Rh6DG502400

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009657
Physical Location & Seq
Reverse (-)
65787201 .. 65790372
3172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG502400.1

Sequence Viewer

Length: 1371 bp
ATGGCAACGAACCGATTCGTTTGCGAGGTCTGCAACAAAGGGTTTCAGAGAGAGCAGAACCTTCAGCTTCACCGGAGAGGCCACAATCTGCCATGGAAGCTAAAGCAAAGGACAAACAAGGAGGTGAGGAAGAAGGTGTATCTGTGCCCGGAACCGACATGTGTCCACCATGACCCGTCGAGGGCTCTTGGAGACCTCACAGGGATCAAGAAGCACTTTTCCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAGAAGTGCTCGAAGCGATATGCGGTTCAATCGGATTGGAAAGCTCATTCTAAGATCTGTGGCACAAGAGAGTATCGATGTGACTGTGGAACCCTTTTCTCTAGGAGGGACAGTTTCATCACTCACAGAGCTTTCTGTGACGCTTTGGCACAAGAGAACAGCAACGCAGCTAGAGCCATAAACCCACTTCTCTCCTCATCACTGCCCCAACTCCACGGTGGCTTCCAACCTCATCACCTATCCCATCATCACGTGAAGAGAGAAGTACAAGATCTTCAGCTACAGCTTCCGCCGTGGATGGGCGGCGAAGCAGCCGCCTCAGCTGGTCCATCTCATCACCTCTCTAGCAATATAAACCTATCCTCATCGTCACCATTGTTCTCCACCTCTTCATTCGACCACCAGCAGTCTTTTCTGCACCAAAACCCTAACCCTAGCTCATCGGATTTCCAGCCCTCAGCTTCTGCTCACATGTCAGCCACTGCTTTGCTCCAAAAGGCGTCAGAAATGGGCGCCACTGTAAGCAAGCCTTCCTCGATGTTTCTCAAGCCCCATGACCAACAACACCAAGCTTCCCACATGATGCCGGAAACGACAGCGTTTGGCTCTTTCATGGAGCAGGCTGGTGCCAACTCTGGCGGCGCAGCAGCAGCTTCTAATAACTCTCTTTTGCATGATATGATGATGATGACTTCTCATCTGCAGCAACCTTCTTCCGCGGCTCGTGGCGGGTTTGACCAGCTTTCATCCTCGTCATCCTTTGGAGATCATCATCATCAGGGCTTCAATGGATCTATGGTGATGGGTAGTTTCGCTGAAAATGTTAACCCTTCCCCTCAGAAGAAACTAATCACCGGGGAATCTCAGCTTCGGAGGACTAGTAGTACTACTGATGGAGGAGGAGGAGGAGGTGGCGGCAGCGTTGGTGGCGGGATGAATGAGGGAATGACAAGAGATTTCTTGGGTCTGAGAGCATTTTCTTCTCAAGATGATCAAGACTTTTTCAACATGGCTGCTGCTCATGGACTCGACCAGCATGTGGTGAATTCTACTTCTTCAGCTAATTACAATGGACAGCAGCATAATCATCAGAACCAGACTTCTTGGCAAGGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz

Protein Analysis

456

Amino Acids

49.86

Weight (kDa)

