Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009657

Physical Location & Seq

Genomic Coordinates Forward (+)

53108382 .. 53118036

Gene Structure 9655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0385600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAAGAAGGGTTAGCTAGTGCGAGAGCTGTGATAAGAGAAGCAGGTCGATCAAAACGATACACATCATACAGAAAGGGGGGATTTGTGCCCCGAGGATCCGTTTACATCAACCCTTATTCCTTTCATCAGAGCCACATTGAGATGGAAAAGCGATTTCGAATTTGGCCATACAAGGAAGGAGAGCCACCACTCTTCTACAACGGTCCAGTGAATGACATATACTCCATCGAAGGACAGTTCATGGATGAACTTAGGAAGAGCCCTTTTGCAGCACAAGACCCTAATGAGGCCATTGCGTTCTATCTTCCCATCAGTGTTGTCAGCATTGTGAGATACGTATATAGACCTTACACCAGCTACTCACGCCTACGGCTCCAGATCATCATTGAGGACTACATTAGCATCATGGCAAAGAGATACCCATACTGGAATAGAAGCAATGGGGCTGATCATTTTTTTGTTTCTTGCCATGATTGGGCACCGGATGTTTCAGTTGGCAACCCTAAGCTCTTCAAGAACTTCATTAGAGTACTCTGCAATGCCAACTCCTCAGAAGGCTTTCAAGCAATCCGAGACGTCTCCTTACCCGAAATCAAAATCCCTTTTGGCAAGCTTGGTCCACCCCTACTCACTCACCCCCCAGAAAACCGATCAATCTTCGCCTTCTTCGCAGGTGGTGATCATGGAGACGTGAGAAGGCGCCTCTTCCAGCATTGGAAAAACAAAGATGGTGAGATCAAAGTCCATGACTACCTCCCCAAAACCCAAAACTACACAGAGCTAATGAGCAAGAGCAAGTTTTGTTTGTGCCCTAGTGGGTATGAAGTTGCGAGCCCGAGAGTGGTCGAATCAATTTACGCAGGATGCGTTCCTGTCATCATTTCAGATGCTTATGTGATCCCCTTTAGTGATGTTCTTGATTGGAGCAAGTTTTCGGTTCATGTTTCGGTGGCAAAGATACCGGAGCTGAAGTCGATTCTACAAACAATTTCTGAGCATGAGTATGTAAAAAAACAAAAGGGGGTGATGCAAGTGCAGCGACACTTCGTGCTGAACCGACCGTCGAAGCCGTTTGATATGTTGCATATGGTGATGCATTCGGTTTGGCTCAGGAGGCTTAATTTGAGGTTGTTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009908 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0090567 GO:0098656 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

380

Amino Acids

43.93

Weight (kDa)

