Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009657

Physical Location & Seq

Genomic Coordinates Forward (+)

35889034 .. 35892412

Gene Structure 3379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G410700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGATGAAAGGTTTGATGGGGGATGAGAATATGTCCAATTTGACCTGTGCATCTGGTGATTTAAGTGCTTCCAATTCAAGTATCAGAAATGAGTCATCTTCAGCTGGCACACTGTACCCTCAGCAGCAATCCTCATCAGCAAATGATATTCAGCAGCCGCAGCAGCCACCACCGCCAAAGAAGAAGAGAAATCTTCCAGGCAACCCAGACCCAGATGCTGAAGTGATAGCCTTGTCTCCCAAATCACTCATGGCAACAAATAGATTCCTATGTGAGATCTGCAACAAAGGGTTTCAGAGAGAACAGAACCTTCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAGCTAAAACAAAGGACAAACAAGGAGGTGAGGAAGAAGGTGTATCTGTGCCCAGAACCAACATGTGTCCACCATGACCCATCAAGGGCACTTGGGGACCTCACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGCGCTATGCGGTTCAGTCAGATTGGAAAGCTCACTCCAAGATCTGTGGCACAAGGGAGTATAGATGTGACTGTGGAACCCTTTTCTCTAGGAGGGACAGTTTCATCACCCACAGAGCCTTCTGTGATGCTTTAGCACAAGAGAACAGTACAAGCACTGCAGCTAGATCAGCAATGCCAGCTTCAATAAACCCTCTTCTCTCCTCTCTCCCCCAACTCCATACCCATGGCCTCCAAGGTCTCTCAGTGAAGAGAGAGCAAGACCAGCAGCAGCAGCTACTTCCGCCATGGCTCTCTTGCTTGCCCGAAGGGGAAGCCACCGCTCCATCCGGCCTTCCTTCCATGAACATGTCCTCACCATTATTCTCCACTTCCTCATTCCAGCAATATTATTCTTTTGATCATCAAAACCCTAACCCTAGCAGCAGCTCCACCACCACACTCCCTGATTTCCAGCAACCCCATACAGCTTCTCCTCACATGTCTGCAACTGCTTTGCTTCAAAAGGCTTCAGAGATGGGTGCCACAATCAGCAAGCCTTCCCATTCCCCAATGTTTCTCAAGCCACCCAGCCACCAAGCTCACGTGTCCAATGGAGCATTCGATGATGGGTTTGGGAACAATGATAATAAATCTTCTCTTTTGCATGATATGATGATGATGAGTAATAGCTTTGGAGATCAACAAGTTTCATCAGCGTTTGGAGATCATCGCCAGGCTTTCAATGGGATTATGGTGGGCGGTAATAATAACTTTGTTGAGGTTAACAATAATAATAATAATATTAATCCTCCGAAGAATTACAAAAGCATGGAATTAGAGCAACTTGGGAGGAGCGGTACTGATAACAACAATAACGATGAGGCCTTGACAAGAGATTTCTTGGGTCTTCGAGCACCATTTTCTTCATCGGCGGCGGCGGCGGCAGCAGCAGCATCCCATGGCCATGTGGATTTTTTCAATATTAATATGGCCGGGCTTGATCACCATGTCAATTCTTCTTCTTCTTCAGCTTACACTGGACAGCAGAGTGATCACCAGAACCAAACATCATGGCAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_jaz

Protein Analysis

526

Amino Acids

57.69

Weight (kDa)

