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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49490 |
| fragaria_vesca | FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 FvH4_7g33030 |
| malus_domestica | MD01G1229500.v1.1 MD07G1301500.v1.1 |
| prunus_persica | Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 Prupe.2G320100_v2.0.a1 |
| pyrus_communis | pycom01g23760 pycom07g27420 |
| rosa_chinensis | RchiOBHm_Chr1g0383041 |
| rosa_laevigata | RLG00000026136 |
| rosa_roxburghii | Rroxscaffold_1G00018270 Rroxscaffold_4G00277660 |
| rosa_rugosa | Rorug01G0437900 |
| rosa_samantha | Rh1AG463600 Rh1BG420700 Rh1CG434200 Rh1DG453300 Rh5BG423200 |
| rosa_wichuraiana | Rw1G040860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 76, 925, 1021 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2188 |
| AccBSI | CCGCTC | 1 cut(s) | 97 |
| AccI | GTMKAC | 2 cut(s) | 590, 3081 |
| AccII | CGCG | 1 cut(s) | 1974 |
| AccIII | TCCGGA | 1 cut(s) | 1205 |
| AciI | CCGC | 9 cut(s) | 97, 177, 407, 1475, 1974, 1983, 2477, 3001, 3773 |
| AcoI | YGGCCR | 3 cut(s) | 3192, 3379, 3486 |
| AcsI | RAATTY | 9 cut(s) | 187, 854, 1201, 1444, 1513, 1736, 1807, 2668, 3233 |
| AcuI | CTGAAG | 5 cut(s) | 1152, 1629, 2016, 2751, 2925 |
| AdeI | CACNNNGTG | 1 cut(s) | 1960 |
| AfaI | GTAC | 6 cut(s) | 331, 563, 1730, 2371, 2419, 2708 |
| AflII | CTTAAG | 2 cut(s) | 1664, 2992 |
| AflIII | ACRYGT | 1 cut(s) | 3811 |
| AjiI | CACGTC | 1 cut(s) | 2249 |
| AjnI | CCWGG | 4 cut(s) | 1432, 1576, 2934, 3132 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1299, 1331 |
| Alw21I | GWGCWC | 2 cut(s) | 3272, 3374 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2188 |
| Ama87I | CYCGRG | 1 cut(s) | 3510 |
| Aor13HI | TCCGGA | 1 cut(s) | 1205 |
| ApeKI | GCWGC | 4 cut(s) | 1217, 2126, 2221, 2307 |
| ApoI | RAATTY | 9 cut(s) | 187, 854, 1201, 1444, 1513, 1736, 1807, 2668, 3233 |
| AseI | ATTAAT | 1 cut(s) | 1899 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 752 |
| AspA2I | CCTAGG | 2 cut(s) | 1321, 3119 |
| AspS9I | GGNCC | 6 cut(s) | 32, 234, 573, 620, 671, 1411 |
| AsuC2I | CCSGG | 1 cut(s) | 3218 |
| AsuII | TTCGAA | 1 cut(s) | 1115 |
| AvaI | CYCGRG | 1 cut(s) | 3510 |
| AvaII | GGWCC | 4 cut(s) | 32, 234, 620, 1411 |
| AvrII | CCTAGG | 2 cut(s) | 1321, 3119 |
| AxyI | CCTNAGG | 1 cut(s) | 3593 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 672, 705 |
| BalI | TGGCCA | 2 cut(s) | 3194, 3488 |