9.37

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	34 - 330	1.5e-63	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31720 FvH4_2g31720 FvH4_2g31720
malus_domestica	MD08G1063600.v1.1 MD15G1058000.v1.1
prunus_persica	Prupe.1G410700_v2.0.a1 Prupe.1G410700_v2.0.a1
pyrus_communis	pycom08g05230 pycom15g05460
rosa_chinensis	RchiOBHm_Chr6g0311101
rosa_laevigata	RLG00000010435
rosa_multiflora	Rmu_sc0008967.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158020
rosa_rugosa	Rorug06G0385500 Rorug06G0385500 Rorug06G0385500 Rorug06G0385600
rosa_samantha	Rh6AG499500 Rh6BG510100 Rh6CG515900 Rh6DG502400
rosa_wichuraiana	Rw6G043510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	665
AatII	GACGTC	1 cut(s)	582
Acc36I	ACCTGC	2 cut(s)	35, 665
AccB1I	GGYRCC	2 cut(s)	481, 702
AclWI	GGATC	3 cut(s)	93, 106, 895
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	992
AcyI	GRCGYC	2 cut(s)	579, 703
AdeI	CACNNNGTG	1 cut(s)	1051
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	3 cut(s)	289, 478, 844
AgsI	TTSAA	2 cut(s)	517, 566
AjiI	CACGTC	1 cut(s)	694
AluBI	AGCT	7 cut(s)	17, 29, 360, 511, 616, 784, 970
AluI	AGCT	7 cut(s)	17, 29, 360, 511, 616, 784, 970
Alw26I	GTCTC	3 cut(s)	570, 586, 684
AlwI	GGATC	3 cut(s)	93, 106, 895
Ama87I	CYCGRG	2 cut(s)	93, 838
AoxI	GGCC	2 cut(s)	167, 291
ApeKI	GCWGC	2 cut(s)	272, 1039
ApoI	RAATTY	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	2 cut(s)	206, 620
AsuHPI	GGTGA	5 cut(s)	629, 692, 746, 1039, 1105
AsuII	TTCGAA	1 cut(s)	160
AvaI	CYCGRG	2 cut(s)	93, 838
AvaII	GGWCC	2 cut(s)	206, 620
BaeGI	GKGCMC	3 cut(s)	93, 484, 815
BalI	TGGCCA	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	98
BanI	GGYRCC	2 cut(s)	481, 702
BanII	GRGCYC	2 cut(s)	266, 839
BbvI	GCAGC	2 cut(s)	284, 1051
BccI	CCATC	4 cut(s)	139, 236, 320, 725
BceAI	ACGGC	2 cut(s)	389, 1057
BclI	TGATCA	2 cut(s)	451, 682
BcoDI	GTCTC	3 cut(s)	570, 586, 684
BfaI	CTAG	2 cut(s)	18, 816
BfoI	RGCGCY	1 cut(s)	706
BfuAI	ACCTGC	2 cut(s)	35, 665
BisI	GCNGC	2 cut(s)	273, 1040
BlsI	GCNGC	2 cut(s)	274, 1041
BmcAI	AGTACT	1 cut(s)	534
Bme18I	GGWCC	2 cut(s)	206, 620
BmeT110I	CYCGRG	2 cut(s)	93, 838
BmgBI	CACGTC	1 cut(s)	694
BmgT120I	GGNCC	2 cut(s)	206, 620
BmiI	GGNNCC	4 cut(s)	100, 377, 483, 704
BmsI	GCATC	5 cut(s)	414, 857, 880, 1020, 1086
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	2 cut(s)	507, 1112
Bpu14I	TTCGAA	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	64
BsaHI	GRCGYC	2 cut(s)	579, 703
BsaJI	CCNNGG	1 cut(s)	94
BsaWI	WCCGGW	2 cut(s)	484, 964
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 959, 989
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 478, 844
Bse1I	ACTGG	2 cut(s)	209, 434
Bse3DI	GCAATG	3 cut(s)	294, 448, 547
Bse8I	GATNNNNATC	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	253, 493, 872
BseJI	GATNNNNATC	1 cut(s)	64
BseLI	CCNNNNNNNGG	3 cut(s)	289, 478, 844
BseMI	GCAATG	3 cut(s)	294, 448, 547
BseMII	CTCAG	3 cut(s)	567, 987, 1126
BseNI	ACTGG	2 cut(s)	209, 434
BseRI	GAGGAG	1 cut(s)	541
BseSI	GKGCMC	3 cut(s)	93, 484, 815
BseXI	GCAGC	2 cut(s)	284, 1051
BsgI	GTGCAG	1 cut(s)	1058
Bsh1285I	CGRYCG	1 cut(s)	1064
BshFI	GGCC	2 cut(s)	169, 293
BshNI	GGYRCC	2 cut(s)	481, 702
BsiEI	CGRYCG	1 cut(s)	1064
BsiHKCI	CYCGRG	2 cut(s)	93, 838
BsiSI	CCGG	2 cut(s)	485, 965
BslI	CCNNNNNNNGG	3 cut(s)	289, 478, 844
BsmAI	GTCTC	3 cut(s)	570, 586, 684
BsmBI	CGTCTC	3 cut(s)	570, 586, 684
