MD08G1063600.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0009657
Physical Location & Seq
Reverse (-)
5011883 .. 5015260
3378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1063600.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGAGGACTAAAGGGTCCGGCAAAATCACATCCTTTTATTTATATACATCTCATGCATACCCGGATGCTGAAGTAATAGCCTTGTCTCCAAAATCACTGATGGCAACGAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAAAGAGAGCAAAACCTTCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGCAAAGGACGGGGAAGGAGGTGAGGAAGAAAGTGTATCTATGCCCGGAACCGACATGCGTCCACCATGACCCGTCGAGGGCTCTTGGGGACTTGACAGGGATCAAGAAGCACTTCTCTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGCGTTATGCTGTTCAGTCAGATTGGAAAGCGCACTCCAAAGTCTGTGGCACAAGGGAGTATCGATGTGATTGTGGAACCCTTTTCTCTAGGAGGGACAGTTTTATCACACACAGAGCCTTTTGCGATGCTTTAGCACAAGAGAACAGTACAAGCACTGCAGCTGCCAGATCAGCAATGCCAGCCTCAATCAACCCTATTCTCTCCTCACTCCCCCATATCCATAGCCATGGCCTCCAAGCTCTATCAGCTGTCAAGAGAGAACAAGATCAGCATCAGCATCAGCACCAGCACCAGCAGCACCAGCACCCGCAGCACCTTCCACCGTGGCTTTCTTGCTTGCCGGAAGGTGGCGAAGCCGCCAGCCTCCCTACTATGAACCTCTCTGCCTCGCCATTATTCTCCACCTCTTCATTCCAGCAATATTATTCTTTTGACCAAAACCCTAACCCTAGCGGTTCTTCTACTACCCTACTCCCCGATAACTTCCAAGTTCAACAAACCCTCGCTCCCCCTCACATGTCAGCCACCGCCTTGCTTCAGAAGGCATCAGAAATGGGTGCCACCATCAGCAAACCCTCCCCTTCCCCATATTTTCTCAAACCACCCACCCACCAATCCCACCAAGCTCTCATGTCCAACGAAACTTCGCGTGACCAAGCAATTCTATTGGATGATGGGTTTGGAAACAATGAGAATAAATCTTCACTCCTGCATGATATGATGATGATGAGTGGCTCTCAGGGTTTTCATCATGATCGTCATCAAGTCTCATCGTCATCGTTCGGAGATCACCCTCAGCAGCAGCAGGCTTTCAATGGAATTATGGTCGACGGTAATTTCGTCGAGATTAATAATAATAATAATCCTCCACAGAATTATAATAAACCAAGAAGTACTGACAACAACAACGAGGGTTTGACAAGAGATTTCCTGGGACTTAGAGCGCCATTTTCATCAGCAGCATCACATGGCGGCCATGGAGATTTTTTCAGTATTAATATGGCAGGGCTGGATCATCACCATGTGAGTACTTCTTCTCCAGCTGCTTATAACAACAATGGCCCGCAGAACGATCAGAACCAAACATCGTGGCAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz

Protein Analysis

489

Amino Acids

54.41

Weight (kDa)

8.86

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 76 - 110 5.3e-23 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 114 - 138 1.4e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 141 - 177 1.4e-22 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1245, 1416
AasI GACNNNNNNGTC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 923
AccI GTMKAC 1 cut(s) 1194
AccII CGCG 1 cut(s) 1015
AciI CCGC 6 cut(s) 674, 723, 819, 894, 1338, 1430
AclWI GGATC 2 cut(s) 311, 1386
AcoI YGGCCR 1 cut(s) 1339
AcuI CTGAAG 3 cut(s) 90, 146, 887
AdeI CACNNNGTG 1 cut(s) 1390