| BamHI | GGATCC | 4 cut(s) | 890, 986, 1531, 2512 |
| BanI | GGYRCC | 3 cut(s) | 76, 925, 1021 |
| BanII | GRGCYC | 1 cut(s) | 3272 |
| BbsI | GAAGAC | 3 cut(s) | 1113, 1287, 1853 |
| Bbv12I | GWGCWC | 2 cut(s) | 3272, 3374 |
| BbvCI | CCTCAGC | 1 cut(s) | 3297 |
| BbvI | GCAGC | 4 cut(s) | 1229, 2113, 2208, 2294 |
| BceAI | ACGGC | 2 cut(s) | 587, 2072 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1952, 1986, 3071, 3105 |
| BciT130I | CCWGG | 4 cut(s) | 1434, 1578, 2936, 3134 |
| BciVI | GTATCC | 2 cut(s) | 2677, 3253 |
| BclI | TGATCA | 2 cut(s) | 388, 493 |
| BcnI | CCSGG | 1 cut(s) | 3218 |
| BfaI | CTAG | 9 cut(s) | 120, 414, 501, 1089, 1322, 1640, 2502, 3108, 3120 |
| BfmI | CTRYAG | 5 cut(s) | 292, 1152, 2115, 3523, 3537 |
| BfrI | CTTAAG | 2 cut(s) | 1664, 2992 |
| BfuI | GTATCC | 2 cut(s) | 2677, 3253 |
| BglII | AGATCT | 1 cut(s) | 2266 |
| BisI | GCNGC | 8 cut(s) | 98, 408, 1218, 1476, 2127, 2222, 2308, 2477 |
| BlnI | CCTAGG | 2 cut(s) | 1321, 3119 |
| BlsI | GCNGC | 8 cut(s) | 99, 409, 1219, 1477, 2128, 2223, 2309, 2478 |
| BmcAI | AGTACT | 2 cut(s) | 2371, 2419 |
| Bme1390I | CCNGG | 5 cut(s) | 1434, 1578, 2936, 3134, 3218 |
| Bme18I | GGWCC | 4 cut(s) | 32, 234, 620, 1411 |
| BmeT110I | CYCGRG | 1 cut(s) | 3510 |
| BmgBI | CACGTC | 1 cut(s) | 2249 |
| BmgT120I | GGNCC | 6 cut(s) | 32, 234, 573, 620, 671, 1411 |
| BmrFI | CCNGG | 5 cut(s) | 1434, 1578, 2936, 3134, 3218 |
| BmrI | ACTGGG | 2 cut(s) | 219, 2879 |
| BmuI | ACTGGG | 2 cut(s) | 219, 2879 |
| BpiI | GAAGAC | 3 cut(s) | 1113, 1287, 1853 |
| BpmI | CTGGAG | 3 cut(s) | 1274, 2393, 2918 |
| Bpu10I | CCTNAGC | 2 cut(s) | 108, 3297 |
| Bpu14I | TTCGAA | 1 cut(s) | 1115 |
| BpuEI | CTTGAG | 4 cut(s) | 1918, 2360, 2546, 3037 |
| BpuMI | CCSGG | 1 cut(s) | 3218 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3128 |
| BsaI | GGTCTC | 3 cut(s) | 128, 3207, 3283 |
| BsaJI | CCNNGG | 7 cut(s) | 537, 1017, 1321, 1407, 2055, 3119, 3273 |
| BsaWI | WCCGGW | 1 cut(s) | 1205 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2008, 2038, 2391, 2421 |
| Bse118I | RCCGGY | 4 cut(s) | 310, 1147, 1720, 3377 |
| Bse1I | ACTGG | 5 cut(s) | 132, 209, 225, 1257, 2885 |
| Bse21I | CCTNAGG | 1 cut(s) | 3593 |
| Bse3DI | GCAATG | 1 cut(s) | 1657 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3128 |
| BseAI | TCCGGA | 1 cut(s) | 1205 |
| BseBI | CCWGG | 4 cut(s) | 1434, 1578, 2936, 3134 |
| BseDI | CCNNGG | 7 cut(s) | 537, 1017, 1321, 1407, 2055, 3119, 3273 |
