MD08G1148700.v1.1

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0016269
Physical Location & Seq
Reverse (-)
14978515 .. 14978895
381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1148700.v1.1.491

Sequence Viewer

Length: 381 bp
ATGGTGGTACTAGAAGTAATATGTGGGAGAAGATCAAAAGGGTTCATGGACAATTACAGTATAGTAGAACACATTTGGAATTCGTATTCGAAAAATGCGTTGGTTGATTGTGTGGACCAAACGTTGGACAGAAAATTTGAGGAGGAACAAGTGAAAAGGACATTGATTGTAGGGCTTGCATGCTTGCACACATATTCTATGCTGAGACCAAAGATGAGGAAGGTGGCACAAATTCTTATGAATCCTAATGAGAAGCTATTCAAATTGCAGGATACGAGGCCAGGGCCGAGGGCAAGTGCGGTTTACTTATCAGTATCTTATTCTGCTCCAACAACTGAATTTGGCTCTAGAAATACCTCATACACTGCCTCATACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

127

Amino Acids

14.42

Weight (kDa)

9.03

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29290
malus_domestica MD08G1148700.v1.1 MD08G1148800.v1.1 MD08G1212600.v1.1 MD15G1124000.v1.1
prunus_persica Prupe.1G479400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298101
rosa_laevigata RLG00000011534
rosa_multiflora Rmu_sc0002800.1_g000004
rosa_rugosa Rorug06G0278900
rosa_samantha Rh6AG389000 Rh6BG397300 Rh6CG403200 Rh6DG389800
rosa_wichuraiana Rw6G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 124
AciI CCGC 1 cut(s) 299
AclI AACGTT 1 cut(s) 122
AcsI RAATTY 4 cut(s) 79, 134, 231, 338
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 262
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 2 cut(s) 278, 284
ApoI RAATTY 4 cut(s) 79, 134, 231, 338
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 115, 284
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 11, 348
BfuI GTATCC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 115, 284
BmrFI CCNGG 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 281, 287
Bsc4I CCNNNNNNNGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 281, 287
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 155
BshFI GGCC 2 cut(s) 280, 286
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 199
BsnI GGCC 2 cut(s) 280, 286
Bso31I GGTCTC 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 89
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 1 cut(s) 299
BspANI GGCC 2 cut(s) 280, 286
BspCNI CTCAG 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 281, 287
BssMI GATC 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 177, 181, 185
BstDEI CTNAG 1 cut(s) 203
BstKTI GATC 1 cut(s) 35
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 280
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 2 cut(s) 280, 286
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 3 cut(s) 177, 181, 185
Cfr13I GGNCC 2 cut(s) 115, 284
Csp6I GTAC 1 cut(s) 8
CviAII CATG 2 cut(s) 46, 180
CviJI RGCY 5 cut(s) 175, 256, 280, 286, 345
CviKI_1 RGCY 5 cut(s) 175, 256, 280, 286, 345
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 2 cut(s) 49, 183
FaiI YATR 9 cut(s) 22, 47, 62, 181, 193, 200, 239, 361, 373
FatI CATG 2 cut(s) 45, 179
FspBI CTAG 2 cut(s) 11, 348
HaeIII GGCC 2 cut(s) 280, 286
Hin1II CATG 2 cut(s) 49, 183
HinfI GANTC 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 115, 304
Hpy188III TCNNGA 1 cut(s) 348
Hpy8I GTNNAC 2 cut(s) 115, 304
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 3 cut(s) 179, 187, 268
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 2 cut(s) 49, 183
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 3 cut(s) 254, 267, 294
MaeI CTAG 2 cut(s) 11, 348
MaeII ACGT 1 cut(s) 122
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 1 cut(s) 42
MluCI AATT 6 cut(s) 52, 79, 134, 231, 263, 338
MmeI TCCRAC 2 cut(s) 105, 353
MnlI CCTC 7 cut(s) 133, 136, 210, 270, 282, 367, 379
MroXI GAANNNNTTC 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
NdeII GATC 1 cut(s) 32
NlaIII CATG 2 cut(s) 49, 183
NmeAIII GCCGAG 1 cut(s) 312
NspI RCATGY 1 cut(s) 183
NspV TTCGAA 1 cut(s) 89
PaeI GCATGC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 124
Psp1406I AACGTT 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspPI GGNCC 2 cut(s) 115, 284
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 32
Sau96I GGNCC 2 cut(s) 115, 284
ScrFI CCNGG 1 cut(s) 282
SetI ASST 4 cut(s) 125, 225, 258, 359
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 1 cut(s) 115
SphI GCATGC 1 cut(s) 183
Sse9I AATT 6 cut(s) 52, 79, 134, 231, 263, 338
SsiI CCGC 1 cut(s) 299
SspMI CTAG 2 cut(s) 11, 348
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 89
TasI AATT 6 cut(s) 52, 79, 134, 231, 263, 338
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 34, 254
TspRI CASTG 1 cut(s) 370
Van91I CCANNNNNTGG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 4 cut(s) 79, 134, 231, 338
XbaI TCTAGA 1 cut(s) 347
XceI RCATGY 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 2 cut(s) 11, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.