Rmu_sc0008967.1_g000004

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008967.1
Physical Location & Seq
Reverse (-)
13708 .. 16399
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008967.1_g000004.1.cds

Sequence Viewer

Length: 1578 bp
atgcaacccactagttaccagcaagtggatgagaacatgtccaatctgacttgtgcatctggagatttaagcgcttctgccaattcgagtatcagaaatgattcatcatcttcaacacaacagcaacaaccaccgcaaaagaaaaagagaaatcttccaggcaacccagacccagacgctgaagtgatagccttgtcccccaaatctctcatggcaacgaaccgattcgtttgcgaggtctgcaacaaagggtttcagagagagcagaaccttcagcttcaccggagaggccacaatctgccatggaagctaaagcaaaggacaaacaaggaggtgaggaagaaggtgtatctgtgcccggaaccgacatgtgtccaccatgacccctcgagggctcttggagacctcacagggatcaagaagcacttttccagaaagcatggtgagaagaagtggaaatgtgagaagtgctcgaagcgatatgcggttcaatcggattggaaagctcattctaagatctgtggcacaagagagtatcgatgtgactgtggaacccttttctctaggagggacagtttcatcactcacagagctttctgtgacgctttggcacaagagaacagcaacgcagctagagccataaacccacttctctcctcatcactgccccaactccacggtggcttccaacctcatcacctatcccatcatcacgtgaagagagaagtacaagatcttcagctacagcttccgccgtggatggggggcgaagcaaccgcctcagctggtccatctcatcacctctctagcaatataaacctatcctcatcgtcaccattgttctccacctcttcattcgaccaccagcagtcttttctgcaccaaaaccctaaccctagctcatctgatttccagccctcagcttctgctcacatgtcagccactgctttgcttcaaaaggcgtcagaaatgggcgccactgtaagcaagccttcctcgatgtttctcaagccccatgaccaacaacaccaagcttcccacatgatgccggaaacgacagcgtttggctctttcatggagcaggctggtgccaactctggtggagcagcggcagcttctaataactctcttttgcatgatatgatgatgatgacttctcatctgcagcaatcttcttcagcggctcgtggcgggtttgaccagctttcatcctcgtcatcctttggagatcatcatcatcagggcttcaatggatcgatggtgatgggtagtttcgctcaaaatgttaacccttcccctcagaagaaactaatcaccggggaatctcagcttcggaggactagtagtactactgatggaggaggaggaggtggcagcagcggcggtggcgggatgaatgagggaatgacaagagatttcttgggtctgagagcattttcttctcaagatgatcaagactttttcaacatggctgctgctcatggactcgaccagcatgtggtgaattctacttcttcagctaattacaatggacagcagcataatcatcagaaccagacttcttggcaaggtaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

525

Amino Acids

57.28

Weight (kDa)