AfaI GTAC 3 cut(s) 514, 1261, 1396
AfiI CCNNNNNNNGG 2 cut(s) 280, 713
AflIII ACRYGT 1 cut(s) 882
AgsI TTSAA 3 cut(s) 146, 860, 1180
AjnI CCWGG 1 cut(s) 1296
AluBI AGCT 7 cut(s) 166, 199, 527, 605, 614, 992, 1409
AluI AGCT 7 cut(s) 166, 199, 527, 605, 614, 992, 1409
Alw26I GTCTC 2 cut(s) 90, 1138
AlwI GGATC 2 cut(s) 311, 1386
AoxI GGCC 3 cut(s) 595, 1339, 1426
ApeKI GCWGC 8 cut(s) 524, 527, 661, 676, 1165, 1168, 1325, 1409
ArsI GACNNNNNNTTYG 2 cut(s) 1187, 1219
AseI ATTAAT 2 cut(s) 1215, 1362
Asp700I GAANNNNTTC 2 cut(s) 113, 314
AspLEI GCGC 2 cut(s) 397, 1312
AspS9I GGNCC 2 cut(s) 15, 1427
AsuC2I CCSGG 2 cut(s) 62, 248
AsuHPI GGTGA 4 cut(s) 235, 344, 1148, 1376
AvaII GGWCC 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 923
BanII GRGCYC 1 cut(s) 286
BbvCI CCTCAGC 1 cut(s) 1161
BbvI GCAGC 8 cut(s) 514, 536, 673, 688, 1177, 1180, 1337, 1396
BccI CCATC 3 cut(s) 94, 938, 1034
BciT130I CCWGG 1 cut(s) 1298
BcnI CCSGG 2 cut(s) 62, 248
BcoDI GTCTC 2 cut(s) 90, 1138
BfaI CTAG 3 cut(s) 321, 453, 816
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 1313
BglII AGATCT 1 cut(s) 126
BmcAI AGTACT 2 cut(s) 1261, 1396
Bme1390I CCNGG 3 cut(s) 62, 248, 1298
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 15, 1427
BmiI GGNNCC 4 cut(s) 16, 252, 442, 925
BmrFI CCNGG 3 cut(s) 62, 248, 1298
BmsI GCATC 6 cut(s) 55, 481, 646, 652, 920, 1337
BoxI GACNNNNGTC 1 cut(s) 260
BplI GAGNNNNNCTC 4 cut(s) 344, 376, 1087, 1119
BpmI CTGGAG 1 cut(s) 1389
Bpu10I CCTNAGC 1 cut(s) 1161
BpuMI CCSGG 2 cut(s) 62, 248
Bsa29I ATCGAT 1 cut(s) 427
BsaBI GATNNNNATC 2 cut(s) 636, 1125
BsaJI CCNNGG 5 cut(s) 191, 592, 689, 1297, 1342
BsaXI ACNNNNNCTCC 6 cut(s) 448, 478, 856, 886, 1387, 1417
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 713
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 2 cut(s) 636, 1125
BseBI CCWGG 1 cut(s) 1298
BseCI ATCGAT 1 cut(s) 427
BseDI CCNNGG 5 cut(s) 191, 592, 689, 1297, 1342
BseGI GGATG 3 cut(s) 29, 70, 1042
BseJI GATNNNNATC 2 cut(s) 636, 1125
BseLI CCNNNNNNNGG 2 cut(s) 280, 713
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 2 cut(s) 1118, 1175
BseRI GAGGAG 1 cut(s) 559
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 8 cut(s) 514, 536, 673, 688, 1177, 1180, 1337, 1396
Bsh1236I CGCG 1 cut(s) 1015
BshFI GGCC 3 cut(s) 597, 1341, 1428
BshNI GGYRCC 1 cut(s) 923
BshVI ATCGAT 1 cut(s) 427
BsiSI CCGG 4 cut(s) 18, 62, 248, 707
BslFI GGGAC 3 cut(s) 305, 473, 1314
