGC | 2 cut(s) | 1654, 3641 |
| BsgI | GTGCAG | 1 cut(s) | 1953 |
| Bsh1236I | CGCG | 1 cut(s) | 1881 |
| BshNI | GGYRCC | 2 cut(s) | 76, 928 |
| BsiHKAI | GWGCWC | 3 cut(s) | 2046, 3179, 3281 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3417 |
| BsiSI | CCGG | 8 cut(s) | 314, 1055, 1113, 1628, 3070, 3124, 3285, 3681 |
| BslFI | GGGAC | 2 cut(s) | 28, 666 |
| BsmBI | CGTCTC | 1 cut(s) | 558 |
| BsmFI | GGGAC | 2 cut(s) | 28, 666 |
| BsmI | GAATGC | 3 cut(s) | 1855, 2412, 2938 |
| Bso31I | GGTCTC | 3 cut(s) | 128, 3114, 3190 |
| BsoBI | CYCGRG | 1 cut(s) | 3417 |
| Bsp119I | TTCGAA | 1 cut(s) | 1022 |
| Bsp1286I | GDGCHC | 4 cut(s) | 125, 2046, 3179, 3281 |
| Bsp13I | TCCGGA | 1 cut(s) | 1112 |
| Bsp1407I | TGTACA | 1 cut(s) | 2613 |
| BspACI | CCGC | 8 cut(s) | 97, 167, 410, 1382, 1881, 1890, 2384, 2908 |
| BspCNI | CTCAG | 9 cut(s) | 154, 613, 1420, 2560, 2578, 2580, 2614, 2761, 3196 |
| BspEI | TCCGGA | 1 cut(s) | 1112 |
| BspFNI | CGCG | 1 cut(s) | 1881 |
| BspHI | TCATGA | 2 cut(s) | 3190, 3723 |
| BspQI | GCTCTTC | 1 cut(s) | 2289 |
| BspT104I | TTCGAA | 1 cut(s) | 1022 |
| BspT107I | GGYRCC | 2 cut(s) | 76, 928 |
| BspTI | CTTAAG | 2 cut(s) | 1571, 2899 |
| BspTNI | GGTCTC | 3 cut(s) | 128, 3114, 3190 |
| BsrBI | CCGCTC | 1 cut(s) | 97 |
| BsrDI | GCAATG | 1 cut(s) | 1564 |
| BsrFI | RCCGGY | 5 cut(s) | 313, 1054, 1627, 3284, 3680 |
| BsrGI | TGTACA | 1 cut(s) | 2613 |
| BsrI | ACTGG | 5 cut(s) | 132, 212, 228, 1164, 2792 |
| BssAI | RCCGGY | 5 cut(s) | 313, 1054, 1627, 3284, 3680 |
| BssECI | CCNNGG | 6 cut(s) | 540, 1228, 1314, 1962, 3026, 3180 |
| BssNAI | GTATAC | 1 cut(s) | 594 |
| BssT1I | CCWWGG | 6 cut(s) | 540, 1228, 1314, 1962, 3026, 3180 |
| Bst1107I | GTATAC | 1 cut(s) | 594 |
| Bst2UI | CCWGG | 4 cut(s) | 1341, 1485, 2843, 3041 |
| Bst4CI | ACNGT | 9 cut(s) | 91, 438, 761, 1867, 2150, 3172, 3431, 3448, 3752 |
| Bst6I | CTCTTC | 6 cut(s) | 586, 1111, 1512, 2289, 2337, 3706 |
| BstAFI | CTTAAG | 2 cut(s) | 1571, 2899 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1130, 1718, 3005 |
| BstAUI | TGTACA | 1 cut(s) | 2613 |
| BstBI | TTCGAA | 1 cut(s) | 1022 |
| BstC8I | GCNNGC | 6 cut(s) | 307, 311, 315, 2354, 3580, 3663 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1818, 3222 |
| BstFNI | CGCG | 1 cut(s) | 1881 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 208, 1130, 1560, 1718, 1887, 3005, 3066, 3285 |
| BstNI | CCWGG | 4 cut(s) | 1341, 1485, 2843, 3041 |
| BstNSI | RCATGY | 2 cut(s) | 3442, 3722 |
| BstSCI | CCNGG | 5 cut(s) | 1339, 1483, 2841, 3039, 3123 |
| BstSFI | CTRYAG | 6 cut(s) | 295, 1059, 2022, 2037, 3430, 3444 |
| BstUI | CGCG | 1 cut(s) | 1881 |
| BstV1I | GCAGC | 6 cut(s) | 166, 1136, 1541, 2020, 2115, 2201 |
| BstV2I | GAAGAC | 3 cut(s) | 1020, 1194, 1760 |
