Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009657

Physical Location & Seq

Genomic Coordinates Forward (+)

3258619 .. 3260826

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGATGAATAAAGGTTTGATGGTGGATGAGAATATGTCAAATCTGACTTGTGCCTCTGGTGATTTAAGTGCTTCTAACTCAAGCATCAGAAATGAGTCATCATCTGCTGGCACAGTCTACCCTCATCCCCCATCCTCAGCACAAATTCAGCAGCAGCAAGCACCGCCACCGCCAAAGAAGAAGAGAAATCTCCCAGGCAACCCAGACCCGGATGCTGAAGTAATAGCCTTGTCTCCAAAATCACTGATGGCAACGAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAAAGAGAGCAAAACCTTCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGCAAAGGACGGGCAAGGAGGTGAGGAAGAAGGTGTATCTGTGCCCGGAACCAACATGTGTCCACCATGACCCATCAAGGGCTCTTGGGGACTTGACTGGGATCAAGAAGCACTTCTCTAGAAAGCACGGTGAGAAAAAGTGGAAGTGTGAGAAATGCTCAAAGCGGTATGCAGTTCAGTCGGACTGGAAAGCTCACTCCAAAGTCTGTGGCACAAGGGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAGGAGGGACAGTTTCATCACACACAGAGCCTTTTGTGATGCTTTAGCACAAGAGAACAATACAAGCTCTGCAGCTGCCAGATCGGTAATGCCAGCCTCAATAAACCCACTTCTCTCCTCACTCCCCCAACTCCATAGCCATGGCCTCCAAGCTCAATCAGCTGTCAAGAGAGAACAGGATCAGCATCAGCAGCAGCTCCTTCCTCCGTGGCTTTCATTCTTGCCAGAAGGCGGCGAAGCGGCCAGCCTCCCTACTATGAACCTCTCCGCCTCGCCATTATTCTCCACTTCTTCATTCCAGCAATATTATTCTTTTGGCCAAAACCCTAACCCTAGCAGCTCTTCTACTGCCCTACTCCCTGATAACTTCCAACTTCAACAAAACACCGCTTCCCCTCACATGTCAGCCACTGCCTTGCTTCAGAAGGCATCGGAAATGGGTGCGACCATCAGCAAATCCTCCCCTTCCCCATATTTTCTCAAACCACCCACCCACCAATCCCACCAAGCTCACCAAGCTCACATTTCCAACGAAACTTCGCGTGACCAAGCAATACTATTGGATGATGGATTTGGAAACAATGAGAGTAAATCTTCACTCTTCCATGATATGATGATGATGAGTAGCTCTCATGGTTTTGGTCATGATCGATCATCAAGTCTCGTCGTCGTCGTTTGGAGATCATCATCATCAGCAGCAGCAGCAGCAGCAGGCTTTCAATGGAATTATGGTCGACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_jaz

Protein Analysis

447

Amino Acids

49.19

Weight (kDa)