BslI CCNNNNNNNGG 2 cut(s) 280, 713
BsmAI GTCTC 2 cut(s) 90, 1138
BsmFI GGGAC 3 cut(s) 305, 473, 1314
BsnI GGCC 3 cut(s) 597, 1341, 1428
Bsp1286I GDGCHC 2 cut(s) 183, 286
Bsp143I GATC 8 cut(s) 126, 303, 533, 631, 1120, 1153, 1378, 1438
Bsp19I CCATGG 3 cut(s) 191, 592, 1342
BspACI CCGC 6 cut(s) 674, 723, 819, 894, 1338, 1430
BspANI GGCC 3 cut(s) 597, 1341, 1428
BspCNI CTCAG 2 cut(s) 1117, 1174
BspDI ATCGAT 1 cut(s) 427
BspFNI CGCG 1 cut(s) 1015
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 4 cut(s) 16, 252, 442, 925
BspMAI CTGCAG 1 cut(s) 526
BspPI GGATC 2 cut(s) 311, 1386
BspT107I GGYRCC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 546
BssECI CCNNGG 5 cut(s) 191, 592, 689, 1297, 1342
BssMI GATC 8 cut(s) 126, 303, 533, 631, 1120, 1153, 1378, 1438
BssT1I CCWWGG 3 cut(s) 191, 592, 1342
Bst2UI CCWGG 1 cut(s) 1298
Bst4CI ACNGT 5 cut(s) 332, 464, 512, 690, 1199
Bst6I CTCTTC 2 cut(s) 169, 778
BstAPI GCANNNNNTGC 1 cut(s) 187
BstC8I GCNNGC 5 cut(s) 546, 704, 727, 1173, 1430
BstDEI CTNAG 3 cut(s) 1104, 1161, 1304
BstDSI CCRYGG 4 cut(s) 191, 592, 689, 1342
BstF5I GGATG 3 cut(s) 29, 70, 1042
BstFNI CGCG 1 cut(s) 1015
BstH2I RGCGCY 1 cut(s) 1313
BstHHI GCGC 2 cut(s) 397, 1312
BstKTI GATC 8 cut(s) 129, 306, 536, 634, 1123, 1156, 1381, 1441
BstMAI GTCTC 2 cut(s) 90, 1138
BstMBI GATC 8 cut(s) 126, 303, 533, 631, 1120, 1153, 1378, 1438
BstMWI GCNNNNNNNGC 8 cut(s) 187, 196, 536, 545, 611, 661, 667, 676
BstNI CCWGG 1 cut(s) 1298
BstNSI RCATGY 2 cut(s) 261, 886
BstPAI GACNNNNGTC 1 cut(s) 260
BstSCI CCNGG 3 cut(s) 60, 246, 1296
BstSFI CTRYAG 1 cut(s) 522
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 1 cut(s) 1015
BstV1I GCAGC 8 cut(s) 514, 536, 673, 688, 1177, 1180, 1337, 1396
BstX2I RGATCY 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 427
BsuRI GGCC 3 cut(s) 597, 1341, 1428
BsuTUI ATCGAT 1 cut(s) 427
BtgI CCRYGG 4 cut(s) 191, 592, 689, 1342
BtgZI GCGATG 1 cut(s) 504
BtsCI GGATG 3 cut(s) 29, 70, 1042
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 2 cut(s) 95, 519
Cac8I GCNNGC 5 cut(s) 546, 704, 727, 1173, 1430
CciI TCATGA 1 cut(s) 1117
CfoI GCGC 2 cut(s) 397, 1312
Cfr13I GGNCC 2 cut(s) 15, 1427
ClaI ATCGAT 1 cut(s) 427
CseI GACGC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 513, 1260, 1395
CspCI CAANNNNNGTGG 3 cut(s) 391, 426, 1436
CviQI GTAC 3 cut(s) 513, 1260, 1395
DdeI CTNAG 3 cut(s) 1104, 1161, 1304
DpnI GATC 8 cut(s) 128, 305, 535, 633, 1122, 1155, 1380, 1440