8.48

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31720 FvH4_2g31720 FvH4_2g31720
malus_domestica	MD08G1063600.v1.1 MD15G1058000.v1.1
prunus_persica	Prupe.1G410700_v2.0.a1 Prupe.1G410700_v2.0.a1
pyrus_communis	pycom08g05230 pycom15g05460
rosa_chinensis	RchiOBHm_Chr6g0311101
rosa_laevigata	RLG00000010435
rosa_multiflora	Rmu_sc0008967.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158020
rosa_rugosa	Rorug06G0385500 Rorug06G0385500 Rorug06G0385500 Rorug06G0385600
rosa_samantha	Rh6AG499500 Rh6BG510100 Rh6CG515900 Rh6DG502400
rosa_wichuraiana	Rw6G043510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1034
AccBSI	CCGCTC	2 cut(s)	836, 1350
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	2 cut(s)	1456, 1485
AcuI	CTGAAG	5 cut(s)	84, 240, 296, 1008, 1506
AcvI	CACGTG	1 cut(s)	1099
AfaI	GTAC	3 cut(s)	116, 664, 1354
AfeI	AGCGCT	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflIII	ACRYGT	4 cut(s)	407, 861, 993, 1098
AgsI	TTSAA	5 cut(s)	78, 699, 1016, 1237, 1474
AjnI	CCWGG	2 cut(s)	196, 1227
AjuI	GAANNNNNNNTTGG	2 cut(s)	1097, 1129
Alw21I	GWGCWC	1 cut(s)	1411
Alw26I	GTCTC	2 cut(s)	240, 758
AlwI	GGATC	1 cut(s)	461
AlwNI	CAGNNNCTG	1 cut(s)	218
Aor51HI	AGCGCT	1 cut(s)	518
AoxI	GGCC	5 cut(s)	742, 844, 1377, 1456, 1485
AseI	ATTAAT	2 cut(s)	1299, 1479
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	442
AsuC2I	CCSGG	2 cut(s)	451, 1489
AsuHPI	GGTGA	8 cut(s)	68, 385, 439, 494, 613, 861, 1490, 1541
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	3 cut(s)	333, 398, 436
BalI	TGGCCA	1 cut(s)	1458
BanI	GGYRCC	1 cut(s)	1034
BbrPI	CACGTG	1 cut(s)	1099
BbsI	GAAGAC	1 cut(s)	1394
Bbv12I	GWGCWC	1 cut(s)	1411
BbvCI	CCTCAGC	1 cut(s)	120
BccI	CCATC	5 cut(s)	10, 433, 847, 1024, 1115
BciT130I	CCWGG	2 cut(s)	198, 1229
BclI	TGATCA	3 cut(s)	913, 1495, 1546
BcnI	CCSGG	2 cut(s)	451, 1489
BcoDI	GTCTC	2 cut(s)	240, 758
BfaI	CTAG	3 cut(s)	603, 678, 933
BfmI	CTRYAG	2 cut(s)	469, 672
BfoI	RGCGCY	1 cut(s)	520
BglII	AGATCT	2 cut(s)	276, 555
Bme1390I	CCNGG	4 cut(s)	198, 451, 1229, 1489
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	3 cut(s)	443, 592, 1036
BmrFI	CCNGG	4 cut(s)	198, 451, 1229, 1489
BmsI	GCATC	4 cut(s)	59, 205, 631, 1457
BpiI	GAAGAC	1 cut(s)	1394
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
Bpu10I	CCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	1058
BpuMI	CCSGG	2 cut(s)	451, 1489
BsaAI	YACGTR	1 cut(s)	1099
BsaI	GGTCTC	1 cut(s)	758
BsaJI	CCNNGG	5 cut(s)	341, 739, 748, 800, 1453
BsaXI	ACNNNNNCTCC	6 cut(s)	598, 628, 970, 1000, 1336, 1366
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	1537
Bse3DI	GCAATG	1 cut(s)	693
BseBI	CCWGG	2 cut(s)	198, 1229