| BstX2I | RGATCY | 6 cut(s) | 803, 893, 1438, 2173, 2419, 3030 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 633, 1646 |
| BstYI | RGATCY | 6 cut(s) | 803, 893, 1438, 2173, 2419, 3030 |
| BstZ17I | GTATAC | 1 cut(s) | 594 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3500 |
| BsuI | GTATCC | 2 cut(s) | 2584, 3160 |
| BtrI | CACGTC | 1 cut(s) | 2156 |
| BtsI | GCAGTG | 1 cut(s) | 2739 |
| Cac8I | GCNNGC | 6 cut(s) | 307, 311, 315, 2354, 3580, 3663 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2095 |
| CciI | TCATGA | 2 cut(s) | 3190, 3723 |
| Cfr10I | RCCGGY | 5 cut(s) | 313, 1054, 1627, 3284, 3680 |
| Cfr13I | GGNCC | 6 cut(s) | 32, 237, 576, 623, 674, 1318 |
| CseI | GACGC | 1 cut(s) | 2764 |
| Csp6I | GTAC | 5 cut(s) | 565, 1636, 2277, 2325, 2614 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1674, 1709 |
| CviQI | GTAC | 5 cut(s) | 565, 1636, 2277, 2325, 2614 |
| DraI | TTTAAA | 2 cut(s) | 1330, 2836 |
| DraIII | CACNNNGTG | 1 cut(s) | 1867 |
| EaeI | YGGCCR | 4 cut(s) | 3067, 3099, 3286, 3393 |
| Eam1104I | CTCTTC | 6 cut(s) | 586, 1111, 1512, 2289, 2337, 3706 |
| EarI | CTCTTC | 6 cut(s) | 586, 1111, 1512, 2289, 2337, 3706 |
| EciI | GGCGGA | 1 cut(s) | 1905 |
| Ecl136II | GAGCTC | 2 cut(s) | 2044, 3177 |
| Eco130I | CCWWGG | 6 cut(s) | 540, 1228, 1314, 1962, 3026, 3180 |
| Eco147I | AGGCCT | 2 cut(s) | 3505, 3661 |
| Eco24I | GRGCYC | 3 cut(s) | 125, 2046, 3179 |
| Eco31I | GGTCTC | 3 cut(s) | 128, 3114, 3190 |
| Eco32I | GATATC | 1 cut(s) | 1009 |
| Eco47I | GGWCC | 4 cut(s) | 32, 237, 623, 1318 |
| Eco53kI | GAGCTC | 2 cut(s) | 2044, 3177 |
| Eco57I | CTGAAG | 6 cut(s) | 1059, 1536, 1689, 1923, 2658, 2832 |
| Eco81I | CCTNAGG | 1 cut(s) | 3500 |
| Eco88I | CYCGRG | 1 cut(s) | 3417 |
| EcoICRI | GAGCTC | 2 cut(s) | 2044, 3177 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1818, 3222 |
| EcoO109I | RGGNCCY | 1 cut(s) | 32 |
| EcoRI | GAATTC | 3 cut(s) | 190, 1108, 1420 |
| EcoRII | CCWGG | 4 cut(s) | 1339, 1483, 2841, 3039 |
| EcoRV | GATATC | 1 cut(s) | 1009 |
| EcoT14I | CCWWGG | 6 cut(s) | 540, 1228, 1314, 1962, 3026, 3180 |
| EcoT22I | ATGCAT | 2 cut(s) | 382, 3370 |
| EcoT38I | GRGCYC | 3 cut(s) | 125, 2046, 3179 |
| ErhI | CCWWGG | 6 cut(s) | 540, 1228, 1314, 1962, 3026, 3180 |
| Esp3I | CGTCTC | 1 cut(s) | 558 |
| FaqI | GGGAC | 2 cut(s) | 28, 666 |
| FbaI | TGATCA | 2 cut(s) | 391, 496 |
| FblI | GTMKAC | 1 cut(s) | 593 |
| FriOI | GRGCYC | 3 cut(s) | 125, 2046, 3179 |
| FspBI | CTAG | 8 cut(s) | 417, 504, 996, 1229, 1547, 2409, 3015, 3027 |
| GsaI | CCCAGC | 2 cut(s) | 1658, 3645 |
| GsuI | CTGGAG | 3 cut(s) | 1181, 2300, 2825 |
| HapII | CCGG | 8 cut(s) | 314, 1055, 1113, 1628, 3070, 3124, 3285, 3681 |
| HgaI | GACGC | 1 cut(s) | 2764 |
| HincII | GTYRAC | 5 cut(s) | 322, 2247, 2391, 2805, 2989 |