DpnII GATC 8 cut(s) 126, 303, 533, 631, 1120, 1153, 1378, 1438
DraIII CACNNNGTG 1 cut(s) 1390
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 1339
Eam1104I CTCTTC 2 cut(s) 169, 778
EarI CTCTTC 2 cut(s) 169, 778
Eco130I CCWWGG 3 cut(s) 191, 592, 1342
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 15
Eco57I CTGAAG 3 cut(s) 90, 146, 887
EcoRII CCWGG 1 cut(s) 1296
EcoT14I CCWWGG 3 cut(s) 191, 592, 1342
EcoT22I ATGCAT 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 3 cut(s) 191, 592, 1342
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 3 cut(s) 305, 473, 1314
FauI CCCGC 2 cut(s) 681, 1437
FblI GTMKAC 1 cut(s) 1194
FokI GGATG 3 cut(s) 16, 77, 1049
FriOI GRGCYC 1 cut(s) 286
FspBI CTAG 3 cut(s) 321, 453, 816
GlaI GCGC 2 cut(s) 396, 1311
GsuI CTGGAG 1 cut(s) 1389
HaeII RGCGCY 1 cut(s) 1313
HaeIII GGCC 3 cut(s) 597, 1341, 1428
HapII CCGG 4 cut(s) 18, 62, 248, 707
HgaI GACGC 1 cut(s) 250
HhaI GCGC 2 cut(s) 397, 1312
Hin6I GCGC 2 cut(s) 395, 1310
HinP1I GCGC 2 cut(s) 395, 1310
HincII GTYRAC 1 cut(s) 1195
HindII GTYRAC 1 cut(s) 1195
HinfI GANTC 1 cut(s) 114
HpaII CCGG 4 cut(s) 18, 62, 248, 707
HphI GGTGA 4 cut(s) 235, 344, 1148, 1376
Hpy166II GTNNAC 2 cut(s) 265, 1195
Hpy188I TCNGA 5 cut(s) 385, 906, 916, 1151, 1443
Hpy188III TCNNGA 5 cut(s) 307, 321, 619, 1118, 1210
Hpy8I GTNNAC 2 cut(s) 265, 1195
Hpy99I CGWCG 3 cut(s) 280, 1199, 1211
HpyAV CCTTC 6 cut(s) 170, 211, 692, 704, 901, 957
HpyCH4III ACNGT 5 cut(s) 332, 464, 512, 690, 1199
HpyCH4V TGCA 4 cut(s) 56, 132, 524, 1078
HpyF10VI GCNNNNNNNGC 8 cut(s) 187, 196, 536, 545, 611, 661, 667, 676
HpyF3I CTNAG 3 cut(s) 1104, 1161, 1304
HspAI GCGC 2 cut(s) 395, 1310
Kzo9I GATC 8 cut(s) 126, 303, 533, 631, 1120, 1153, 1378, 1438
LmnI GCTCC 1 cut(s) 877
Lsp1109I GCAGC 8 cut(s) 514, 536, 673, 688, 1177, 1180, 1337, 1396
LweI GCATC 6 cut(s) 55, 481, 646, 652, 920, 1337
MaeI CTAG 3 cut(s) 321, 453, 816
MaeIII GTNAC 1 cut(s) 1016
MalI GATC 8 cut(s) 128, 305, 535, 633, 1122, 1155, 1380, 1440
MboI GATC 8 cut(s) 126, 303, 533, 631, 1120, 1153, 1378, 1438
MboII GAAGA 7 cut(s) 186, 241, 349, 765, 816, 1059, 1392
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 183, 286
MluCI AATT 4 cut(s) 1026, 1185, 1201, 1240
MmeI TCCRAC 1 cut(s) 1026
Mph1103I ATGCAT 1 cut(s) 58
MroXI GAANNNNTTC 2 cut(s) 113, 314
MseI TTAA 2 cut(s) 1215, 1362
MslI CAYNNNNRTG 2 cut(s) 591, 1386
MspA1I CMGCKG 3 cut(s) 527, 614, 1409
MspI CCGG 4 cut(s) 18, 62, 248, 707