9.36

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31720 FvH4_2g31720 FvH4_2g31720
malus_domestica	MD08G1063600.v1.1 MD15G1058000.v1.1
prunus_persica	Prupe.1G410700_v2.0.a1 Prupe.1G410700_v2.0.a1
pyrus_communis	pycom08g05230 pycom15g05460
rosa_chinensis	RchiOBHm_Chr6g0311101
rosa_laevigata	RLG00000010435
rosa_multiflora	Rmu_sc0008967.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158020
rosa_rugosa	Rorug06G0385500 Rorug06G0385500 Rorug06G0385500 Rorug06G0385600
rosa_samantha	Rh6AG499500 Rh6BG510100 Rh6CG515900 Rh6DG502400
rosa_wichuraiana	Rw6G043510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	117, 1333
AccII	CGCG	1 cut(s)	1141
AciI	CCGC	7 cut(s)	164, 170, 514, 831, 839, 867, 987
AclWI	GGATC	2 cut(s)	458, 786
AcoI	YGGCCR	2 cut(s)	840, 916
AcsI	RAATTY	1 cut(s)	144
AcuI	CTGAAG	3 cut(s)	237, 293, 1004
AfiI	CCNNNNNNNGG	3 cut(s)	208, 427, 830
AflIII	ACRYGT	2 cut(s)	404, 999
AgsI	TTSAA	3 cut(s)	293, 977, 1319
AjnI	CCWGG	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	237, 1265
AlwI	GGATC	2 cut(s)	458, 786
AlwNI	CAGNNNCTG	1 cut(s)	1010
AoxI	GGCC	3 cut(s)	742, 840, 916
ApoI	RAATTY	1 cut(s)	144
Asp700I	GAANNNNTTC	2 cut(s)	260, 461
AsuC2I	CCSGG	2 cut(s)	209, 395
AsuHPI	GGTGA	4 cut(s)	71, 382, 491, 1103
BaeGI	GKGCMC	2 cut(s)	330, 395
BalI	TGGCCA	1 cut(s)	918
BanII	GRGCYC	1 cut(s)	433
BbvCI	CCTCAGC	1 cut(s)	136
BccI	CCATC	6 cut(s)	13, 139, 241, 430, 1055, 1160
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BciT130I	CCWGG	1 cut(s)	195
BcnI	CCSGG	2 cut(s)	209, 395
BcoDI	GTCTC	2 cut(s)	237, 1265
BfaI	CTAG	3 cut(s)	468, 600, 933
BfmI	CTRYAG	1 cut(s)	669
BglII	AGATCT	1 cut(s)	273
Bme1390I	CCNGG	3 cut(s)	195, 209, 395
BmiI	GGNNCC	2 cut(s)	399, 589
BmrFI	CCNGG	3 cut(s)	195, 209, 395
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	5 cut(s)	93, 202, 628, 793, 1037
BmuI	ACTGGG	1 cut(s)	456
BplI	GAGNNNNNCTC	4 cut(s)	491, 523, 1213, 1245
Bpu10I	CCTNAGC	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	64
BpuMI	CCSGG	2 cut(s)	209, 395
Bsa29I	ATCGAT	1 cut(s)	1249
BsaBI	GATNNNNATC	2 cut(s)	783, 1285
BsaJI	CCNNGG	4 cut(s)	193, 338, 739, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 427, 830
Bse1I	ACTGG	2 cut(s)	451, 539
Bse8I	GATNNNNATC	2 cut(s)	783, 1285
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	1249
BseDI	CCNNGG	4 cut(s)	193, 338, 739, 806
BseGI	GGATG	5 cut(s)	31, 124, 131, 217, 1168
BseJI	GATNNNNATC	2 cut(s)	783, 1285
BseLI	CCNNNNNNNGG	3 cut(s)	208, 427, 830
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	451, 539
BseRI	GAGGAG	1 cut(s)	706
BseSI	GKGCMC	2 cut(s)	330, 395
Bsh1236I	CGCG	1 cut(s)	1141
BshFI	GGCC	3 cut(s)	744, 842, 918
BshVI	ATCGAT	1 cut(s)	1249
BsiSI	CCGG	2 cut(s)	209, 395
BslFI	GGGAC	2 cut(s)	452, 620
BslI	CCNNNNNNNGG	3 cut(s)	208, 427, 830
BsmAI	GTCTC	2 cut(s)	237, 1265
BsmFI	GGGAC	2 cut(s)	452, 620
BsnI	GGCC	3 cut(s)	744, 842, 918
Bsp1286I	GDGCHC	3 cut(s)	330, 395, 433
Bsp143I	GATC	7 cut(s)	273, 450, 680, 778, 1246, 1250, 1280
Bsp19I	CCATGG	2 cut(s)	338, 739
BspACI	CCGC	7 cut(s)	164, 170, 514, 831, 839, 867, 987
BspANI	GGCC	3 cut(s)	744, 842, 918
BspCNI	CTCAG	1 cut(s)	149
BspDI	ATCGAT	1 cut(s)	1249