BsmI	GAATGC	1 cut(s)	1099
BsnI	GGCC	2 cut(s)	169, 293
BsoBI	CYCGRG	2 cut(s)	93, 838
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1286I	GDGCHC	5 cut(s)	93, 266, 484, 815, 839
Bsp143I	GATC	8 cut(s)	50, 98, 381, 451, 653, 682, 738, 900
BspANI	GGCC	2 cut(s)	169, 293
BspCNI	CTCAG	3 cut(s)	566, 988, 1125
BspLI	GGNNCC	4 cut(s)	100, 377, 483, 704
BspMI	ACCTGC	2 cut(s)	35, 665
BspPI	GGATC	3 cut(s)	93, 106, 895
BspQI	GCTCTTC	2 cut(s)	254, 518
BspT104I	TTCGAA	1 cut(s)	160
BspT107I	GGYRCC	2 cut(s)	481, 702
BsrDI	GCAATG	3 cut(s)	294, 448, 547
BsrI	ACTGG	2 cut(s)	209, 434
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	8 cut(s)	50, 98, 381, 451, 653, 682, 738, 900
BssNI	GRCGYC	2 cut(s)	579, 703
Bst4CI	ACNGT	3 cut(s)	206, 240, 1065
Bst6I	CTCTTC	4 cut(s)	200, 254, 518, 713
BstACI	GRCGYC	2 cut(s)	579, 703
BstBAI	YACGTR	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	614, 835
BstDEI	CTNAG	5 cut(s)	254, 507, 553, 996, 1112
BstF5I	GGATG	3 cut(s)	253, 493, 872
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	8 cut(s)	53, 101, 384, 454, 656, 685, 741, 903
BstMAI	GTCTC	3 cut(s)	570, 586, 684
BstMBI	GATC	8 cut(s)	50, 98, 381, 451, 653, 682, 738, 900
BstMCI	CGRYCG	1 cut(s)	1064
BstMWI	GCNNNNNNNGC	4 cut(s)	366, 671, 1039, 1117
BstSLI	GKGCMC	3 cut(s)	93, 484, 815
BstSNI	TACGTA	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	284, 1051
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	169, 293
BtrI	CACGTC	1 cut(s)	694
BtsCI	GGATG	3 cut(s)	253, 493, 872
BtsIMutI	CAGTG	2 cut(s)	216, 322
BveI	ACCTGC	2 cut(s)	35, 665
Cac8I	GCNNGC	2 cut(s)	614, 835
CfoI	GCGC	1 cut(s)	705
Cfr13I	GGNCC	2 cut(s)	206, 620
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	7 cut(s)	244, 409, 473, 686, 749, 944, 1001
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	5 cut(s)	254, 507, 553, 996, 1112
DinI	GGCGCC	1 cut(s)	704
DpnI	GATC	8 cut(s)	52, 100, 383, 453, 655, 684, 740, 902
DpnII	GATC	8 cut(s)	50, 98, 381, 451, 653, 682, 738, 900
DraIII	CACNNNGTG	1 cut(s)	1051
EaeI	YGGCCR	1 cut(s)	167
Eam1104I	CTCTTC	4 cut(s)	200, 254, 518, 713
EarI	CTCTTC	4 cut(s)	200, 254, 518, 713
Eco105I	TACGTA	1 cut(s)	340
Eco24I	GRGCYC	2 cut(s)	266, 839
Eco47I	GGWCC	2 cut(s)	206, 620
Eco57I	CTGAAG	1 cut(s)	992
Eco88I	CYCGRG	2 cut(s)	93, 838
EcoT22I	ATGCAT	1 cut(s)	1101
EcoT38I	GRGCYC	2 cut(s)	266, 839
EgeI	GGCGCC	1 cut(s)	704
EheI	GGCGCC	1 cut(s)	704
Esp3I	CGTCTC	3 cut(s)	570, 586, 684
FaeI	CATG	7 cut(s)	247, 412, 476, 689, 752, 947, 1004
FatI	CATG	7 cut(s)	243, 408, 472, 685, 748, 943, 1000
FauNDI	CATATG	1 cut(s)	1089
FbaI	TGATCA	2 cut(s)	451, 682
Fnu4HI	GCNGC	2 cut(s)	273, 1040
FokI	GGATG	3 cut(s)	260, 500, 879
FriOI	GRGCYC	2 cut(s)	266, 839
Fsp4HI	GCNGC	2 cut(s)	273, 1040
FspBI	CTAG	2 cut(s)	18, 816
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	2 cut(s)	273, 1040
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	2 cut(s)	169, 293
HapII	CCGG	2 cut(s)	485, 965
HhaI	GCGC	1 cut(s)	705
Hin1I	GRCGYC	2 cut(s)	579, 703
Hin1II	CATG	7 cut(s)	247, 412, 476, 689, 752, 947, 1004
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	2 cut(s)	851, 979
HpaII	CCGG	2 cut(s)	485, 965
HphI	GGTGA	5 cut(s)	629, 692, 746, 1039, 1105
Hpy166II	GTNNAC	2 cut(s)	106, 623
Hpy188I	TCNGA	5 cut(s)	132, 556, 575, 889, 997
Hpy188III	TCNNGA	4 cut(s)	379, 517, 920, 1114
Hpy8I	GTNNAC	2 cut(s)	106, 623
Hpy99I	CGWCG	1 cut(s)	1069