8.89

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 388
AccB1I GGYRCC 2 cut(s) 974, 1088
AccB7I CCANNNNNTGG 2 cut(s) 25, 1498
AclWI GGATC 2 cut(s) 422, 1261
AcsI RAATTY 1 cut(s) 1504
AcuI CTGAAG 5 cut(s) 201, 257, 722, 1161, 1500
AcvI CACGTG 1 cut(s) 715
AcyI GRCGYC 2 cut(s) 962, 975
AfaI GTAC 2 cut(s) 729, 1348
AfeI AGCGCT 1 cut(s) 73
AfiI CCNNNNNNNGG 4 cut(s) 25, 391, 761, 1498
AflIII ACRYGT 3 cut(s) 36, 368, 933
AgsI TTSAA 5 cut(s) 114, 491, 956, 1249, 1465
AhlI ACTAGT 2 cut(s) 11, 1340
AjnI CCWGG 1 cut(s) 157
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 2 cut(s) 422, 1261
AlwNI CAGNNNCTG 3 cut(s) 179, 926, 944
Ama87I CYCGRG 1 cut(s) 388
Aor51HI AGCGCT 1 cut(s) 73
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 9 cut(s) 629, 1106, 1112, 1165, 1374, 1377, 1472, 1475, 1537
ApoI RAATTY 1 cut(s) 1504
Asp700I GAANNNNTTC 2 cut(s) 100, 224
AspLEI GCGC 2 cut(s) 74, 977
AspS9I GGNCC 1 cut(s) 788
AsuC2I CCSGG 2 cut(s) 359, 1318
AsuHPI GGTGA 9 cut(s) 272, 346, 455, 689, 791, 825, 1273, 1306, 1513
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 1 cut(s) 788
BaeGI GKGCMC 1 cut(s) 359
BanI GGYRCC 2 cut(s) 974, 1088
BanII GRGCYC 1 cut(s) 397
BarI GAAGNNNNNNTAC 2 cut(s) 720, 752
BauI CACGAG 1 cut(s) 1185
BbrPI CACGTG 1 cut(s) 715
Bbv12I GWGCWC 1 cut(s) 473
BbvCI CCTCAGC 2 cut(s) 781, 919
BbvI GCAGC 9 cut(s) 641, 1118, 1124, 1177, 1386, 1389, 1459, 1462, 1549
BccI CCATC 6 cut(s) 714, 754, 799, 1252, 1258, 1349
BceAI ACGGC 1 cut(s) 739
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BciT130I CCWGG 1 cut(s) 159
BclI TGATCA 1 cut(s) 1450
BcnI CCSGG 2 cut(s) 359, 1318
BcoDI GTCTC 1 cut(s) 396
BcuI ACTAGT 2 cut(s) 11, 1340
BfaI CTAG 6 cut(s) 12, 564, 633, 807, 897, 1341
BfmI CTRYAG 2 cut(s) 743, 1163
BfoI RGCGCY 2 cut(s) 75, 978
BglII AGATCT 2 cut(s) 516, 733
BmcAI AGTACT 1 cut(s) 1348
Bme1390I CCNGG 3 cut(s) 159, 359, 1318
Bme18I GGWCC 1 cut(s) 788
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 788
BmiI GGNNCC 4 cut(s) 363, 553, 976, 1090
BmrFI CCNGG 3 cut(s) 159, 359, 1318
BmsI GCATC 2 cut(s) 65, 1035
BoxI GACNNNNGTC 1 cut(s) 371
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 2 cut(s) 781, 919
BpuEI CTTGAG 2 cut(s) 992, 1428
BpuMI CCSGG 2 cut(s) 359, 1318
Bsa29I ATCGAT 2 cut(s) 538, 1256
BsaAI YACGTR 1 cut(s) 715
BsaBI GATNNNNATC 1 cut(s) 1233
BsaHI GRCGYC 2 cut(s) 962, 975
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 4 cut(s) 302, 676, 755, 1317
BsaWI WCCGGW 1 cut(s) 282
BsaXI ACNNNNNCTCC 4 cut(s) 559, 589, 1327, 1357
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 391, 761, 1498
Bse8I GATNNNNATC 1 cut(s) 1233
BseBI CCWGG 1 cut(s) 159
BseCI ATCGAT 2 cut(s) 538, 1256
BseDI CCNNGG 4 cut(s) 302, 676, 755, 1317
BseGI GGATG 5 cut(s) 34, 765, 1208, 1217, 1398
BseJI GATNNNNATC 1 cut(s) 1233