BspFNI	CGCG	1 cut(s)	1141
BspHI	TCATGA	1 cut(s)	1243
BspLI	GGNNCC	2 cut(s)	399, 589
BspMAI	CTGCAG	1 cut(s)	673
BspPI	GGATC	2 cut(s)	458, 786
BspQI	GCTCTTC	1 cut(s)	946
BsrI	ACTGG	2 cut(s)	451, 539
BssECI	CCNNGG	4 cut(s)	193, 338, 739, 806
BssMI	GATC	7 cut(s)	273, 450, 680, 778, 1246, 1250, 1280
BssT1I	CCWWGG	2 cut(s)	338, 739
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	4 cut(s)	115, 479, 611, 1338
Bst6I	CTCTTC	4 cut(s)	176, 316, 946, 1205
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstC8I	GCNNGC	5 cut(s)	109, 159, 693, 844, 1312
BstDEI	CTNAG	1 cut(s)	136
BstDSI	CCRYGG	3 cut(s)	338, 739, 806
BstF5I	GGATG	5 cut(s)	31, 124, 131, 217, 1168
BstFNI	CGCG	1 cut(s)	1141
BstKTI	GATC	7 cut(s)	276, 453, 683, 781, 1249, 1253, 1283
BstMAI	GTCTC	2 cut(s)	237, 1265
BstMBI	GATC	7 cut(s)	273, 450, 680, 778, 1246, 1250, 1280
BstMWI	GCNNNNNNNGC	9 cut(s)	163, 334, 343, 758, 790, 1115, 1301, 1304, 1307
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	2 cut(s)	408, 1003
BstSCI	CCNGG	3 cut(s)	193, 207, 393
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	2 cut(s)	330, 395
BstUI	CGCG	1 cut(s)	1141
BstX2I	RGATCY	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	740
BstYI	RGATCY	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	1249
BsuRI	GGCC	3 cut(s)	744, 842, 918
BsuTUI	ATCGAT	1 cut(s)	1249
BtgI	CCRYGG	3 cut(s)	338, 739, 806
BtsCI	GGATG	5 cut(s)	31, 124, 131, 217, 1168
BtsI	GCAGTG	1 cut(s)	1008
BtsIMutI	CAGTG	2 cut(s)	242, 1008
Cac8I	GCNNGC	5 cut(s)	109, 159, 693, 844, 1312
CaiI	CAGNNNCTG	1 cut(s)	1010
CciI	TCATGA	1 cut(s)	1243
ClaI	ATCGAT	1 cut(s)	1249
CspCI	CAANNNNNGTGG	2 cut(s)	538, 573
CviAII	CATG	8 cut(s)	339, 405, 416, 740, 1000, 1205, 1232, 1244
DdeI	CTNAG	1 cut(s)	136
DpnI	GATC	7 cut(s)	275, 452, 682, 780, 1248, 1252, 1282
DpnII	GATC	7 cut(s)	273, 450, 680, 778, 1246, 1250, 1280
EaeI	YGGCCR	2 cut(s)	840, 916
Eam1104I	CTCTTC	4 cut(s)	176, 316, 946, 1205
EarI	CTCTTC	4 cut(s)	176, 316, 946, 1205
EciI	GGCGGA	1 cut(s)	856
Eco130I	CCWWGG	2 cut(s)	338, 739
Eco24I	GRGCYC	1 cut(s)	433
Eco57I	CTGAAG	3 cut(s)	237, 293, 1004
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	338, 739
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	2 cut(s)	338, 739
FaeI	CATG	8 cut(s)	342, 408, 419, 743, 1003, 1208, 1235, 1247
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	2 cut(s)	452, 620
FatI	CATG	8 cut(s)	338, 404, 415, 739, 999, 1204, 1231, 1243
FblI	GTMKAC	2 cut(s)	117, 1333
FokI	GGATG	5 cut(s)	38, 111, 118, 224, 1175
FriOI	GRGCYC	1 cut(s)	433
FspBI	CTAG	3 cut(s)	468, 600, 933
HaeIII	GGCC	3 cut(s)	744, 842, 918
HapII	CCGG	2 cut(s)	209, 395
Hin1II	CATG	8 cut(s)	342, 408, 419, 743, 1003, 1208, 1235, 1247
HincII	GTYRAC	1 cut(s)	1334
HindII	GTYRAC	1 cut(s)	1334
HinfI	GANTC	2 cut(s)	95, 261
HpaII	CCGG	2 cut(s)	209, 395
HphI	GGTGA	4 cut(s)	71, 382, 491, 1103
Hpy166II	GTNNAC	3 cut(s)	118, 412, 1334
Hpy188I	TCNGA	5 cut(s)	45, 89, 532, 1023, 1033
Hpy188III	TCNNGA	4 cut(s)	454, 468, 766, 1244
Hpy8I	GTNNAC	3 cut(s)	118, 412, 1334
Hpy99I	CGWCG	4 cut(s)	1268, 1271, 1274, 1338
HpyAV	CCTTC	6 cut(s)	317, 373, 809, 821, 1018, 1074
HpyCH4III	ACNGT	4 cut(s)	115, 479, 611, 1338