| HindII | GTYRAC | 5 cut(s) | 322, 2247, 2391, 2805, 2989 |
| HpaII | CCGG | 8 cut(s) | 314, 1055, 1113, 1628, 3070, 3124, 3285, 3681 |
| HpyCH4III | ACNGT | 9 cut(s) | 91, 438, 761, 1867, 2150, 3172, 3431, 3448, 3752 |
| HpyCH4IV | ACGT | 2 cut(s) | 2155, 2333 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 208, 1130, 1560, 1718, 1887, 3005, 3066, 3285 |
| HpySE526I | ACGT | 2 cut(s) | 2155, 2333 |
| Kpn2I | TCCGGA | 1 cut(s) | 1112 |
| KroI | GCCGGC | 1 cut(s) | 313 |
| KroNI | GCCGGC | 1 cut(s) | 315 |
| Ksp22I | TGATCA | 2 cut(s) | 391, 496 |
| LguI | GCTCTTC | 1 cut(s) | 2289 |
| LmnI | GCTCC | 7 cut(s) | 216, 496, 541, 637, 2410, 3182, 3678 |
| Lsp1109I | GCAGC | 6 cut(s) | 166, 1136, 1541, 2020, 2115, 2201 |
| MaeI | CTAG | 8 cut(s) | 417, 504, 996, 1229, 1547, 2409, 3015, 3027 |
| MaeII | ACGT | 2 cut(s) | 2155, 2333 |
| MbiI | CCGCTC | 1 cut(s) | 97 |
| MflI | RGATCY | 6 cut(s) | 803, 893, 1438, 2173, 2419, 3030 |
| MhlI | GDGCHC | 4 cut(s) | 125, 2046, 3179, 3281 |
| MlsI | TGGCCA | 2 cut(s) | 3101, 3395 |
| MluNI | TGGCCA | 2 cut(s) | 3101, 3395 |
| MmeI | TCCRAC | 2 cut(s) | 980, 1451 |
| Mox20I | TGGCCA | 2 cut(s) | 3101, 3395 |
| Mph1103I | ATGCAT | 2 cut(s) | 382, 3370 |
| MroI | TCCGGA | 1 cut(s) | 1112 |
| MroNI | GCCGGC | 1 cut(s) | 313 |
| MscI | TGGCCA | 2 cut(s) | 3101, 3395 |
| MslI | CAYNNNNRTG | 1 cut(s) | 825 |
| Msp20I | TGGCCA | 2 cut(s) | 3101, 3395 |
| MspA1I | CMGCKG | 1 cut(s) | 1454 |
| MspCI | CTTAAG | 2 cut(s) | 1571, 2899 |
| MspI | CCGG | 8 cut(s) | 314, 1055, 1113, 1628, 3070, 3124, 3285, 3681 |
| MspR9I | CCNGG | 5 cut(s) | 1341, 1485, 2843, 3041, 3125 |
| MssI | GTTTAAAC | 1 cut(s) | 2836 |
| Mva1269I | GAATGC | 3 cut(s) | 1855, 2412, 2938 |
| MvaI | CCWGG | 4 cut(s) | 1341, 1485, 2843, 3041 |
| MvnI | CGCG | 1 cut(s) | 1881 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 208, 1130, 1560, 1718, 1887, 3005, 3066, 3285 |
| NaeI | GCCGGC | 1 cut(s) | 315 |
| NciI | CCSGG | 1 cut(s) | 3125 |
| NgoMIV | GCCGGC | 1 cut(s) | 313 |
| NmuCI | GTSAC | 6 cut(s) | 157, 1590, 2513, 3434, 3569, 3601 |
| NsiI | ATGCAT | 2 cut(s) | 382, 3370 |
| NspI | RCATGY | 2 cut(s) | 3442, 3722 |
| NspV | TTCGAA | 1 cut(s) | 1022 |
| PagI | TCATGA | 2 cut(s) | 3190, 3723 |
| PceI | AGGCCT | 2 cut(s) | 3505, 3661 |
| PciI | ACATGT | 1 cut(s) | 3718 |
| PciSI | GCTCTTC | 1 cut(s) | 2289 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2677 |
| PctI | GAATGC | 3 cut(s) | 1855, 2412, 2938 |
| PdiI | GCCGGC | 1 cut(s) | 315 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2095 |
| PfoI | TCCNGGA | 2 cut(s) | 2841, 3039 |
| PmeI | GTTTAAAC | 1 cut(s) | 2836 |
| PpuMI | RGGWCCY | 1 cut(s) | 32 |
| PscI | ACATGT | 1 cut(s) | 3718 |
| PshBI | ATTAAT | 1 cut(s) | 1806 |
| Psp124BI | GAGCTC | 2 cut(s) | 2046, 3179 |