8.97

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 43 - 77 4.9e-23 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 81 - 105 3.2e-15 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 108 - 143 2.9e-23 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 764, 878
AccB7I CCANNNNNTGG 1 cut(s) 1291
AccII CGCG 1 cut(s) 971
AclWI GGATC 2 cut(s) 212, 1051
AcsI RAATTY 1 cut(s) 1297
AcuI CTGAAG 3 cut(s) 47, 512, 1293
AcvI CACGTG 1 cut(s) 505
AcyI GRCGYC 2 cut(s) 752, 765
AfaI GTAC 2 cut(s) 519, 1138
AfiI CCNNNNNNNGG 3 cut(s) 181, 551, 1291
AflIII ACRYGT 2 cut(s) 158, 723
AgsI TTSAA 3 cut(s) 281, 1039, 1258
AhlI ACTAGT 1 cut(s) 1130
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 2 cut(s) 212, 1051
AlwNI CAGNNNCTG 2 cut(s) 716, 734
AoxI GGCC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 1297
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 2 cut(s) 767, 896
AspS9I GGNCC 1 cut(s) 578
AsuC2I CCSGG 2 cut(s) 149, 1108
AsuHPI GGTGA 9 cut(s) 62, 136, 245, 479, 581, 615, 1063, 1096, 1306
AvaII GGWCC 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 2 cut(s) 764, 878
BanII GRGCYC 1 cut(s) 187
BarI GAAGNNNNNNTAC 2 cut(s) 510, 542
BauI CACGAG 1 cut(s) 975
BbrPI CACGTG 1 cut(s) 505
Bbv12I GWGCWC 1 cut(s) 263
BbvCI CCTCAGC 2 cut(s) 571, 709
BccI CCATC 5 cut(s) 504, 544, 589, 1048, 1139
BceAI ACGGC 1 cut(s) 529
BcgI CGANNNNNNTGC 1 cut(s) 37
BclI TGATCA 1 cut(s) 1243
BcnI CCSGG 2 cut(s) 149, 1108
BcoDI GTCTC 1 cut(s) 186
BcuI ACTAGT 1 cut(s) 1130
BfaI CTAG 5 cut(s) 354, 423, 597, 687, 1131
BfmI CTRYAG 2 cut(s) 533, 953
BfoI RGCGCY 1 cut(s) 768
BglII AGATCT 2 cut(s) 306, 523
BmcAI AGTACT 1 cut(s) 1138
Bme1390I CCNGG 2 cut(s) 149, 1108
Bme18I GGWCC 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 4 cut(s) 153, 343, 766, 880
BmrFI CCNGG 2 cut(s) 149, 1108
BmsI GCATC 1 cut(s) 825
BoxI GACNNNNGTC 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu10I CCTNAGC 2 cut(s) 571, 709
BpuEI CTTGAG 2 cut(s) 782, 1221
BpuMI CCSGG 2 cut(s) 149, 1108
Bsa29I ATCGAT 1 cut(s) 328
BsaAI YACGTR 1 cut(s) 505
BsaBI GATNNNNATC 1 cut(s) 1023
BsaHI GRCGYC 2 cut(s) 752, 765
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 5 cut(s) 92, 466, 545, 969, 1107
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 4 cut(s) 349, 379, 1117, 1147
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 551, 1291
Bse8I GATNNNNATC 1 cut(s) 1023
BseCI ATCGAT 1 cut(s) 328
BseDI CCNNGG 5 cut(s) 92, 466, 545, 969, 1107
BseGI GGATG 4 cut(s) 555, 998, 1007, 1191
BseJI GATNNNNATC 1 cut(s) 1023
BseLI CCNNNNNNNGG 3 cut(s) 181, 551, 1291