HpyCH4V	TGCA	3 cut(s)	279, 521, 671
HpyF10VI	GCNNNNNNNGC	9 cut(s)	163, 334, 343, 758, 790, 1115, 1301, 1304, 1307
HpyF3I	CTNAG	1 cut(s)	136
Hsp92II	CATG	8 cut(s)	342, 408, 419, 743, 1003, 1208, 1235, 1247
Kzo9I	GATC	7 cut(s)	273, 450, 680, 778, 1246, 1250, 1280
LguI	GCTCTTC	1 cut(s)	946
LmnI	GCTCC	1 cut(s)	801
LweI	GCATC	5 cut(s)	93, 202, 628, 793, 1037
MaeI	CTAG	3 cut(s)	468, 600, 933
MaeIII	GTNAC	1 cut(s)	1142
MalI	GATC	7 cut(s)	275, 452, 682, 780, 1248, 1252, 1282
MboI	GATC	7 cut(s)	273, 450, 680, 778, 1246, 1250, 1280
MboII	GAAGA	8 cut(s)	190, 193, 333, 388, 882, 933, 1185, 1192
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	3 cut(s)	330, 395, 433
MlsI	TGGCCA	1 cut(s)	918
MluCI	AATT	2 cut(s)	144, 1324
MluNI	TGGCCA	1 cut(s)	918
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	3 cut(s)	510, 994, 1152
Mox20I	TGGCCA	1 cut(s)	918
MroXI	GAANNNNTTC	2 cut(s)	260, 461
MscI	TGGCCA	1 cut(s)	918
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	738
Msp20I	TGGCCA	1 cut(s)	918
MspA1I	CMGCKG	2 cut(s)	674, 761
MspI	CCGG	2 cut(s)	209, 395
MspR9I	CCNGG	3 cut(s)	195, 209, 395
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	1141
MwoI	GCNNNNNNNGC	9 cut(s)	163, 334, 343, 758, 790, 1115, 1301, 1304, 1307
NciI	CCSGG	2 cut(s)	209, 395
NcoI	CCATGG	2 cut(s)	338, 739
NdeII	GATC	7 cut(s)	273, 450, 680, 778, 1246, 1250, 1280
NlaIII	CATG	8 cut(s)	342, 408, 419, 743, 1003, 1208, 1235, 1247
NlaIV	GGNNCC	2 cut(s)	399, 589
NmuCI	GTSAC	1 cut(s)	1142
NspI	RCATGY	2 cut(s)	408, 1003
PagI	TCATGA	1 cut(s)	1243
PciI	ACATGT	2 cut(s)	404, 999
PciSI	GCTCTTC	1 cut(s)	946
PcsI	WCGNNNNNNNCGW	1 cut(s)	1269
PdmI	GAANNNNTTC	2 cut(s)	260, 461
PfeI	GAWTC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PscI	ACATGT	2 cut(s)	404, 999
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	399, 589
PstI	CTGCAG	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	273
PvuII	CAGCTG	2 cut(s)	674, 761
RseI	CAYNNNNRTG	1 cut(s)	738
SalI	GTCGAC	1 cut(s)	1332
SapI	GCTCTTC	1 cut(s)	946
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	7 cut(s)	273, 450, 680, 778, 1246, 1250, 1280
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	3 cut(s)	195, 209, 395
SduI	GDGCHC	3 cut(s)	330, 395, 433
SfaNI	GCATC	5 cut(s)	93, 202, 628, 793, 1037
SfcI	CTRYAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	738
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	2 cut(s)	144, 1324
SsiI	CCGC	7 cut(s)	164, 170, 514, 831, 839, 867, 987
SspI	AATATT	1 cut(s)	905
SspMI	CTAG	3 cut(s)	468, 600, 933
StyD4I	CCNGG	3 cut(s)	193, 207, 393
StyI	CCWWGG	2 cut(s)	338, 739
TaaI	ACNGT	4 cut(s)	115, 479, 611, 1338
TaqI	TCGA	2 cut(s)	1249, 1333
TasI	AATT	2 cut(s)	144, 1324
TauI	GCSGC	2 cut(s)	834, 842
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	249, 1015
TseFI	GTSAC	1 cut(s)	1142
Tsp45I	GTSAC	1 cut(s)	1142
TspDTI	ATGAA	6 cut(s)	20, 305, 604, 804, 872, 882
TspGWI	ACGGA	1 cut(s)	795
TspRI	CASTG	2 cut(s)	249, 1015
XapI	RAATTY	1 cut(s)	144
XbaI	TCTAGA	1 cut(s)	467
XceI	RCATGY	2 cut(s)	408, 1003
XmiI	GTMKAC	2 cut(s)	117, 1333
XmnI	GAANNNNTTC	2 cut(s)	260, 461
XspI	CTAG	3 cut(s)	468, 600, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.