BseDI	CCNNGG	5 cut(s)	341, 739, 748, 800, 1453
BseGI	GGATG	3 cut(s)	28, 839, 1448
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	2 cut(s)	134, 771
BseNI	ACTGG	1 cut(s)	1537
BseRI	GAGGAG	3 cut(s)	706, 978, 1360
BseSI	GKGCMC	3 cut(s)	333, 398, 436
BseYI	CCCAGC	1 cut(s)	1082
BshFI	GGCC	5 cut(s)	744, 846, 1379, 1458, 1487
BshNI	GGYRCC	1 cut(s)	1034
BsiHKAI	GWGCWC	1 cut(s)	1411
BsiSI	CCGG	3 cut(s)	450, 843, 1488
BslFI	GGGAC	2 cut(s)	455, 623
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	2 cut(s)	240, 758
BsmFI	GGGAC	2 cut(s)	455, 623
BsmI	GAATGC	1 cut(s)	1112
BsnI	GGCC	5 cut(s)	744, 846, 1379, 1458, 1487
Bso31I	GGTCTC	1 cut(s)	758
Bsp1286I	GDGCHC	4 cut(s)	333, 398, 436, 1411
Bsp143I	GATC	9 cut(s)	276, 453, 555, 680, 913, 1192, 1219, 1495, 1546
Bsp19I	CCATGG	4 cut(s)	341, 739, 800, 1453
BspANI	GGCC	5 cut(s)	744, 846, 1379, 1458, 1487
BspCNI	CTCAG	2 cut(s)	133, 770
BspLI	GGNNCC	3 cut(s)	443, 592, 1036
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	1034
BspTNI	GGTCTC	1 cut(s)	758
BsrBI	CCGCTC	2 cut(s)	836, 1350
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	1537
BssECI	CCNNGG	5 cut(s)	341, 739, 748, 800, 1453
BssMI	GATC	9 cut(s)	276, 453, 555, 680, 913, 1192, 1219, 1495, 1546
BssT1I	CCWWGG	5 cut(s)	341, 739, 748, 800, 1453
Bst2UI	CCWGG	2 cut(s)	198, 1229
Bst4CI	ACNGT	4 cut(s)	114, 587, 614, 662
Bst6I	CTCTTC	4 cut(s)	179, 319, 714, 758
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	1099
BstC8I	GCNNGC	4 cut(s)	106, 693, 815, 1049
BstDEI	CTNAG	2 cut(s)	120, 757
BstDSI	CCRYGG	4 cut(s)	341, 739, 800, 1453
BstF5I	GGATG	3 cut(s)	28, 839, 1448
BstH2I	RGCGCY	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	9 cut(s)	279, 456, 558, 683, 916, 1195, 1222, 1498, 1549
BstMAI	GTCTC	2 cut(s)	240, 758
BstMBI	GATC	9 cut(s)	276, 453, 555, 680, 913, 1192, 1219, 1495, 1546
BstNI	CCWGG	2 cut(s)	198, 1229
BstNSI	RCATGY	3 cut(s)	411, 865, 997
BstSCI	CCNGG	4 cut(s)	196, 449, 1227, 1487
BstSFI	CTRYAG	2 cut(s)	469, 672
BstSLI	GKGCMC	3 cut(s)	333, 398, 436
BstV2I	GAAGAC	1 cut(s)	1394
BstX2I	RGATCY	2 cut(s)	276, 555
BstXI	CCANNNNNNTGG	1 cut(s)	740
BstYI	RGATCY	2 cut(s)	276, 555
BsuRI	GGCC	5 cut(s)	744, 846, 1379, 1458, 1487
BtgI	CCRYGG	4 cut(s)	341, 739, 800, 1453
BtgZI	GCGATG	1 cut(s)	1208
BtsCI	GGATG	3 cut(s)	28, 839, 1448
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	4 cut(s)	110, 669, 765, 1530
Cac8I	GCNNGC	4 cut(s)	106, 693, 815, 1049
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	442
Csp6I	GTAC	3 cut(s)	115, 663, 1353
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviQI	GTAC	3 cut(s)	115, 663, 1353
DdeI	CTNAG	2 cut(s)	120, 757
DpnI	GATC	9 cut(s)	278, 455, 557, 682, 915, 1194, 1221, 1497, 1548