BseMII CTCAG 5 cut(s) 585, 723, 1103, 1130, 1211
BseRI GAGGAG 5 cut(s) 436, 1164, 1167, 1170, 1173
BseSI GKGCMC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 971
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 2 cut(s) 764, 878
BshVI ATCGAT 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 263
BsiSI CCGG 4 cut(s) 73, 149, 839, 1107
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 3 cut(s) 181, 551, 1291
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 186
Bsp1286I GDGCHC 3 cut(s) 149, 187, 263
Bsp143I GATC 6 cut(s) 204, 306, 523, 1018, 1043, 1243
Bsp19I CCATGG 1 cut(s) 92
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 5 cut(s) 584, 722, 1102, 1129, 1212
BspDI ATCGAT 1 cut(s) 328
BspFNI CGCG 1 cut(s) 971
BspLI GGNNCC 4 cut(s) 153, 343, 766, 880
BspMAI CTGCAG 1 cut(s) 957
BspPI GGATC 2 cut(s) 212, 1051
BspT107I GGYRCC 2 cut(s) 764, 878
BspTNI GGTCTC 1 cut(s) 186
BssECI CCNNGG 5 cut(s) 92, 466, 545, 969, 1107
BssMI GATC 6 cut(s) 204, 306, 523, 1018, 1043, 1243
BssNI GRCGYC 2 cut(s) 752, 765
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 1 cut(s) 92
Bst2BI CACGAG 1 cut(s) 975
Bst4CI ACNGT 5 cut(s) 233, 338, 365, 470, 772
Bst6I CTCTTC 2 cut(s) 503, 646
BstACI GRCGYC 2 cut(s) 752, 765
BstBAI YACGTR 1 cut(s) 505
BstC8I GCNNGC 2 cut(s) 779, 873
BstDEI CTNAG 6 cut(s) 303, 571, 709, 1089, 1116, 1220
BstDSI CCRYGG 4 cut(s) 92, 466, 545, 969
BstF5I GGATG 4 cut(s) 555, 998, 1007, 1191
BstFNI CGCG 1 cut(s) 971
BstH2I RGCGCY 1 cut(s) 768
BstHHI GCGC 2 cut(s) 767, 896
BstKTI GATC 6 cut(s) 207, 309, 526, 1021, 1046, 1246
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 6 cut(s) 204, 306, 523, 1018, 1043, 1243
BstMWI GCNNNNNNNGC 6 cut(s) 30, 97, 425, 572, 902, 1179
BstNSI RCATGY 3 cut(s) 162, 727, 1292
BstPAI GACNNNNGTC 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 147, 1106
BstSFI CTRYAG 2 cut(s) 533, 953
BstSLI GKGCMC 1 cut(s) 149
BstUI CGCG 1 cut(s) 971
BstX2I RGATCY 3 cut(s) 306, 523, 1043
BstYI RGATCY 3 cut(s) 306, 523, 1043
Bsu15I ATCGAT 1 cut(s) 328
BsuRI GGCC 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 328
BtgI CCRYGG 4 cut(s) 92, 466, 545, 969
BtsCI GGATG 4 cut(s) 555, 998, 1007, 1191
BtsI GCAGTG 2 cut(s) 452, 732
BtsIMutI CAGTG 3 cut(s) 452, 732, 768
Cac8I GCNNGC 2 cut(s) 779, 873
CaiI CAGNNNCTG 2 cut(s) 716, 734
CfoI GCGC 2 cut(s) 767, 896
Cfr13I GGNCC 1 cut(s) 578
Cfr42I CCGCGG 1 cut(s) 972
ClaI ATCGAT 1 cut(s) 328
CseI GACGC 2 cut(s) 401, 741
Csp6I GTAC 2 cut(s) 518, 1137
CviQI GTAC 2 cut(s) 518, 1137
DdeI CTNAG 6 cut(s) 303, 571, 709, 1089, 1116, 1220