| BseJI | GATNNNNATC | 1 cut(s) | 3128 |
| BseMI | GCAATG | 1 cut(s) | 1657 |
| BseMII | CTCAG | 9 cut(s) | 153, 611, 1512, 2654, 2670, 2674, 2708, 2853, 3288 |
| BseNI | ACTGG | 5 cut(s) | 132, 209, 225, 1257, 2885 |
| BseRI | GAGGAG | 1 cut(s) | 3839 |
| BseXI | GCAGC | 4 cut(s) | 1229, 2113, 2208, 2294 |
| BseYI | CCCAGC | 2 cut(s) | 1747, 3734 |
| BsgI | GTGCAG | 1 cut(s) | 2046 |
| Bsh1236I | CGCG | 1 cut(s) | 1974 |
| BshNI | GGYRCC | 3 cut(s) | 76, 925, 1021 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3272, 3374 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3510 |
| BsiSI | CCGG | 6 cut(s) | 311, 1148, 1206, 1721, 3217, 3378 |
| BslFI | GGGAC | 2 cut(s) | 28, 663 |
| BsmBI | CGTCTC | 1 cut(s) | 555 |
| BsmFI | GGGAC | 2 cut(s) | 28, 663 |
| BsmI | GAATGC | 3 cut(s) | 1948, 2505, 3348 |
| Bso31I | GGTCTC | 3 cut(s) | 128, 3207, 3283 |
| BsoBI | CYCGRG | 1 cut(s) | 3510 |
| Bsp119I | TTCGAA | 1 cut(s) | 1115 |
| Bsp1286I | GDGCHC | 2 cut(s) | 3272, 3374 |
| Bsp13I | TCCGGA | 1 cut(s) | 1205 |
| Bsp1407I | TGTACA | 1 cut(s) | 2706 |
| BspACI | CCGC | 9 cut(s) | 97, 177, 407, 1475, 1974, 1983, 2477, 3001, 3773 |
| BspCNI | CTCAG | 9 cut(s) | 154, 610, 1513, 2653, 2671, 2673, 2707, 2854, 3289 |
| BspEI | TCCGGA | 1 cut(s) | 1205 |
| BspFNI | CGCG | 1 cut(s) | 1974 |
| BspHI | TCATGA | 2 cut(s) | 3283, 3816 |
| BspQI | GCTCTTC | 1 cut(s) | 2382 |
| BspT104I | TTCGAA | 1 cut(s) | 1115 |
| BspT107I | GGYRCC | 3 cut(s) | 76, 925, 1021 |
| BspTI | CTTAAG | 2 cut(s) | 1664, 2992 |
| BspTNI | GGTCTC | 3 cut(s) | 128, 3207, 3283 |
| BsrBI | CCGCTC | 1 cut(s) | 97 |
| BsrDI | GCAATG | 1 cut(s) | 1657 |
| BsrFI | RCCGGY | 4 cut(s) | 310, 1147, 1720, 3377 |
| BsrGI | TGTACA | 1 cut(s) | 2706 |
| BsrI | ACTGG | 5 cut(s) | 132, 209, 225, 1257, 2885 |
| BssAI | RCCGGY | 4 cut(s) | 310, 1147, 1720, 3377 |
| BssECI | CCNNGG | 7 cut(s) | 537, 1017, 1321, 1407, 2055, 3119, 3273 |
| BssNAI | GTATAC | 1 cut(s) | 591 |
| BssT1I | CCWWGG | 7 cut(s) | 537, 1017, 1321, 1407, 2055, 3119, 3273 |
| Bst1107I | GTATAC | 1 cut(s) | 591 |
| Bst2UI | CCWGG | 4 cut(s) | 1434, 1578, 2936, 3134 |
| Bst4CI | ACNGT | 9 cut(s) | 91, 355, 435, 1960, 2243, 3265, 3524, 3541, 3845 |
| Bst6I | CTCTTC | 6 cut(s) | 583, 1204, 1605, 2382, 2430, 3799 |
| BstAFI | CTTAAG | 2 cut(s) | 1664, 2992 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1223, 1811, 3098 |
| BstAUI | TGTACA | 1 cut(s) | 2706 |
| BstBI | TTCGAA | 1 cut(s) | 1115 |