BseLI CCNNNNNNNGG 4 cut(s) 25, 391, 761, 1498
BseMII CTCAG 5 cut(s) 795, 933, 1313, 1340, 1418
BseRI GAGGAG 4 cut(s) 646, 1374, 1377, 1380
BseSI GKGCMC 1 cut(s) 359
BseXI GCAGC 9 cut(s) 641, 1118, 1124, 1177, 1386, 1389, 1459, 1462, 1549
BsgI GTGCAG 1 cut(s) 863
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 2 cut(s) 974, 1088
BshVI ATCGAT 2 cut(s) 538, 1256
BsiHKAI GWGCWC 1 cut(s) 473
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 4 cut(s) 283, 359, 1049, 1317
BslFI GGGAC 2 cut(s) 181, 584
BslI CCNNNNNNNGG 4 cut(s) 25, 391, 761, 1498
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 2 cut(s) 181, 584
BsnI GGCC 1 cut(s) 291
Bso31I GGTCTC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 388
Bsp1286I GDGCHC 3 cut(s) 359, 397, 473
Bsp143I GATC 6 cut(s) 414, 516, 733, 1228, 1253, 1450
Bsp19I CCATGG 1 cut(s) 302
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 5 cut(s) 794, 932, 1312, 1339, 1419
BspDI ATCGAT 2 cut(s) 538, 1256
BspLI GGNNCC 4 cut(s) 363, 553, 976, 1090
BspMAI CTGCAG 1 cut(s) 1167
BspPI GGATC 2 cut(s) 422, 1261
BspT107I GGYRCC 2 cut(s) 974, 1088
BspTNI GGTCTC 1 cut(s) 396
BssECI CCNNGG 4 cut(s) 302, 676, 755, 1317
BssMI GATC 6 cut(s) 414, 516, 733, 1228, 1253, 1450
BssNI GRCGYC 2 cut(s) 962, 975
BssSI CACGAG 1 cut(s) 1185
BssT1I CCWWGG 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 1185
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 4 cut(s) 548, 575, 680, 982
Bst6I CTCTTC 2 cut(s) 713, 856
BstACI GRCGYC 2 cut(s) 962, 975
BstBAI YACGTR 1 cut(s) 715
BstC8I GCNNGC 2 cut(s) 989, 1083
BstDEI CTNAG 6 cut(s) 513, 781, 919, 1299, 1326, 1427
BstDSI CCRYGG 3 cut(s) 302, 676, 755
BstF5I GGATG 5 cut(s) 34, 765, 1208, 1217, 1398
BstH2I RGCGCY 2 cut(s) 75, 978
BstHHI GCGC 2 cut(s) 74, 977
BstKTI GATC 6 cut(s) 417, 519, 736, 1231, 1256, 1453
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 6 cut(s) 414, 516, 733, 1228, 1253, 1450
BstMWI GCNNNNNNNGC 6 cut(s) 240, 307, 635, 1112, 1380, 1386
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 4 cut(s) 40, 372, 937, 1499
BstPAI GACNNNNGTC 1 cut(s) 371
BstSCI CCNGG 3 cut(s) 157, 357, 1316
BstSFI CTRYAG 2 cut(s) 743, 1163
BstSLI GKGCMC 1 cut(s) 359
BstV1I GCAGC 9 cut(s) 641, 1118, 1124, 1177, 1386, 1389, 1459, 1462, 1549
BstX2I RGATCY 2 cut(s) 516, 733
BstYI RGATCY 2 cut(s) 516, 733
Bsu15I ATCGAT 2 cut(s) 538, 1256
BsuRI GGCC 1 cut(s) 291
BsuTUI ATCGAT 2 cut(s) 538, 1256
BtgI CCRYGG 3 cut(s) 302, 676, 755
BtsCI GGATG 5 cut(s) 34, 765, 1208, 1217, 1398
BtsI GCAGTG 2 cut(s) 662, 942
BtsIMutI CAGTG 3 cut(s) 662, 942, 978
Cac8I GCNNGC 2 cut(s) 989, 1083
CaiI CAGNNNCTG 3 cut(s) 179, 926, 944
CfoI GCGC 2 cut(s) 74, 977
Cfr13I GGNCC 1 cut(s) 788
ClaI ATCGAT 2 cut(s) 538, 1256
CseI GACGC 3 cut(s) 185, 611, 951
Csp6I GTAC 2 cut(s) 728, 1347
CspCI CAANNNNNGTGG 2 cut(s) 1081, 1116