DpnII	GATC	9 cut(s)	276, 453, 555, 680, 913, 1192, 1219, 1495, 1546
EaeI	YGGCCR	2 cut(s)	1456, 1485
Eam1104I	CTCTTC	4 cut(s)	179, 319, 714, 758
EarI	CTCTTC	4 cut(s)	179, 319, 714, 758
EciI	GGCGGA	1 cut(s)	786
Eco130I	CCWWGG	5 cut(s)	341, 739, 748, 800, 1453
Eco147I	AGGCCT	1 cut(s)	1379
Eco31I	GGTCTC	1 cut(s)	758
Eco47I	GGWCC	1 cut(s)	442
Eco47III	AGCGCT	1 cut(s)	518
Eco57I	CTGAAG	5 cut(s)	84, 240, 296, 1008, 1506
Eco72I	CACGTG	1 cut(s)	1099
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	196, 1227
EcoT14I	CCWWGG	5 cut(s)	341, 739, 748, 800, 1453
ErhI	CCWWGG	5 cut(s)	341, 739, 748, 800, 1453
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	2 cut(s)	455, 623
FbaI	TGATCA	3 cut(s)	913, 1495, 1546
FokI	GGATG	3 cut(s)	35, 826, 1435
FspBI	CTAG	3 cut(s)	603, 678, 933
GlaI	GCGC	1 cut(s)	518
GsaI	CCCAGC	1 cut(s)	1086
HaeII	RGCGCY	1 cut(s)	520
HaeIII	GGCC	5 cut(s)	744, 846, 1379, 1458, 1487
HapII	CCGG	3 cut(s)	450, 843, 1488
HhaI	GCGC	1 cut(s)	519
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HincII	GTYRAC	1 cut(s)	1279
HindII	GTYRAC	1 cut(s)	1279
HinfI	GANTC	2 cut(s)	92, 264
HpaI	GTTAAC	1 cut(s)	1279
HpaII	CCGG	3 cut(s)	450, 843, 1488
HphI	GGTGA	8 cut(s)	68, 385, 439, 494, 613, 861, 1490, 1541
Hpy166II	GTNNAC	2 cut(s)	415, 1279
Hpy188I	TCNGA	5 cut(s)	86, 297, 535, 1027, 1308
Hpy188III	TCNNGA	1 cut(s)	457
Hpy8I	GTNNAC	2 cut(s)	415, 1279
HpyAV	CCTTC	7 cut(s)	320, 376, 643, 815, 857, 861, 1062
HpyCH4III	ACNGT	4 cut(s)	114, 587, 614, 662
HpyCH4IV	ACGT	1 cut(s)	1098
HpyCH4V	TGCA	5 cut(s)	50, 282, 674, 1001, 1159
HpyF3I	CTNAG	2 cut(s)	120, 757
HpySE526I	ACGT	1 cut(s)	1098
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	3 cut(s)	913, 1495, 1546
KspAI	GTTAAC	1 cut(s)	1279
Kzo9I	GATC	9 cut(s)	276, 453, 555, 680, 913, 1192, 1219, 1495, 1546
LmnI	GCTCC	4 cut(s)	841, 947, 1109, 1347
LweI	GCATC	4 cut(s)	59, 205, 631, 1457
MaeI	CTAG	3 cut(s)	603, 678, 933
MaeII	ACGT	1 cut(s)	1098
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	9 cut(s)	278, 455, 557, 682, 915, 1194, 1221, 1497, 1548
MbiI	CCGCTC	2 cut(s)	836, 1350
MboI	GATC	9 cut(s)	276, 453, 555, 680, 913, 1192, 1219, 1495, 1546
MflI	RGATCY	2 cut(s)	276, 555
MhlI	GDGCHC	4 cut(s)	333, 398, 436, 1411
MlsI	TGGCCA	1 cut(s)	1458
MluCI	AATT	6 cut(s)	37, 73, 334, 1312, 1328, 1507
MluNI	TGGCCA	1 cut(s)	1458
MlyI	GAGTC	1 cut(s)	101
Mox20I	TGGCCA	1 cut(s)	1458
MroXI	GAANNNNTTC	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	1458
MseI	TTAA	4 cut(s)	62, 1278, 1299, 1479
MslI	CAYNNNNRTG	3 cut(s)	738, 860, 1458
Msp20I	TGGCCA	1 cut(s)	1458
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	450, 843, 1488