| BstC8I | GCNNGC | 5 cut(s) | 304, 308, 312, 2447, 3756 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1911 |
| BstFNI | CGCG | 1 cut(s) | 1974 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 205, 1223, 1811, 1980, 3098, 3159, 3378 |
| BstNI | CCWGG | 4 cut(s) | 1434, 1578, 2936, 3134 |
| BstNSI | RCATGY | 2 cut(s) | 3535, 3815 |
| BstSCI | CCNGG | 5 cut(s) | 1432, 1576, 2934, 3132, 3216 |
| BstSFI | CTRYAG | 5 cut(s) | 292, 1152, 2115, 3523, 3537 |
| BstUI | CGCG | 1 cut(s) | 1974 |
| BstV1I | GCAGC | 4 cut(s) | 1229, 2113, 2208, 2294 |
| BstV2I | GAAGAC | 3 cut(s) | 1113, 1287, 1853 |
| BstX2I | RGATCY | 7 cut(s) | 800, 890, 986, 1531, 2266, 2512, 3123 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 630, 1739 |
| BstYI | RGATCY | 7 cut(s) | 800, 890, 986, 1531, 2266, 2512, 3123 |
| BstZ17I | GTATAC | 1 cut(s) | 591 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3593 |
| BsuI | GTATCC | 2 cut(s) | 2677, 3253 |
| BtrI | CACGTC | 1 cut(s) | 2249 |
| BtsI | GCAGTG | 1 cut(s) | 2832 |
| BtsIMutI | CAGTG | 9 cut(s) | 125, 279, 351, 605, 1250, 1956, 2668, 2832, 3270 |
| Cac8I | GCNNGC | 5 cut(s) | 304, 308, 312, 2447, 3756 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2188 |
| CciI | TCATGA | 2 cut(s) | 3283, 3816 |
| Cfr10I | RCCGGY | 4 cut(s) | 310, 1147, 1720, 3377 |
| Cfr13I | GGNCC | 6 cut(s) | 32, 234, 573, 620, 671, 1411 |
| CseI | GACGC | 1 cut(s) | 2857 |
| Csp6I | GTAC | 6 cut(s) | 330, 562, 1729, 2370, 2418, 2707 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1767, 1802 |
| CviQI | GTAC | 6 cut(s) | 330, 562, 1729, 2370, 2418, 2707 |
| DraI | TTTAAA | 2 cut(s) | 1423, 1600 |
| DraIII | CACNNNGTG | 1 cut(s) | 1960 |
| EaeI | YGGCCR | 3 cut(s) | 3192, 3379, 3486 |
| Eam1104I | CTCTTC | 6 cut(s) | 583, 1204, 1605, 2382, 2430, 3799 |
| EarI | CTCTTC | 6 cut(s) | 583, 1204, 1605, 2382, 2430, 3799 |
| EciI | GGCGGA | 1 cut(s) | 1998 |
| Ecl136II | GAGCTC | 1 cut(s) | 3270 |
| Eco130I | CCWWGG | 7 cut(s) | 537, 1017, 1321, 1407, 2055, 3119, 3273 |
| Eco147I | AGGCCT | 2 cut(s) | 3598, 3754 |
| Eco24I | GRGCYC | 1 cut(s) | 3272 |
| Eco31I | GGTCTC | 3 cut(s) | 128, 3207, 3283 |
| Eco32I | GATATC | 1 cut(s) | 1102 |
| Eco47I | GGWCC | 4 cut(s) | 32, 234, 620, 1411 |
| Eco53kI | GAGCTC | 1 cut(s) | 3270 |
| Eco57I | CTGAAG | 5 cut(s) | 1152, 1629, 2016, 2751, 2925 |
| Eco81I | CCTNAGG | 1 cut(s) | 3593 |
| Eco88I | CYCGRG | 1 cut(s) | 3510 |