DinI GGCGCC 1 cut(s) 766
DpnI GATC 6 cut(s) 206, 308, 525, 1020, 1045, 1245
DpnII GATC 6 cut(s) 204, 306, 523, 1018, 1043, 1243
Eam1104I CTCTTC 2 cut(s) 503, 646
EarI CTCTTC 2 cut(s) 503, 646
EciI GGCGGA 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 578
Eco57I CTGAAG 3 cut(s) 47, 512, 1293
Eco72I CACGTG 1 cut(s) 505
EcoRI GAATTC 1 cut(s) 1297
EcoT14I CCWWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 187
EgeI GGCGCC 1 cut(s) 766
EheI GGCGCC 1 cut(s) 766
ErhI CCWWGG 1 cut(s) 92
FalI AAGNNNNNCTT 4 cut(s) 200, 232, 766, 798
FaqI GGGAC 1 cut(s) 374
FauI CCCGC 2 cut(s) 974, 1175
FbaI TGATCA 1 cut(s) 1243
FokI GGATG 4 cut(s) 562, 985, 994, 1198
FriOI GRGCYC 1 cut(s) 187
FspBI CTAG 5 cut(s) 354, 423, 597, 687, 1131
GlaI GCGC 2 cut(s) 766, 895
HaeII RGCGCY 1 cut(s) 768
HaeIII GGCC 1 cut(s) 81
HapII CCGG 4 cut(s) 73, 149, 839, 1107
HgaI GACGC 2 cut(s) 401, 741
HhaI GCGC 2 cut(s) 767, 896
Hin1I GRCGYC 2 cut(s) 752, 765
Hin6I GCGC 2 cut(s) 765, 894
HinP1I GCGC 2 cut(s) 765, 894
HincII GTYRAC 1 cut(s) 1078
HindII GTYRAC 1 cut(s) 1078
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 3 cut(s) 15, 1112, 1278
HpaI GTTAAC 1 cut(s) 1078
HpaII CCGG 4 cut(s) 73, 149, 839, 1107
HphI GGTGA 9 cut(s) 62, 136, 245, 479, 581, 615, 1063, 1096, 1306
Hpy166II GTNNAC 2 cut(s) 166, 1078
Hpy188I TCNGA 8 cut(s) 48, 286, 697, 757, 1092, 1125, 1221, 1344
Hpy188III TCNNGA 4 cut(s) 208, 222, 1238, 1247
Hpy8I GTNNAC 2 cut(s) 166, 1078
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 5 cut(s) 71, 127, 792, 972, 1092
HpyCH4III ACNGT 5 cut(s) 233, 338, 365, 470, 772
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 4 cut(s) 33, 670, 925, 955
HpyF10VI GCNNNNNNNGC 6 cut(s) 30, 97, 425, 572, 902, 1179
HpyF3I CTNAG 6 cut(s) 303, 571, 709, 1089, 1116, 1220
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 2 cut(s) 752, 765
HspAI GCGC 2 cut(s) 765, 894
KasI GGCGCC 1 cut(s) 764
Ksp22I TGATCA 1 cut(s) 1243
KspAI GTTAAC 1 cut(s) 1078
KspI CCGCGG 1 cut(s) 972
Kzo9I GATC 6 cut(s) 204, 306, 523, 1018, 1043, 1243
LmnI GCTCC 2 cut(s) 747, 868
LweI GCATC 1 cut(s) 825
MaeI CTAG 5 cut(s) 354, 423, 597, 687, 1131
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 3 cut(s) 332, 389, 621
MalI GATC 6 cut(s) 206, 308, 525, 1020, 1045, 1245
MboI GATC 6 cut(s) 204, 306, 523, 1018, 1043, 1243
MboII GAAGA 9 cut(s) 142, 250, 518, 520, 633, 957, 1105, 1224, 1299
MflI RGATCY 3 cut(s) 306, 523, 1043
MhlI GDGCHC 3 cut(s) 149, 187, 263
MluCI AATT 3 cut(s) 1297, 1315, 1366
Mly113I GGCGCC 1 cut(s) 765
MlyI GAGTC 1 cut(s) 1272