MspR9I	CCNGG	4 cut(s)	198, 451, 1229, 1489
Mva1269I	GAATGC	1 cut(s)	1112
MvaI	CCWGG	2 cut(s)	198, 1229
NciI	CCSGG	2 cut(s)	451, 1489
NcoI	CCATGG	4 cut(s)	341, 739, 800, 1453
NdeII	GATC	9 cut(s)	276, 453, 555, 680, 913, 1192, 1219, 1495, 1546
NlaIV	GGNNCC	3 cut(s)	443, 592, 1036
NmuCI	GTSAC	1 cut(s)	581
NspI	RCATGY	3 cut(s)	411, 865, 997
PceI	AGGCCT	1 cut(s)	1379
PciI	ACATGT	3 cut(s)	407, 861, 993
PctI	GAATGC	1 cut(s)	1112
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	264
PleI	GAGTC	1 cut(s)	100
PmaCI	CACGTG	1 cut(s)	1099
PmlI	CACGTG	1 cut(s)	1099
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	1099
PpuMI	RGGWCCY	1 cut(s)	442
PscI	ACATGT	3 cut(s)	407, 861, 993
PshBI	ATTAAT	2 cut(s)	1299, 1479
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	2 cut(s)	196, 1227
PspCI	CACGTG	1 cut(s)	1099
PspFI	CCCAGC	1 cut(s)	1082
PspGI	CCWGG	2 cut(s)	196, 1227
PspN4I	GGNNCC	3 cut(s)	443, 592, 1036
PspPI	GGNCC	1 cut(s)	442
PspPPI	RGGWCCY	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	276, 555
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	3 cut(s)	116, 664, 1354
RsaNI	GTAC	3 cut(s)	115, 663, 1353
RseI	CAYNNNNRTG	3 cut(s)	738, 860, 1458
SaqAI	TTAA	4 cut(s)	62, 1278, 1299, 1479
Sau3AI	GATC	9 cut(s)	276, 453, 555, 680, 913, 1192, 1219, 1495, 1546
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	4 cut(s)	198, 451, 1229, 1489
SduI	GDGCHC	4 cut(s)	333, 398, 436, 1411
SfaNI	GCATC	4 cut(s)	59, 205, 631, 1457
SfcI	CTRYAG	2 cut(s)	469, 672
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	3 cut(s)	738, 860, 1458
SmlI	CTYRAG	1 cut(s)	1073
SmoI	CTYRAG	1 cut(s)	1073
Sse9I	AATT	6 cut(s)	37, 73, 334, 1312, 1328, 1507
SseBI	AGGCCT	1 cut(s)	1379
SspI	AATATT	3 cut(s)	902, 1297, 1477
SspMI	CTAG	3 cut(s)	603, 678, 933
StuI	AGGCCT	1 cut(s)	1379
StyD4I	CCNGG	4 cut(s)	196, 449, 1227, 1487
StyI	CCWWGG	5 cut(s)	341, 739, 748, 800, 1453
TaaI	ACNGT	4 cut(s)	114, 587, 614, 662
TaiI	ACGT	1 cut(s)	1101
TaqI	TCGA	2 cut(s)	1116, 1405
TasI	AATT	6 cut(s)	37, 73, 334, 1312, 1328, 1507
TatI	WGTACW	1 cut(s)	662
TauI	GCSGC	5 cut(s)	160, 1430, 1433, 1436, 1439
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	4 cut(s)	62, 1278, 1299, 1479
Tru9I	TTAA	4 cut(s)	62, 1278, 1299, 1479
TscAI	CASTG	4 cut(s)	117, 676, 765, 1537
TseFI	GTSAC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	6 cut(s)	20, 308, 607, 872, 1194, 1410
TspRI	CASTG	4 cut(s)	117, 676, 765, 1537
VpaK11BI	GGWCC	1 cut(s)	442
VspI	ATTAAT	2 cut(s)	1299, 1479
XceI	RCATGY	3 cut(s)	411, 865, 997
XcmI	CCANNNNNNNNNTGG	2 cut(s)	247, 1235
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	3 cut(s)	603, 678, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.