MspR9I CCNGG 3 cut(s) 62, 248, 1298
MvaI CCWGG 1 cut(s) 1298
MvnI CGCG 1 cut(s) 1015
MwoI GCNNNNNNNGC 8 cut(s) 187, 196, 536, 545, 611, 661, 667, 676
NciI CCSGG 2 cut(s) 62, 248
NcoI CCATGG 3 cut(s) 191, 592, 1342
NdeII GATC 8 cut(s) 126, 303, 533, 631, 1120, 1153, 1378, 1438
NlaIV GGNNCC 4 cut(s) 16, 252, 442, 925
NmuCI GTSAC 1 cut(s) 1016
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 2 cut(s) 261, 886
PagI TCATGA 1 cut(s) 1117
PciI ACATGT 1 cut(s) 882
PcsI WCGNNNNNNNCGW 1 cut(s) 1203
PdmI GAANNNNTTC 2 cut(s) 113, 314
PfeI GAWTC 1 cut(s) 114
PscI ACATGT 1 cut(s) 882
PshAI GACNNNNGTC 1 cut(s) 260
PshBI ATTAAT 2 cut(s) 1215, 1362
PsiI TTATAA 2 cut(s) 1245, 1416
Psp6I CCWGG 1 cut(s) 1296
PspGI CCWGG 1 cut(s) 1296
PspN4I GGNNCC 4 cut(s) 16, 252, 442, 925
PspPI GGNCC 2 cut(s) 15, 1427
PstI CTGCAG 1 cut(s) 526
PsuI RGATCY 1 cut(s) 126
PvuII CAGCTG 3 cut(s) 527, 614, 1409
RsaI GTAC 3 cut(s) 514, 1261, 1396
RsaNI GTAC 3 cut(s) 513, 1260, 1395
RseI CAYNNNNRTG 2 cut(s) 591, 1386
SalI GTCGAC 1 cut(s) 1193
SaqAI TTAA 2 cut(s) 1215, 1362
Sau3AI GATC 8 cut(s) 126, 303, 533, 631, 1120, 1153, 1378, 1438
Sau96I GGNCC 2 cut(s) 15, 1427
ScaI AGTACT 2 cut(s) 1261, 1396
ScrFI CCNGG 3 cut(s) 62, 248, 1298
SduI GDGCHC 2 cut(s) 183, 286
SfaNI GCATC 6 cut(s) 55, 481, 646, 652, 920, 1337
SfcI CTRYAG 1 cut(s) 522
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 591, 1386
Sse9I AATT 4 cut(s) 1026, 1185, 1201, 1240
SsiI CCGC 6 cut(s) 674, 723, 819, 894, 1338, 1430
SspI AATATT 1 cut(s) 788
SspMI CTAG 3 cut(s) 321, 453, 816
StyD4I CCNGG 3 cut(s) 60, 246, 1296
StyI CCWWGG 3 cut(s) 191, 592, 1342
TaaI ACNGT 5 cut(s) 332, 464, 512, 690, 1199
TaqI TCGA 4 cut(s) 278, 427, 1194, 1209
TasI AATT 4 cut(s) 1026, 1185, 1201, 1240
TatI WGTACW 3 cut(s) 512, 1259, 1394
TauI GCSGC 2 cut(s) 725, 1341
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 1215, 1362
Tru9I TTAA 2 cut(s) 1215, 1362
TscAI CASTG 2 cut(s) 102, 526
TseFI GTSAC 1 cut(s) 1016
TseI GCWGC 8 cut(s) 524, 527, 661, 676, 1165, 1168, 1325, 1409
Tsp45I GTSAC 1 cut(s) 1016
TspDTI ATGAA 4 cut(s) 755, 765, 1103, 1308
TspRI CASTG 2 cut(s) 102, 526
VpaK11BI GGWCC 1 cut(s) 15
VspI ATTAAT 2 cut(s) 1215, 1362
XbaI TCTAGA 1 cut(s) 320
XceI RCATGY 2 cut(s) 261, 886
XmiI GTMKAC 1 cut(s) 1194
XmnI GAANNNNTTC 2 cut(s) 113, 314
XspI CTAG 3 cut(s) 321, 453, 816
ZrmI AGTACT 2 cut(s) 1261, 1396
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.