| EcoICRI | GAGCTC | 1 cut(s) | 3270 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1911 |
| EcoO109I | RGGNCCY | 1 cut(s) | 32 |
| EcoRI | GAATTC | 3 cut(s) | 187, 1201, 1513 |
| EcoRII | CCWGG | 4 cut(s) | 1432, 1576, 2934, 3132 |
| EcoRV | GATATC | 1 cut(s) | 1102 |
| EcoT14I | CCWWGG | 7 cut(s) | 537, 1017, 1321, 1407, 2055, 3119, 3273 |
| EcoT22I | ATGCAT | 2 cut(s) | 379, 3463 |
| EcoT38I | GRGCYC | 1 cut(s) | 3272 |
| ErhI | CCWWGG | 7 cut(s) | 537, 1017, 1321, 1407, 2055, 3119, 3273 |
| Esp3I | CGTCTC | 1 cut(s) | 555 |
| FaqI | GGGAC | 2 cut(s) | 28, 663 |
| FauI | CCCGC | 1 cut(s) | 3766 |
| FbaI | TGATCA | 2 cut(s) | 388, 493 |
| FblI | GTMKAC | 2 cut(s) | 590, 3081 |
| Fnu4HI | GCNGC | 8 cut(s) | 98, 408, 1218, 1476, 2127, 2222, 2308, 2477 |
| FriOI | GRGCYC | 1 cut(s) | 3272 |
| Fsp4HI | GCNGC | 8 cut(s) | 98, 408, 1218, 1476, 2127, 2222, 2308, 2477 |
| FspBI | CTAG | 9 cut(s) | 120, 414, 501, 1089, 1322, 1640, 2502, 3108, 3120 |
| GluI | GCNGC | 8 cut(s) | 98, 408, 1218, 1476, 2127, 2222, 2308, 2477 |
| GsaI | CCCAGC | 2 cut(s) | 1751, 3738 |
| GsuI | CTGGAG | 3 cut(s) | 1274, 2393, 2918 |
| HapII | CCGG | 6 cut(s) | 311, 1148, 1206, 1721, 3217, 3378 |
| HgaI | GACGC | 1 cut(s) | 2857 |
| HincII | GTYRAC | 6 cut(s) | 319, 2340, 2484, 2898, 3082, 3517 |
| HindII | GTYRAC | 6 cut(s) | 319, 2340, 2484, 2898, 3082, 3517 |
| HpaII | CCGG | 6 cut(s) | 311, 1148, 1206, 1721, 3217, 3378 |
| Hpy99I | CGWCG | 2 cut(s) | 2093, 3086 |
| HpyCH4III | ACNGT | 9 cut(s) | 91, 355, 435, 1960, 2243, 3265, 3524, 3541, 3845 |
| HpyCH4IV | ACGT | 2 cut(s) | 2248, 2426 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 205, 1223, 1811, 1980, 3098, 3159, 3378 |
| HpySE526I | ACGT | 2 cut(s) | 2248, 2426 |
| Kpn2I | TCCGGA | 1 cut(s) | 1205 |
| KroI | GCCGGC | 1 cut(s) | 310 |
| KroNI | GCCGGC | 1 cut(s) | 312 |
| Ksp22I | TGATCA | 2 cut(s) | 388, 493 |
| LguI | GCTCTTC | 1 cut(s) | 2382 |
| LmnI | GCTCC | 7 cut(s) | 213, 493, 538, 634, 2503, 3275, 3771 |
| Lsp1109I | GCAGC | 4 cut(s) | 1229, 2113, 2208, 2294 |
| MaeI | CTAG | 9 cut(s) | 120, 414, 501, 1089, 1322, 1640, 2502, 3108, 3120 |
| MaeII | ACGT | 2 cut(s) | 2248, 2426 |
| MbiI | CCGCTC | 1 cut(s) | 97 |
| MflI | RGATCY | 7 cut(s) | 800, 890, 986, 1531, 2266, 2512, 3123 |
| MhlI | GDGCHC | 2 cut(s) | 3272, 3374 |
| MlsI | TGGCCA | 2 cut(s) | 3194, 3488 |
| MluNI | TGGCCA | 2 cut(s) | 3194, 3488 |
| MmeI | TCCRAC | 2 cut(s) | 1073, 1544 |
| Mox20I | TGGCCA | 2 cut(s) | 3194, 3488 |