HpyAV	CCTTC	5 cut(s)	173, 227, 551, 676, 693
HpyCH4III	ACNGT	3 cut(s)	206, 240, 1065
HpyCH4IV	ACGT	3 cut(s)	339, 579, 693
HpyCH4V	TGCA	6 cut(s)	272, 540, 1033, 1039, 1087, 1099
HpyF10VI	GCNNNNNNNGC	4 cut(s)	366, 671, 1039, 1117
HpyF3I	CTNAG	5 cut(s)	254, 507, 553, 996, 1112
HpySE526I	ACGT	3 cut(s)	339, 579, 693
Hsp92I	GRCGYC	2 cut(s)	579, 703
Hsp92II	CATG	7 cut(s)	247, 412, 476, 689, 752, 947, 1004
HspAI	GCGC	1 cut(s)	703
KasI	GGCGCC	1 cut(s)	702
Ksp22I	TGATCA	2 cut(s)	451, 682
Kzo9I	GATC	8 cut(s)	50, 98, 381, 451, 653, 682, 738, 900
LguI	GCTCTTC	2 cut(s)	254, 518
LmnI	GCTCC	3 cut(s)	381, 927, 967
Lsp1109I	GCAGC	2 cut(s)	284, 1051
LweI	GCATC	5 cut(s)	414, 857, 880, 1020, 1086
MaeI	CTAG	2 cut(s)	18, 816
MaeII	ACGT	3 cut(s)	339, 579, 693
MalI	GATC	8 cut(s)	52, 100, 383, 453, 655, 684, 740, 902
MboI	GATC	8 cut(s)	50, 98, 381, 451, 653, 682, 738, 900
MboII	GAAGA	8 cut(s)	17, 187, 271, 299, 505, 652, 661, 700
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	5 cut(s)	93, 266, 484, 815, 839
MlsI	TGGCCA	1 cut(s)	169
MluCI	AATT	4 cut(s)	162, 855, 990, 1123
MluNI	TGGCCA	1 cut(s)	169
Mly113I	GGCGCC	1 cut(s)	703
MnlI	CCTC	8 cut(s)	89, 283, 385, 562, 716, 767, 1110, 1122
Mox20I	TGGCCA	1 cut(s)	169
Mph1103I	ATGCAT	1 cut(s)	1101
MroXI	GAANNNNTTC	1 cut(s)	561
MscI	TGGCCA	1 cut(s)	169
MseI	TTAA	1 cut(s)	1122
MslI	CAYNNNNRTG	2 cut(s)	143, 1005
Msp20I	TGGCCA	1 cut(s)	169
MspI	CCGG	2 cut(s)	485, 965
Mva1269I	GAATGC	1 cut(s)	1099
MwoI	GCNNNNNNNGC	4 cut(s)	366, 671, 1039, 1117
NarI	GGCGCC	1 cut(s)	703
NdeI	CATATG	1 cut(s)	1089
NdeII	GATC	8 cut(s)	50, 98, 381, 451, 653, 682, 738, 900
NlaIII	CATG	7 cut(s)	247, 412, 476, 689, 752, 947, 1004
NlaIV	GGNNCC	4 cut(s)	100, 377, 483, 704
NsiI	ATGCAT	1 cut(s)	1101
NspV	TTCGAA	1 cut(s)	160
PaqCI	CACCTGC	1 cut(s)	665
PciSI	GCTCTTC	2 cut(s)	254, 518
PcsI	WCGNNNNNNNCGW	2 cut(s)	55, 867
PctI	GAATGC	1 cut(s)	1099
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	851, 979
PkrI	GCNGC	2 cut(s)	274, 1041
PluTI	GGCGCC	1 cut(s)	706
Ppu21I	YACGTR	1 cut(s)	340
PspN4I	GGNNCC	4 cut(s)	100, 377, 483, 704
PspPI	GGNCC	2 cut(s)	206, 620
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	2 cut(s)	143, 1005
SapI	GCTCTTC	2 cut(s)	254, 518
SaqAI	TTAA	1 cut(s)	1122
SatI	GCNGC	2 cut(s)	273, 1040
Sau3AI	GATC	8 cut(s)	50, 98, 381, 451, 653, 682, 738, 900
Sau96I	GGNCC	2 cut(s)	206, 620
ScaI	AGTACT	1 cut(s)	534
SduI	GDGCHC	5 cut(s)	93, 266, 484, 815, 839
SfaNI	GCATC	5 cut(s)	414, 857, 880, 1020, 1086
SfoI	GGCGCC	1 cut(s)	704
SfuI	TTCGAA	1 cut(s)	160
SinI	GGWCC	2 cut(s)	206, 620
SmiMI	CAYNNNNRTG	2 cut(s)	143, 1005
SnaBI	TACGTA	1 cut(s)	340
Sse9I	AATT	4 cut(s)	162, 855, 990, 1123
SspDI	GGCGCC	1 cut(s)	702
SspMI	CTAG	2 cut(s)	18, 816
TaaI	ACNGT	3 cut(s)	206, 240, 1065
TaiI	ACGT	3 cut(s)	342, 582, 696
TaqI	TCGA	6 cut(s)	49, 160, 231, 849, 977, 1067
TasI	AATT	4 cut(s)	162, 855, 990, 1123
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	2 cut(s)	851, 979
Tru1I	TTAA	1 cut(s)	1122
Tru9I	TTAA	1 cut(s)	1122
TscAI	CASTG	2 cut(s)	216, 322
TseI	GCWGC	2 cut(s)	272, 1039
TspDTI	ATGAA	6 cut(s)	116, 232, 264, 514, 840, 932
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	2 cut(s)	216, 322
VpaK11BI	GGWCC	2 cut(s)	206, 620
XapI	RAATTY	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	2 cut(s)	18, 816
ZraI	GACGTC	1 cut(s)	580
ZrmI	AGTACT	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.