CviQI GTAC 2 cut(s) 728, 1347
DdeI CTNAG 6 cut(s) 513, 781, 919, 1299, 1326, 1427
DinI GGCGCC 1 cut(s) 976
DpnI GATC 6 cut(s) 416, 518, 735, 1230, 1255, 1452
DpnII GATC 6 cut(s) 414, 516, 733, 1228, 1253, 1450
Eam1104I CTCTTC 2 cut(s) 713, 856
EarI CTCTTC 2 cut(s) 713, 856
EciI GGCGGA 1 cut(s) 741
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 788
Eco47III AGCGCT 1 cut(s) 73
Eco57I CTGAAG 5 cut(s) 201, 257, 722, 1161, 1500
Eco72I CACGTG 1 cut(s) 715
Eco88I CYCGRG 1 cut(s) 388
EcoRI GAATTC 1 cut(s) 1504
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 397
EgeI GGCGCC 1 cut(s) 976
EheI GGCGCC 1 cut(s) 976
ErhI CCWWGG 1 cut(s) 302
FalI AAGNNNNNCTT 4 cut(s) 410, 442, 976, 1008
FaqI GGGAC 2 cut(s) 181, 584
FauI CCCGC 2 cut(s) 1184, 1382
FbaI TGATCA 1 cut(s) 1450
FokI GGATG 5 cut(s) 41, 772, 1195, 1204, 1405
FriOI GRGCYC 1 cut(s) 397
FspBI CTAG 6 cut(s) 12, 564, 633, 807, 897, 1341
GlaI GCGC 2 cut(s) 73, 976
GsuI CTGGAG 1 cut(s) 81
HaeII RGCGCY 2 cut(s) 75, 978
HaeIII GGCC 1 cut(s) 291
HapII CCGG 4 cut(s) 283, 359, 1049, 1317
HgaI GACGC 3 cut(s) 185, 611, 951
HhaI GCGC 2 cut(s) 74, 977
Hin1I GRCGYC 2 cut(s) 962, 975
Hin6I GCGC 2 cut(s) 72, 975
HinP1I GCGC 2 cut(s) 72, 975
HincII GTYRAC 1 cut(s) 1288
HindII GTYRAC 1 cut(s) 1288
HindIII AAGCTT 1 cut(s) 1032
HinfI GANTC 4 cut(s) 101, 225, 1322, 1485
HpaI GTTAAC 1 cut(s) 1288
HpaII CCGG 4 cut(s) 283, 359, 1049, 1317
HphI GGTGA 9 cut(s) 272, 346, 455, 689, 791, 825, 1273, 1306, 1513
Hpy166II GTNNAC 2 cut(s) 376, 1288
Hpy188III TCNNGA 5 cut(s) 60, 418, 432, 1445, 1454
Hpy8I GTNNAC 2 cut(s) 376, 1288
HpyAV CCTTC 4 cut(s) 281, 337, 1002, 1302
HpyCH4III ACNGT 4 cut(s) 548, 575, 680, 982
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 6 cut(s) 4, 56, 243, 880, 1135, 1165
HpyF10VI GCNNNNNNNGC 6 cut(s) 240, 307, 635, 1112, 1380, 1386
HpyF3I CTNAG 6 cut(s) 513, 781, 919, 1299, 1326, 1427
HpySE526I ACGT 1 cut(s) 714
Hsp92I GRCGYC 2 cut(s) 962, 975
HspAI GCGC 2 cut(s) 72, 975
KasI GGCGCC 1 cut(s) 974
Ksp22I TGATCA 1 cut(s) 1450
KspAI GTTAAC 1 cut(s) 1288
Kzo9I GATC 6 cut(s) 414, 516, 733, 1228, 1253, 1450
LmnI GCTCC 2 cut(s) 1078, 1103
Lsp1109I GCAGC 9 cut(s) 641, 1118, 1124, 1177, 1386, 1389, 1459, 1462, 1549
LweI GCATC 2 cut(s) 65, 1035
MaeI CTAG 6 cut(s) 12, 564, 633, 807, 897, 1341
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 4 cut(s) 14, 542, 599, 831
MalI GATC 6 cut(s) 416, 518, 735, 1230, 1255, 1452
MboI GATC 6 cut(s) 414, 516, 733, 1228, 1253, 1450
MflI RGATCY 2 cut(s) 516, 733
MhlI GDGCHC 3 cut(s) 359, 397, 473
MluCI AATT 4 cut(s) 82, 1504, 1522, 1573
Mly113I GGCGCC 1 cut(s) 975
MlyI GAGTC 1 cut(s) 1479
MmeI TCCRAC 1 cut(s) 712
MroXI GAANNNNTTC 2 cut(s) 100, 224
MseI TTAA 2 cut(s) 68, 1287
MspA1I CMGCKG 4 cut(s) 785, 1109, 1181, 1380
MspI CCGG 4 cut(s) 283, 359, 1049, 1317