| Mph1103I | ATGCAT | 2 cut(s) | 379, 3463 |
| MroI | TCCGGA | 1 cut(s) | 1205 |
| MroNI | GCCGGC | 1 cut(s) | 310 |
| MroXI | GAANNNNTTC | 1 cut(s) | 752 |
| MscI | TGGCCA | 2 cut(s) | 3194, 3488 |
| MslI | CAYNNNNRTG | 1 cut(s) | 822 |
| Msp20I | TGGCCA | 2 cut(s) | 3194, 3488 |
| MspA1I | CMGCKG | 1 cut(s) | 1547 |
| MspCI | CTTAAG | 2 cut(s) | 1664, 2992 |
| MspI | CCGG | 6 cut(s) | 311, 1148, 1206, 1721, 3217, 3378 |
| MspR9I | CCNGG | 5 cut(s) | 1434, 1578, 2936, 3134, 3218 |
| Mva1269I | GAATGC | 3 cut(s) | 1948, 2505, 3348 |
| MvaI | CCWGG | 4 cut(s) | 1434, 1578, 2936, 3134 |
| MvnI | CGCG | 1 cut(s) | 1974 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 205, 1223, 1811, 1980, 3098, 3159, 3378 |
| NaeI | GCCGGC | 1 cut(s) | 312 |
| NciI | CCSGG | 1 cut(s) | 3218 |
| NgoMIV | GCCGGC | 1 cut(s) | 310 |
| NmuCI | GTSAC | 6 cut(s) | 157, 1683, 2606, 3527, 3662, 3694 |
| NsiI | ATGCAT | 2 cut(s) | 379, 3463 |
| NspI | RCATGY | 2 cut(s) | 3535, 3815 |
| NspV | TTCGAA | 1 cut(s) | 1115 |
| PagI | TCATGA | 2 cut(s) | 3283, 3816 |
| PceI | AGGCCT | 2 cut(s) | 3598, 3754 |
| PciI | ACATGT | 1 cut(s) | 3811 |
| PciSI | GCTCTTC | 1 cut(s) | 2382 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2770 |
| PctI | GAATGC | 3 cut(s) | 1948, 2505, 3348 |
| PdiI | GCCGGC | 1 cut(s) | 312 |
| PdmI | GAANNNNTTC | 1 cut(s) | 752 |
| PflFI | GACNNNGTC | 1 cut(s) | 3218 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2188 |
| PfoI | TCCNGGA | 2 cut(s) | 2934, 3132 |
| PkrI | GCNGC | 8 cut(s) | 99, 409, 1219, 1477, 2128, 2223, 2309, 2478 |
| PpuMI | RGGWCCY | 1 cut(s) | 32 |
| PscI | ACATGT | 1 cut(s) | 3811 |
| PshBI | ATTAAT | 1 cut(s) | 1899 |
| Psp124BI | GAGCTC | 1 cut(s) | 3272 |
| Psp5II | RGGWCCY | 1 cut(s) | 32 |
| Psp6I | CCWGG | 4 cut(s) | 1432, 1576, 2934, 3132 |
| PspFI | CCCAGC | 2 cut(s) | 1747, 3734 |
| PspGI | CCWGG | 4 cut(s) | 1432, 1576, 2934, 3132 |
| PspPI | GGNCC | 6 cut(s) | 32, 234, 573, 620, 671, 1411 |
| PspPPI | RGGWCCY | 1 cut(s) | 32 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2089, 2121 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2188 |
| PsuI | RGATCY | 7 cut(s) | 800, 890, 986, 1531, 2266, 2512, 3123 |
| PsyI | GACNNNGTC | 1 cut(s) | 3218 |
| PvuII | CAGCTG | 1 cut(s) | 1547 |
| RsaI | GTAC | 6 cut(s) | 331, 563, 1730, 2371, 2419, 2708 |
| RsaNI | GTAC | 6 cut(s) | 330, 562, 1729, 2370, 2418, 2707 |
| RseI | CAYNNNNRTG | 1 cut(s) | 822 |
| SacI | GAGCTC | 1 cut(s) | 3272 |