MmeI TCCRAC 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 1077
MspA1I CMGCKG 2 cut(s) 575, 971
MspI CCGG 4 cut(s) 73, 149, 839, 1107
MspR9I CCNGG 2 cut(s) 149, 1108
MvnI CGCG 1 cut(s) 971
MwoI GCNNNNNNNGC 6 cut(s) 30, 97, 425, 572, 902, 1179
NarI GGCGCC 1 cut(s) 765
NciI CCSGG 2 cut(s) 149, 1108
NcoI CCATGG 1 cut(s) 92
NdeII GATC 6 cut(s) 204, 306, 523, 1018, 1043, 1243
NlaIV GGNNCC 4 cut(s) 153, 343, 766, 880
NmuCI GTSAC 3 cut(s) 332, 389, 621
NspI RCATGY 3 cut(s) 162, 727, 1292
PciI ACATGT 2 cut(s) 158, 723
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 2 cut(s) 15, 1112
PflMI CCANNNNNTGG 1 cut(s) 1291
PleI GAGTC 1 cut(s) 1272
PluTI GGCGCC 1 cut(s) 768
PmaCI CACGTG 1 cut(s) 505
PmlI CACGTG 1 cut(s) 505
PpsI GAGTC 1 cut(s) 1272
Ppu21I YACGTR 1 cut(s) 505
PscI ACATGT 2 cut(s) 158, 723
PshAI GACNNNNGTC 1 cut(s) 161
PspCI CACGTG 1 cut(s) 505
PspN4I GGNNCC 4 cut(s) 153, 343, 766, 880
PspPI GGNCC 1 cut(s) 578
PstI CTGCAG 1 cut(s) 957
PstNI CAGNNNCTG 2 cut(s) 716, 734
PsuI RGATCY 3 cut(s) 306, 523, 1043
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 519, 1138
RsaNI GTAC 2 cut(s) 518, 1137
SacII CCGCGG 1 cut(s) 972
SaqAI TTAA 1 cut(s) 1077
Sau3AI GATC 6 cut(s) 204, 306, 523, 1018, 1043, 1243
Sau96I GGNCC 1 cut(s) 578
ScaI AGTACT 1 cut(s) 1138
SchI GAGTC 1 cut(s) 1272
ScrFI CCNGG 2 cut(s) 149, 1108
SduI GDGCHC 3 cut(s) 149, 187, 263
SfaNI GCATC 1 cut(s) 825
SfcI CTRYAG 2 cut(s) 533, 953
SfoI GGCGCC 1 cut(s) 766
Sfr303I CCGCGG 1 cut(s) 972
SgrBI CCGCGG 1 cut(s) 972
SinI GGWCC 1 cut(s) 578
SmlI CTYRAG 2 cut(s) 797, 1236
SmoI CTYRAG 2 cut(s) 797, 1236
SpeI ACTAGT 1 cut(s) 1130
Sse9I AATT 3 cut(s) 1297, 1315, 1366
SspDI GGCGCC 1 cut(s) 764
SspMI CTAG 5 cut(s) 354, 423, 597, 687, 1131
StyD4I CCNGG 2 cut(s) 147, 1106
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 5 cut(s) 233, 338, 365, 470, 772
TaiI ACGT 1 cut(s) 507
TaqI TCGA 6 cut(s) 179, 263, 328, 648, 788, 1281
TasI AATT 3 cut(s) 1297, 1315, 1366
TatI WGTACW 2 cut(s) 517, 1136
TauI GCSGC 5 cut(s) 558, 569, 894, 974, 1170
TfiI GAWTC 2 cut(s) 15, 1112
Tru1I TTAA 1 cut(s) 1077
Tru9I TTAA 1 cut(s) 1077
TscAI CASTG 3 cut(s) 459, 739, 775
TseFI GTSAC 3 cut(s) 332, 389, 621
Tsp45I GTSAC 3 cut(s) 332, 389, 621
TspDTI ATGAA 5 cut(s) 358, 633, 853, 987, 1202
TspRI CASTG 3 cut(s) 459, 739, 775
Van91I CCANNNNNTGG 1 cut(s) 1291
VpaK11BI GGWCC 1 cut(s) 578
XapI RAATTY 1 cut(s) 1297
XceI RCATGY 3 cut(s) 162, 727, 1292
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 5 cut(s) 354, 423, 597, 687, 1131
ZrmI AGTACT 1 cut(s) 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.