MspR9I CCNGG 3 cut(s) 159, 359, 1318
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 6 cut(s) 240, 307, 635, 1112, 1380, 1386
NarI GGCGCC 1 cut(s) 975
NciI CCSGG 2 cut(s) 359, 1318
NcoI CCATGG 1 cut(s) 302
NdeII GATC 6 cut(s) 414, 516, 733, 1228, 1253, 1450
NlaIV GGNNCC 4 cut(s) 363, 553, 976, 1090
NmuCI GTSAC 3 cut(s) 542, 599, 831
NspI RCATGY 4 cut(s) 40, 372, 937, 1499
PaeR7I CTCGAG 1 cut(s) 388
PciI ACATGT 3 cut(s) 36, 368, 933
PdmI GAANNNNTTC 2 cut(s) 100, 224
PfeI GAWTC 3 cut(s) 101, 225, 1322
PflMI CCANNNNNTGG 2 cut(s) 25, 1498
PleI GAGTC 1 cut(s) 1479
PluTI GGCGCC 1 cut(s) 978
PmaCI CACGTG 1 cut(s) 715
PmlI CACGTG 1 cut(s) 715
PpsI GAGTC 1 cut(s) 1479
Ppu21I YACGTR 1 cut(s) 715
PscI ACATGT 3 cut(s) 36, 368, 933
PshAI GACNNNNGTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 157
PspCI CACGTG 1 cut(s) 715
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 4 cut(s) 363, 553, 976, 1090
PspPI GGNCC 1 cut(s) 788
PspXI VCTCGAGB 1 cut(s) 388
PstI CTGCAG 1 cut(s) 1167
PstNI CAGNNNCTG 3 cut(s) 179, 926, 944
PsuI RGATCY 2 cut(s) 516, 733
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 2 cut(s) 729, 1348
RsaNI GTAC 2 cut(s) 728, 1347
SaqAI TTAA 2 cut(s) 68, 1287
Sau3AI GATC 6 cut(s) 414, 516, 733, 1228, 1253, 1450
Sau96I GGNCC 1 cut(s) 788
ScaI AGTACT 1 cut(s) 1348
SchI GAGTC 1 cut(s) 1479
ScrFI CCNGG 3 cut(s) 159, 359, 1318
SduI GDGCHC 3 cut(s) 359, 397, 473
SfaNI GCATC 2 cut(s) 65, 1035
SfcI CTRYAG 2 cut(s) 743, 1163
SfoI GGCGCC 1 cut(s) 976
Sfr274I CTCGAG 1 cut(s) 388
SinI GGWCC 1 cut(s) 788
SlaI CTCGAG 1 cut(s) 388
SmlI CTYRAG 3 cut(s) 388, 1007, 1443
SmoI CTYRAG 3 cut(s) 388, 1007, 1443
SpeI ACTAGT 2 cut(s) 11, 1340
Sse9I AATT 4 cut(s) 82, 1504, 1522, 1573
SspDI GGCGCC 1 cut(s) 974
SspMI CTAG 6 cut(s) 12, 564, 633, 807, 897, 1341
StyD4I CCNGG 3 cut(s) 157, 357, 1316
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 4 cut(s) 548, 575, 680, 982
TaiI ACGT 1 cut(s) 717
TaqI TCGA 8 cut(s) 86, 389, 473, 538, 858, 998, 1256, 1488
TasI AATT 4 cut(s) 82, 1504, 1522, 1573
TatI WGTACW 2 cut(s) 727, 1346
TauI GCSGC 3 cut(s) 1112, 1184, 1383
TfiI GAWTC 3 cut(s) 101, 225, 1322
Tru1I TTAA 2 cut(s) 68, 1287
Tru9I TTAA 2 cut(s) 68, 1287
TscAI CASTG 3 cut(s) 669, 949, 985
TseFI GTSAC 3 cut(s) 542, 599, 831
TseI GCWGC 9 cut(s) 629, 1106, 1112, 1165, 1374, 1377, 1472, 1475, 1537
Tsp45I GTSAC 3 cut(s) 542, 599, 831
TspDTI ATGAA 6 cut(s) 93, 568, 843, 1063, 1197, 1409
TspRI CASTG 3 cut(s) 669, 949, 985
Van91I CCANNNNNTGG 2 cut(s) 25, 1498
VpaK11BI GGWCC 1 cut(s) 788
XapI RAATTY 1 cut(s) 1504
XceI RCATGY 4 cut(s) 40, 372, 937, 1499
XcmI CCANNNNNNNNNTGG 2 cut(s) 208, 677
XhoI CTCGAG 1 cut(s) 388
XmnI GAANNNNTTC 2 cut(s) 100, 224
XspI CTAG 6 cut(s) 12, 564, 633, 807, 897, 1341
ZrmI AGTACT 1 cut(s) 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.