| SalI | GTCGAC | 1 cut(s) | 3080 |
| SapI | GCTCTTC | 1 cut(s) | 2382 |
| SatI | GCNGC | 8 cut(s) | 98, 408, 1218, 1476, 2127, 2222, 2308, 2477 |
| Sau96I | GGNCC | 6 cut(s) | 32, 234, 573, 620, 671, 1411 |
| ScaI | AGTACT | 2 cut(s) | 2371, 2419 |
| ScrFI | CCNGG | 5 cut(s) | 1434, 1578, 2936, 3134, 3218 |
| SduI | GDGCHC | 2 cut(s) | 3272, 3374 |
| SfcI | CTRYAG | 5 cut(s) | 292, 1152, 2115, 3523, 3537 |
| SfuI | TTCGAA | 1 cut(s) | 1115 |
| SinI | GGWCC | 4 cut(s) | 32, 234, 620, 1411 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 822 |
| SmlI | CTYRAG | 6 cut(s) | 1664, 1933, 2375, 2525, 2992, 3052 |
| SmoI | CTYRAG | 6 cut(s) | 1664, 1933, 2375, 2525, 2992, 3052 |
| SseBI | AGGCCT | 2 cut(s) | 3598, 3754 |
| SsiI | CCGC | 9 cut(s) | 97, 177, 407, 1475, 1974, 1983, 2477, 3001, 3773 |
| SspI | AATATT | 2 cut(s) | 2493, 3424 |
| SspMI | CTAG | 9 cut(s) | 120, 414, 501, 1089, 1322, 1640, 2502, 3108, 3120 |
| SstI | GAGCTC | 1 cut(s) | 3272 |
| StuI | AGGCCT | 2 cut(s) | 3598, 3754 |
| StyD4I | CCNGG | 5 cut(s) | 1432, 1576, 2934, 3132, 3216 |
| StyI | CCWWGG | 7 cut(s) | 537, 1017, 1321, 1407, 2055, 3119, 3273 |
| TaaI | ACNGT | 9 cut(s) | 91, 355, 435, 1960, 2243, 3265, 3524, 3541, 3845 |
| TaiI | ACGT | 2 cut(s) | 2251, 2429 |
| TatI | WGTACW | 5 cut(s) | 329, 561, 2369, 2417, 2706 |
| TauI | GCSGC | 4 cut(s) | 100, 410, 1478, 2479 |
| TscAI | CASTG | 9 cut(s) | 132, 279, 358, 605, 1257, 1963, 2668, 2839, 3270 |
| TseFI | GTSAC | 6 cut(s) | 157, 1683, 2606, 3527, 3662, 3694 |
| TseI | GCWGC | 4 cut(s) | 1217, 2126, 2221, 2307 |
| Tsp45I | GTSAC | 6 cut(s) | 157, 1683, 2606, 3527, 3662, 3694 |
| TspGWI | ACGGA | 1 cut(s) | 3701 |
| TspRI | CASTG | 9 cut(s) | 132, 279, 358, 605, 1257, 1963, 2668, 2839, 3270 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3218 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2188 |
| Vha464I | CTTAAG | 2 cut(s) | 1664, 2992 |
| VpaK11BI | GGWCC | 4 cut(s) | 32, 234, 620, 1411 |
| VspI | ATTAAT | 1 cut(s) | 1899 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1911 |
| XapI | RAATTY | 9 cut(s) | 187, 854, 1201, 1444, 1513, 1736, 1807, 2668, 3233 |
| XceI | RCATGY | 2 cut(s) | 3535, 3815 |
| XmaJI | CCTAGG | 2 cut(s) | 1321, 3119 |
| XmiI | GTMKAC | 2 cut(s) | 590, 3081 |
| XmnI | GAANNNNTTC | 1 cut(s) | 752 |
| XspI | CTAG | 9 cut(s) | 120, 414, 501, 1089, 1322, 1640, 2502, 3108, 3120 |
| ZrmI | AGTACT | 2 cut(s) | 2371, 2419 |
| Zsp2I | ATGCAT | 2 cut(s) | 379, 3463 |