| Psp5II | RGGWCCY | 1 cut(s) | 32 |
| Psp6I | CCWGG | 4 cut(s) | 1339, 1483, 2841, 3039 |
| PspFI | CCCAGC | 2 cut(s) | 1654, 3641 |
| PspGI | CCWGG | 4 cut(s) | 1339, 1483, 2841, 3039 |
| PspPI | GGNCC | 6 cut(s) | 32, 237, 576, 623, 674, 1318 |
| PspPPI | RGGWCCY | 1 cut(s) | 32 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2095 |
| PsuI | RGATCY | 6 cut(s) | 803, 893, 1438, 2173, 2419, 3030 |
| PvuII | CAGCTG | 1 cut(s) | 1454 |
| RsaI | GTAC | 5 cut(s) | 566, 1637, 2278, 2326, 2615 |
| RsaNI | GTAC | 5 cut(s) | 565, 1636, 2277, 2325, 2614 |
| RseI | CAYNNNNRTG | 1 cut(s) | 825 |
| SacI | GAGCTC | 2 cut(s) | 2046, 3179 |
| SapI | GCTCTTC | 1 cut(s) | 2289 |
| Sau96I | GGNCC | 6 cut(s) | 32, 237, 576, 623, 674, 1318 |
| ScaI | AGTACT | 2 cut(s) | 2278, 2326 |
| ScrFI | CCNGG | 5 cut(s) | 1341, 1485, 2843, 3041, 3125 |
| SduI | GDGCHC | 4 cut(s) | 125, 2046, 3179, 3281 |
| SfcI | CTRYAG | 6 cut(s) | 295, 1059, 2022, 2037, 3430, 3444 |
| SfuI | TTCGAA | 1 cut(s) | 1022 |
| SinI | GGWCC | 4 cut(s) | 32, 237, 623, 1318 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 825 |
| SmlI | CTYRAG | 6 cut(s) | 1571, 1840, 2282, 2432, 2899, 2959 |
| SmoI | CTYRAG | 6 cut(s) | 1571, 1840, 2282, 2432, 2899, 2959 |
| SseBI | AGGCCT | 2 cut(s) | 3505, 3661 |
| SsiI | CCGC | 8 cut(s) | 97, 167, 410, 1382, 1881, 1890, 2384, 2908 |
| SspI | AATATT | 2 cut(s) | 2400, 3331 |
| SspMI | CTAG | 8 cut(s) | 417, 504, 996, 1229, 1547, 2409, 3015, 3027 |
| SstI | GAGCTC | 2 cut(s) | 2046, 3179 |
| StuI | AGGCCT | 2 cut(s) | 3505, 3661 |
| StyD4I | CCNGG | 5 cut(s) | 1339, 1483, 2841, 3039, 3123 |
| StyI | CCWWGG | 6 cut(s) | 540, 1228, 1314, 1962, 3026, 3180 |
| TaaI | ACNGT | 9 cut(s) | 91, 438, 761, 1867, 2150, 3172, 3431, 3448, 3752 |
| TaiI | ACGT | 2 cut(s) | 2158, 2336 |
| TatI | WGTACW | 4 cut(s) | 564, 2276, 2324, 2613 |
| TauI | GCSGC | 5 cut(s) | 100, 169, 413, 1385, 2386 |
| TseFI | GTSAC | 6 cut(s) | 157, 1590, 2513, 3434, 3569, 3601 |
| TseI | GCWGC | 6 cut(s) | 179, 1124, 1554, 2033, 2128, 2214 |
| Tsp45I | GTSAC | 6 cut(s) | 157, 1590, 2513, 3434, 3569, 3601 |
| TspGWI | ACGGA | 2 cut(s) | 3376, 3608 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2095 |
| Vha464I | CTTAAG | 2 cut(s) | 1571, 2899 |
| VpaK11BI | GGWCC | 4 cut(s) | 32, 237, 623, 1318 |
| VspI | ATTAAT | 1 cut(s) | 1806 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1818, 3222 |
| XapI | RAATTY | 9 cut(s) | 190, 857, 1108, 1351, 1420, 1643, 1714, 2575, 3140 |
| XceI | RCATGY | 2 cut(s) | 3442, 3722 |
| XmaJI | CCTAGG | 2 cut(s) | 1228, 3026 |
| XmiI | GTMKAC | 1 cut(s) | 593 |
| XspI | CTAG | 8 cut(s) | 417, 504, 996, 1229, 1547, 2409, 3015, 3027 |
| ZrmI | AGTACT | 2 cut(s) | 2278, 2326 |
| Zsp2I | ATGCAT | 2 cut(s) | 382, 3370 |